BAC Information

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BAC

Clone NameB6Ng01-021I18
Chromosome12 (Build37)
Map Location 32,574,672 - 32,692,772
singlet/doubletdoublet
Overlap geneHbp1, Prkar2b
Upstream geneAcp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021I18.bB6Ng01-021I18.g
ACCDH854022DH854023
length9771,011
definitionDH854022|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I18, 5' end.DH854023|Mus musculus domesticus DNA, BAC clone: B6Ng01-021I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,574,672 - 32,575,556)(32,691,746 - 32,692,772)
sequence
gaattcaaatcccagaacctacatctaaacaacaacaacaaaaattgaat
aaaaccaaaaatgggtgtgatgatgagtgcttgaaatatcagcaacaaga
tggtagagggtggctcatcattggggctcactggccaagcagtttaccat
acctggcaagctccgggccagtgaggaggttgtctcaaaatccagctgag
gttgacctctggcctcctcacatgtgaacatgtacctgcacacacactca
gaccttcgtggacatgcacacacagtaggcatctgaagaatggcacccaa
ggttttcctctgtgtgcaacataagcacctgcacacacacagaacatatc
acaaatccaactcaaaacgtcttaaactaggtaacaatgtctgtactacc
aaagcatctatagattatttctaaccactattaggattccaatgttttct
catagaaataaaaagaaacaaatcctaaaactctaaagccctgggtagcc
atggcaacctaaggataaagagcaaagccaaagacatcacacttcctgat
ttgaatctatcctcagagtaactgaggcttagggagatggctcagttggg
aagcatctgctgctcaagcatgagctgtaatccccaggccctgggaccct
gaacagcgtggcctgcaatcccagcagcagcattgcaggtgcagagcagc
atccctgaagctcacaaacaaggtgcctaccattcagcttccctcagaga
cctcgtgtcagacagagatgcatggtgaggaccaacaccacagttgtccc
tggctcttaccataacacacacacaaacatgcacacacacaggactaagc
aagagacactttaaaatagtttaacagctgtagaatcatagtgagttact
ggcattaaaaatgaaaagaacgttgtcccgtggaatagaataaagagcca
gaattgagtcagttttataaatgattt
gaattcctaattctcctgcttctccctcctcagagctgccgtcacaccgg
gttgctatggtgcctgggattgattctagggcctcctgcatactgggcaa
gcactctaccaactgagctgtactcttagcccctcaaagagtaatttaaa
aatattaataacatacatgaatacatatcttaattattttttatttatta
ttggggactctttttaactatcggtttttagatggaaggacttgaagagt
acttactgaattgaccttgagaatgttaaaggctttatcttttaaaagat
ttattttatgtacgtgcgtacaccgtagttgaccttcagacacaccagaa
gagggcattagattctgttacagatggttgtgagctgccatttggttcct
gggaattggactcaggacctctagaaaagcagttagtgctgtaaactgct
gggccatctctccagccctcaaagcttttatttttgagataggatcttaa
tgtccagagcggcctccgactcagctaagggtgactttgaaccccctgct
tctgcctctggggtgcagagatggcaggcttgtaccgcctgccataacaa
atttatgtggttgtggggatcaaacccacgccttgtgcatgctaagcaac
tcctctcctcgctgagctacatccccagccacttttcaaagcccgtgata
cttttcgaatctggcgtctttccattccattcccacttctcaccagcagt
gctgaggaattcattcaaacctgtctttgccatactgtcttttaacttaa
acaaattaacaaaaacaaaaaagacccatagaactttgctattattgaca
caaatgtttagtagttgttcctagattttattttcctatttaatcattcg
tctgatgtagaaaattaatttgatcagatcttgtcagagaaatatgacag
ctgtataaaaagaattctaacctacgagtatttatatcatgtcttaatat
tattgcttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32574672_32575556
seq2: B6Ng01-021I18.b_41_925

seq1  GAATTCAAATCCCAGAACCTACATCTAAACAACAACAACAAAAATTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCAGAACCTACATCTAAACAACAACAACAAAAATTGAAT  50

seq1  AAAACCAAAAATGGGTGTGATGATGAGTGCTTGAAATATCAGCAACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAATGGGTGTGATGATGAGTGCTTGAAATATCAGCAACAAGA  100

seq1  TGGTAGAGGGTGGCTCATCATTGGGGCTCACTGGCCAAGCAGTTTACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGGGTGGCTCATCATTGGGGCTCACTGGCCAAGCAGTTTACCAT  150

seq1  ACCTGGCAAGCTCCGGGCCAGTGAGGAGGTTGTCTCAAAATCCAGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAAGCTCCGGGCCAGTGAGGAGGTTGTCTCAAAATCCAGCTGAG  200

seq1  GTTGACCTCTGGCCTCCTCACATGTGAACATGTACCTGCACACACACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTCTGGCCTCCTCACATGTGAACATGTACCTGCACACACACTCA  250

seq1  GACCTTCGTGGACATGCACACACAGTAGGCATCTGAAGAATGGCACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGTGGACATGCACACACAGTAGGCATCTGAAGAATGGCACCCAA  300

seq1  GGTTTTCCTCTGTGTGCAACATAAGCACCTGCACACACACAGAACATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCCTCTGTGTGCAACATAAGCACCTGCACACACACAGAACATATC  350

seq1  ACAAATCCAACTCAAAACGTCTTAAACTAGGTAACAATGTCTGTACTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCAACTCAAAACGTCTTAAACTAGGTAACAATGTCTGTACTACC  400

seq1  AAAGCATCTATAGATTATTTCTAACCACTATTAGGATTCCAATGTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCTATAGATTATTTCTAACCACTATTAGGATTCCAATGTTTTCT  450

seq1  CATAGAAATAAAAAGAAACAAATCCTAAAACTCTAAAGCCCTGGGTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAATAAAAAGAAACAAATCCTAAAACTCTAAAGCCCTGGGTAGCC  500

seq1  ATGGCAACCTAAGGATAAAGAGCAAAGCCAAAGACATCACACTTCCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACCTAAGGATAAAGAGCAAAGCCAAAGACATCACACTTCCTGAT  550

seq1  TTGAATCTATCCTCAGAGTAACTGAGGCTTAGGGAGATGGCTCAGTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTATCCTCAGAGTAACTGAGGCTTAGGGAGATGGCTCAGTTGGG  600

seq1  AAGCATCTGCTGCTCAAGCATGAGCTGTAATCCCCAGGCCCTGGGACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTGCTGCTCAAGCATGAGCTGTAATCCCCAGGCCCTGGGACCCT  650

seq1  GAACAGCGTGGCCTGCAATCCCAGCAGCAGCATTGCAGGTGCAGAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCGTGGCCTGCAATCCCAGCAGCAGCATTGCAGGTGCAGAGCAGC  700

seq1  ATCCCTGAAGCTCACAAACAAGGTGCCTACCATTCAGCTTCCCTCAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAAGCTCACAAACAAGGTGCCTACCATTCAGCTTCCCTCAGAGA  750

seq1  CCTCGTGTCAGACAGAGATGCATGGTGAGGACCAACACCACAGTTGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGTCAGACAGAGATGCATGGTGAGGACCAACACCACAGTTGTCCC  800

seq1  TGGCTCTTACCATAACACACACACAAACATGCACACACACAGGACTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTACCATAACACACACACAAACATGCACACACACAGGACTAAGC  850

seq1  AAGAGACACTTTAAAATAGTTTAACAGCTGTAGAA  885
      |||||||||||||||||||||||||||||||||||
seq2  AAGAGACACTTTAAAATAGTTTAACAGCTGTAGAA  885

seq1: chr12_32691746_32692772
seq2: B6Ng01-021I18.g_68_1078 (reverse)

seq1  GAAAAGCAATAATATATAATGACATGTATCCTAATTTCTCTTTTGCTAGA  50
      ||||||||||||||| ||| |||||| ||  ||| | ||| |  | ||| 
seq2  GAAAAGCAATAATAT-TAA-GACATG-AT-ATAAATACTCGTAGGTTAG-  45

seq1  AATTCTTTTTTATCAGCTGTCATTTTTCTCTGACCAAGATCTGAATCAAG  100
      ||||||||||   |||||||||| ||||||||| ||||||||| ||||| 
seq2  AATTCTTTTTATACAGCTGTCATATTTCTCTGA-CAAGATCTG-ATCAAA  93

seq1  TGAATTTTTTAAATTAAGATAGAATGATATAATAAGGAAAAATTAAAATC  150
      | |||||| || | | |||  ||||||| |||  |||||||  |||||||
seq2  TTAATTTTCTACA-TCAGA-CGAATGAT-TAAATAGGAAAA--TAAAATC  138

seq1  TAGGAACAAACTACTAAACATTTGTGTCAAATAAATTAGCAAAGTTCTTT  200
      ||||||| |||||||||||||||||||| |||||  |||||||||||| |
seq2  TAGGAAC-AACTACTAAACATTTGTGTC-AATAA--TAGCAAAGTTCTAT  184

seq1  GGGTCTTTTTTGTTTTTGTTAATTTGTTTAAGTTAAAAGACAGTATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTTTTGTTTTTGTTAATTTGTTTAAGTTAAAAGACAGTATGGCA  234

seq1  AAGACAGGTTTAGAATGAAATTCCTCAGCACTGCTGGTGAGAAGTGGGAA  300
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AAGACAGGTTT-GAATG-AATTCCTCAGCACTGCTGGTGAGAAGTGGGAA  282

seq1  TGGAATGG-AAGACGCCAGATTCGAAAAGTATCACGGGCTTTG-AAAGTG  348
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TGGAATGGAAAGACGCCAGATTCGAAAAGTATCACGGGCTTTGAAAAGTG  332

seq1  GCTGGGGATGTAGCTCAGCGAGGAGAGGAGTTGCTTAGCATGCACAAGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGATGTAGCTCAGCGAGGAGAGGAGTTGCTTAGCATGCACAAGGC  382

seq1  GTGGGTTTGATCCCCACAACCACATAAATTTGTTATGGCAGGCGGTACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTGATCCCCACAACCACATAAATTTGTTATGGCAGGCGGTACAA  432

seq1  GCCTGCCATCTCTGCACCCCAGAGGCAGAAGCAGGGGGTTCAAAGTCACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCATCTCTGCACCCCAGAGGCAGAAGCAGGGGGTTCAAAGTCACC  482

seq1  CTTAGCTGAGTCGGAGGCCGCTCTGGACATTAAGATCCTATCTCAAAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGAGTCGGAGGCCGCTCTGGACATTAAGATCCTATCTCAAAAAT  532

seq1  AAAAGCTTTGAGGGCTGGAGAGATGGCCCAGCAGTTTACAGCACTAACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTGAGGGCTGGAGAGATGGCCCAGCAGTTTACAGCACTAACTG  582

seq1  CTTTTCTAGAGGTCCTGAGTCCAATTCCCAGGAACCAAATGGCAGCTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGAGGTCCTGAGTCCAATTCCCAGGAACCAAATGGCAGCTCAC  632

seq1  AACCATCTGTAACAGAATCTAATGCCCTCTTCTGGTGTGTCTGAAGGTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGTAACAGAATCTAATGCCCTCTTCTGGTGTGTCTGAAGGTCA  682

seq1  ACTACGGTGTACGCACGTACATAAAATAAATCTTTTAAAAGATAAAGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGGTGTACGCACGTACATAAAATAAATCTTTTAAAAGATAAAGCCT  732

seq1  TTAACATTCTCAAGGTCAATTCAGTAAGTACTCTTCAAGTCCTTCCATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTCTCAAGGTCAATTCAGTAAGTACTCTTCAAGTCCTTCCATCT  782

seq1  AAAAACCGATAGTTAAAAAGAGTCCCCAATAATAAATAAAAAATAATTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCGATAGTTAAAAAGAGTCCCCAATAATAAATAAAAAATAATTAA  832

seq1  GATATGTATTCATGTATGTTATTAATATTTTTAAATTACTCTTTGAGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTATTCATGTATGTTATTAATATTTTTAAATTACTCTTTGAGGGG  882

seq1  CTAAGAGTACAGCTCAGTTGGTAGAGTGCTTGCCCAGTATGCAGGAGGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTACAGCTCAGTTGGTAGAGTGCTTGCCCAGTATGCAGGAGGCC  932

seq1  CTAGAATCAATCCCAGGCACCATAGCAACCCGGTGTGACGGCAGCTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCAATCCCAGGCACCATAGCAACCCGGTGTGACGGCAGCTCTGA  982

seq1  GGAGGGAGAAGCAGGAGAATTAGGAATTC  1027
      |||||||||||||||||||||||||||||
seq2  GGAGGGAGAAGCAGGAGAATTAGGAATTC  1011