BAC Information

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BAC

Clone NameB6Ng01-021M16
Chromosome12 (Build37)
Map Location 104,331,565 - 104,469,553
singlet/doubletdoublet
Overlap gene9030205A07Rik, Prima1
Upstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, LOC667269
Downstream geneEG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M16.bB6Ng01-021M16.g
ACCDH854199DH854200
length1,0881,067
definitionDH854199|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M16, 5' end.DH854200|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,331,565 - 104,332,667)(104,468,474 - 104,469,553)
sequence
gaattctgtccacatggctttgcttctcccaaagactcaccttctaatac
tgtcacttaaatcactgagtttcagggtggtgaacattttaggggaatgg
acataaatattcagattatagtactatgcaagctaattagttttagtgat
tataacagcagaggtctctgtgtgttcagctatgtgcttttaagttataa
tgattataacagcagaggtctctgtgtgttcaaatgtgtgcttttaagtt
ataatgaaaacaagaagagacctgacttactccaaactctccctgtaaaa
tgggaaaacaacccaggactcgattctctcatgtgtcctaaaatgtagtt
tgggggataatgaggtggctcagtagatacaggtgcctgaggcacgagtt
tgaggaccagagttcaattccctgaacctcctggtagggaagagaatggg
cttctaaaagttgtctctggcctccacatatgctgcaggataagcatata
tgtgtgcatgtgtgcatgcacacgcaataataaaacataacatcatgttg
agtgtatgcttctcagtgtagacatttaaaaagtcattgttatttggatt
aagtggacattatttaatatttagaaagcgaatggcatacatttcgctca
cagttttgggtggacatggaagaggtactgtgacttaggagaactcgctt
gtgcatttttttctctttcaatattggaatcagaaaaattccactgggat
aattttgccttgaggacagtgccttgttccattgactgcccagtgtattg
tttcttagaggtttgtatctggtccctctttttcagggcctttgtctttg
ccttgacttccagttcgacactgtggttaaagaccgacccaccatcctga
gcaagcttttactcttgcattttcttaagcaagacattcctgctttgagc
tgggagttctttgttaacagatttgagacactttcttggaagcctcgctg
catctagatgtaacaagaatttccttttctacagtaggtagaacaagatt
acgaaatggtcccactaagtgcttgctgtagcttgttc
gaattccgttcacatcccttctagggcgatcctcaaagtaaaatgggatc
ccctatgatggtattttaagaaggtatgggggacaatacacaggcaaaac
ccatgacagccaccagaatggaggacctgagcttgcttccttgggccacg
gaagaagaaccatataccaccagccctcaaagaaaagcgtgtgcaccccc
tctgtgagaccggcttcaaggcaggcaagccggaaatagctgtggcagag
cagaggcgtgagccggtgtgtccacagagtccaaggacttcaaagcactg
ggatgggttttatttctgcctttatttaattcttatagaaatcagaaggg
aggttaagtgactcccctaaaggccacacgtcagtggcacagctgggaac
agggttgcctggccccactgtgtgccatgcattaacaaaaaggattccaa
ctaagctgtgggtgttatagaatattttatttttgaggcagggtttcccg
ttgtaagtttagcctagaactgtagatccacccagtcttcccagtaatga
gtttgtagacatgtaccaccatactcagttagaatgcctccccatgcttt
ggacagtagaaagaaaccaatgttttgtccctgatcctgcaggcaagagc
tcagcgaaccctcagacacgcctatgcaataagtggcattatccttactt
tctctgcaaagaccagagcttcagcaagggcaggtttcttggtccaggct
gcccagctggaagggccagcctgcctctgaggatctcacctcacccccgc
cctagcctggtttcacacggctacagaacaagctgcctcaatagatggcc
cacaaaaggttgttccctcactgtcccagatggcaggtgaactgcatccc
gccaggatgctctcccatgtgtcttttatgagctgtagtgactgctgggc
gggtcattcaaagacttcccctctcgggtaggctgtttgataccggcttt
gtcacactgttggcagtcctcagctgggcatgcactaagacacttgcgag
gatgtcccacacggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104331565_104332667
seq2: B6Ng01-021M16.b_46_1133

seq1  GAATTCTGTCCACATGGCTTTGCTTCTCCCAAAGACTCACCTTCTAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCACATGGCTTTGCTTCTCCCAAAGACTCACCTTCTAATAC  50

seq1  TGTCACTTAAATCACTGAGTTTCAGGGTGGTGAACATTTTAGGGGAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTAAATCACTGAGTTTCAGGGTGGTGAACATTTTAGGGGAATGG  100

seq1  ACATAAATATTCAGATTATAGTACTATGCAAGCTAATTAGTTTTAGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATATTCAGATTATAGTACTATGCAAGCTAATTAGTTTTAGTGAT  150

seq1  TATAACAGCAGAGGTCTCTGTGTGTTCAGCTATGTGCTTTTAAGTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGCAGAGGTCTCTGTGTGTTCAGCTATGTGCTTTTAAGTTATAA  200

seq1  TGATTATAACAGCAGAGGTCTCTGTGTGTTCAAATGTGTGCTTTTAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAACAGCAGAGGTCTCTGTGTGTTCAAATGTGTGCTTTTAAGTT  250

seq1  ATAATGAAAACAAGAAGAGACCTGACTTACTCCAAACTCTCCCTGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAAACAAGAAGAGACCTGACTTACTCCAAACTCTCCCTGTAAAA  300

seq1  TGGGAAAACAACCCAGGACTCGATTCTCTCATGTGTCCTAAAATGTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAACAACCCAGGACTCGATTCTCTCATGTGTCCTAAAATGTAGTT  350

seq1  TGGGGGATAATGAGGTGGCTCAGTAGATACAGGTGCCTGAGGCACGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGATAATGAGGTGGCTCAGTAGATACAGGTGCCTGAGGCACGAGTT  400

seq1  TGAGGACCAGAGTTCAATTCCCTGAACCTCCTGGTAGGGAAGAGAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCAGAGTTCAATTCCCTGAACCTCCTGGTAGGGAAGAGAATGGG  450

seq1  CTTCTAAAAGTTGTCTCTGGCCTCCACATATGCTGCAGGATAAGCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAAGTTGTCTCTGGCCTCCACATATGCTGCAGGATAAGCATATA  500

seq1  TGTGTGCATGTGTGCATGCACACGCAATAATAAAACATAACATCATGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGTGTGCATGCACACGCAATAATAAAACATAACATCATGTTG  550

seq1  AGTGTATGCTTCTCAGTGTAGACATTTAAAAAGTCATTGTTATTTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGCTTCTCAGTGTAGACATTTAAAAAGTCATTGTTATTTGGATT  600

seq1  AAGTGGACATTATTTAATATTTAGAAAGCGAATGGCATACATTTCGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGACATTATTTAATATTTAGAAAGCGAATGGCATACATTTCGCTCA  650

seq1  CAGTTTTGGGTGGACATGGAAGAGGTACTGTGACTTAGGAGAAACTCGCT  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTTTTGGGTGGACATGGAAGAGGTACTGTGACTTAGGAG-AACTCGCT  699

seq1  TGTGCATTTTTTTCTCTTTCAATATTGGAATCAGAAAAATTCCACTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTTTTTCTCTTTCAATATTGGAATCAGAAAAATTCCACTGGGA  749

seq1  TAATTTTGCCTTGAGGACAGTGCCTTGTTCCATTGACTGCCCAGTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCCTTGAGGACAGTGCCTTGTTCCATTGACTGCCCAGTGTATT  799

seq1  GTTTCTTAGAGGTTTGTATCTGGTCCCTCTTTTCCAGGGCCTTTGTCTTT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTCTTAGAGGTTTGTATCTGGTCCCTCTTTTTCAGGGCCTTTGTCTTT  849

seq1  GCCTTGACTTCCAGTTCGACACTGTGGTTAAAGACCGACCCACCATCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACTTCCAGTTCGACACTGTGGTTAAAGACCGACCCACCATCCTG  899

seq1  AGCAAGCTTTTACTCTTGCATTTTCTTAAGCAAGACATTCCTGCTTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTTTTACTCTTGCATTTTCTTAAGCAAGACATTCCTGCTTTGAG  949

seq1  CTGGGAGTTCTTTGTTAACAGATTTGAGACACTTTCTTTGGAAGCTCAGC  1000
      |||||||||||||||||||||||||||||||||||| ||||||||   ||
seq2  CTGGGAGTTCTTTGTTAACAGATTTGAGACACTTTC-TTGGAAGCCTCGC  998

seq1  TGCATCTAGATTGTAACAAAGAATTTCCTTTTCCTACAAGTAAGTAAGAT  1050
      |||||||||| |||||| |||||||||||||| |||| |||| || ||| 
seq2  TGCATCTAGA-TGTAAC-AAGAATTTCCTTTT-CTAC-AGTAGGT-AGA-  1042

seq1  ACAAGACTTACAGAAAATGGTCCCCACTAAGGTGCTTGGCATGTAGCTTG  1100
      |||||| ||||   ||||||| |||||||| |||||||   |||||||||
seq2  ACAAGA-TTAC--GAAATGGT-CCCACTAA-GTGCTTG--CTGTAGCTTG  1085

seq1  TTC  1103
      |||
seq2  TTC  1088

seq1: chr12_104468474_104469553
seq2: B6Ng01-021M16.g_67_1133 (reverse)

seq1  AGACCGTGTGGTGACATCACTCGCAGGTGCTCTAGTGCATGGCCCAGCTG  50
      ||||||||||| |||||| |||||| |||   |||||||| |||||||||
seq2  AGACCGTGTGG-GACATC-CTCGCAAGTGTCTTAGTGCAT-GCCCAGCTG  47

seq1  AGGACCCTGCCAACAG-GTGACCAAAGCCGGTATCAACCAGCCTACCCGA  99
      ||||  |||||||||| |||| ||||||||||||||| ||||||||||||
seq2  AGGA--CTGCCAACAGTGTGA-CAAAGCCGGTATCAAACAGCCTACCCGA  94

seq1  GAGGGGAAGTCTTTGGAATGACCCGGCCCAGGCAGTTCACTACAGCTTCA  149
      |||||||||||||| ||||||||| ||||| |||| |||||||||| |||
seq2  GAGGGGAAGTCTTT-GAATGACCC-GCCCA-GCAG-TCACTACAGC-TCA  139

seq1  TAAAAGACACATGGGGAGAGCATCCTGGCGGGATGCAGTTCACCCTGCCA  199
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TAAAAGACACAT-GGGAGAGCATCCTGGCGGGATGCAGTTCA-CCTGCCA  187

seq1  TCTGGGACAGTGAGGGAACAACCCTTTTGTGGGCCATCTATTGAGGCAGC  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTGGGACAGTGAGGGAACAA-CCTTTTGTGGGCCATCTATTGAGGCAGC  236

seq1  TTGTTCTGTAGCCGTGTGAAACCAGGCTAGGGCGGGGGTGAGGTGAGATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTAGCCGTGTGAAACCAGGCTAGGGCGGGGGTGAGGTGAGATC  286

seq1  CTCAGAGGCAGGCTGGCCCTTCCAGCTGGGCAGCCTGGACCAAGAAACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGCAGGCTGGCCCTTCCAGCTGGGCAGCCTGGACCAAGAAACCT  336

seq1  GCCCTTGCTGAAGCTCTGGTCTTTGCAGAGAAAGTAAGGATAATGCCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCTGAAGCTCTGGTCTTTGCAGAGAAAGTAAGGATAATGCCACT  386

seq1  TATTGCATAGGCGTGTCTGAGGGTTCGCTGAGCTCTTGCCTGCAGGATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATAGGCGTGTCTGAGGGTTCGCTGAGCTCTTGCCTGCAGGATCA  436

seq1  GGGACAAAACATTGGTTTCTTTCTACTGTCCAAAGCATGGGGAGGCATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAACATTGGTTTCTTTCTACTGTCCAAAGCATGGGGAGGCATTC  486

seq1  TAACTGAGTATGGTGGTACATGTCTACAAACTCATTACTGGGAAGACTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGTATGGTGGTACATGTCTACAAACTCATTACTGGGAAGACTGG  536

seq1  GTGGATCTACAGTTCTAGGCTAAACTTACAACGGGAAACCCTGCCTCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCTACAGTTCTAGGCTAAACTTACAACGGGAAACCCTGCCTCAAA  586

seq1  AATAAAATATTCTATAACACCCACAGCTTAGTTGGAATCCTTTTTGTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATATTCTATAACACCCACAGCTTAGTTGGAATCCTTTTTGTTAA  636

seq1  TGCATGGCACACAGTGGGGCCAGGCAACCCTGTTCCCAGCTGTGCCACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCACACAGTGGGGCCAGGCAACCCTGTTCCCAGCTGTGCCACTG  686

seq1  ACGTGTGGCCTTTAGGGGAGTCACTTAACCTCCCTTCTGATTTCTATAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGGCCTTTAGGGGAGTCACTTAACCTCCCTTCTGATTTCTATAAG  736

seq1  AATTAAATAAAGGCAGAAATAAAACCCATCCCAGTGCTTTGAAGTCCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATAAAGGCAGAAATAAAACCCATCCCAGTGCTTTGAAGTCCTTG  786

seq1  GACTCTGTGGACACACCGGCTCACGCCTCTGCTCTGCCACAGCTATTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTGGACACACCGGCTCACGCCTCTGCTCTGCCACAGCTATTTCC  836

seq1  GGCTTGCCTGCCTTGAAGCCGGTCTCACAGAGGGGGTGCACACGCTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCTGCCTTGAAGCCGGTCTCACAGAGGGGGTGCACACGCTTTTC  886

seq1  TTTGAGGGCTGGTGGTATATGGTTCTTCTTCCGTGGCCCAAGGAAGCAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGCTGGTGGTATATGGTTCTTCTTCCGTGGCCCAAGGAAGCAAG  936

seq1  CTCAGGTCCTCCATTCTGGTGGCTGTCATGGGTTTTGCCTGTGTATTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCTCCATTCTGGTGGCTGTCATGGGTTTTGCCTGTGTATTGTC  986

seq1  CCCCATACCTTCTTAAAATACCATCATAGGGGATCCCATTTTACTTTGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACCTTCTTAAAATACCATCATAGGGGATCCCATTTTACTTTGAG  1036

seq1  GATCGCCCTAGAAGGGATGTGAACGGAATTC  1080
      |||||||||||||||||||||||||||||||
seq2  GATCGCCCTAGAAGGGATGTGAACGGAATTC  1067