BAC Information

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BAC

Clone NameB6Ng01-022F05
Chromosome12 (Build37)
Map Location 81,958,810 - 82,127,774
singlet/doubletdoublet
Overlap gene4933426M11Rik, Sfrs5, Slc10a1
Upstream geneLOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSmoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022F05.bB6Ng01-022F05.g
ACCDH854577DH854578
length1,012138
definitionDH854577|Mus musculus domesticus DNA, BAC clone: B6Ng01-022F05, 5' end.DH854578|Mus musculus domesticus DNA, BAC clone: B6Ng01-022F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,958,810 - 81,959,833)(82,127,637 - 82,127,774)
sequence
gaattcagctgtggcaccagctggggatgtgtctggcattgtggaagatc
gtaattagatgctgtatattatatctcctttttcccctttcaactctggt
agaatgtctttgagaaggggcttttagtttcggcagtataaatactttaa
tatgcctaattatgtaatcacacagttatatttctttacacacacatttt
tttaaatggattctttaattccttttctaatactgaactgtctagcctgc
tctttggttggaggcaaacatgcattgggcaagaaaaggaggaccagagg
catttagtgattttcctctggttatgctctgtccttttgtctctctactt
tatggtcttgtccttttatctgaaatgattaacatctcattttcctagca
aattccaggtaatttatgtaaaattagattttataatactcttatcttct
attaatttacaaatgcagtcttttaaagtaagttgatttttttcccccag
ttctgtttcaagtagatgtagagtataagcctgggataggagaatttgac
atgcaggcacaataggagcaattgatctctggcattgagcttatgcaaaa
agggcctgtcaccccagctgttagagctgggccctggggagcagctgctt
tctgggatctagtcctctagggatgccctccatctgctgccatggtccag
gtcctggggaagaccttgaccccaactcatctctgtattttactcaccag
ttccttccggttccttctgtgctgctctgcaaacctgagaagcaagatga
ttgtactggaaaacttccatgattttcctgtctctccctcttcctcattc
cacgacactgcacatccattccactgggaagcacttgtttcaagggtgta
tcctctggatcttcagagattagcacataaagcagactttcatttttcac
ttttatacttagggctggacggattgtagactcatttcttggagaagatc
ctagattcacat
ccgttataaaccccgggaggggaggggcggggcccggagaggctgactga
cgggtcgagaggcctgtagcagccgaccctccggcaggtggaagccaatg
ggagagagatgagaggggcggttcgtggtcagtacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81958810_81959833
seq2: B6Ng01-022F05.b_45_1056

seq1  GAATTCAGCTGTGGCACCAGCTGGGGATGTGTCTGGCATTGTGGAAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTGGCACCAGCTGGGGATGTGTCTGGCATTGTGGAAGATC  50

seq1  GTAATTAGATGCTGTATATTATATCTCCTTTTTCCCCTTTCAACTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGATGCTGTATATTATATCTCCTTTTTCCCCTTTCAACTCTGGT  100

seq1  AGAATGTCTTTGAGAAGGGGCTTTTAGTTTCGGCAGTATAAATACTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCTTTGAGAAGGGGCTTTTAGTTTCGGCAGTATAAATACTTTAA  150

seq1  TATGCCTAATTATGTAATCACACAGTTATATTTCTTTACACACACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTAATTATGTAATCACACAGTTATATTTCTTTACACACACATTTT  200

seq1  TTTAAATGGATTCTTTAATTCCTTTTCTAATACTGAACTGTCTAGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGATTCTTTAATTCCTTTTCTAATACTGAACTGTCTAGCCTGC  250

seq1  TCTTTGGTTGGAGGCAAACATGCATTGGGCAAGAAAAGGAGGACCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTGGAGGCAAACATGCATTGGGCAAGAAAAGGAGGACCAGAGG  300

seq1  CATTTAGTGATTTTCCTCTGGTTATGCTCTGTCCTTTTGTCTCTCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTGATTTTCCTCTGGTTATGCTCTGTCCTTTTGTCTCTCTACTT  350

seq1  TATGGTCTTGTCCTTTTATCTGAAATGATTAACATCTCATTTTCCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTTGTCCTTTTATCTGAAATGATTAACATCTCATTTTCCTAGCA  400

seq1  AATTCCAGGTAATTTATGTAAAATTAGATTTTATAATACTCTTATCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGTAATTTATGTAAAATTAGATTTTATAATACTCTTATCTTCT  450

seq1  ATTAATTTACAAATGCAGTCTTTTAAAGTAAGTTGATTTTTTTCCCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTACAAATGCAGTCTTTTAAAGTAAGTTGATTTTTTTCCCCCAG  500

seq1  TTCTGTTTCAAGTAGATGTAGAGTATAAGCCTGGGATAGGAGAATTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCAAGTAGATGTAGAGTATAAGCCTGGGATAGGAGAATTTGAC  550

seq1  ATGCAGGCACAATAGGAGCAATTGATCTCTGGCATTGAGCTTATGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCACAATAGGAGCAATTGATCTCTGGCATTGAGCTTATGCAAAA  600

seq1  AGGGCCTGTCACCCCAGCTGTTAGAGCTGGGCCCT-GGGAGCAGCTGCTT  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGGCCTGTCACCCCAGCTGTTAGAGCTGGGCCCTGGGGAGCAGCTGCTT  650

seq1  TCTGGGATCTAGTCCTCTAGGGATGCCCTCCATCTGCTGCCATGGTCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATCTAGTCCTCTAGGGATGCCCTCCATCTGCTGCCATGGTCCAG  700

seq1  GTCCTGGGAAAGACCTTGACCCCAACTCATCTCTGTATTTTACTCACCAG  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGGAAGACCTTGACCCCAACTCATCTCTGTATTTTACTCACCAG  750

seq1  TTCCTTCCGGTTCCTTCTGTGCTGCTCTGCAAACCTGAGAAGCAAGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCGGTTCCTTCTGTGCTGCTCTGCAAACCTGAGAAGCAAGATGA  800

seq1  TTGTACTGGAAAACTTCCATGATTTTCCTGTTCTCTCCCTCTTCCTCATT  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTACTGGAAAACTTCCATGATTTTCCTG-TCTCTCCCTCTTCCTCATT  849

seq1  CCACGACACTGCACATCCAATTCCACTGGGAAGCACTTGTTTCAAGGGTG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCACGACACTGCACATCC-ATTCCACTGGGAAGCACTTGTTTCAAGGGTG  898

seq1  TATACCCCTGGATTCTTCAGGAGAATTAGCACCATAAAGCAGACTTTCAT  949
      ||| || ||||| |||||| ||| ||||||| ||||||||||||||||||
seq2  TAT-CCTCTGGA-TCTTCA-GAG-ATTAGCA-CATAAAGCAGACTTTCAT  943

seq1  TTTTCACTTTTATACTTTAGGGCTGGACGGATTTGTAGAACTCATTTCTT  999
      ||||||||||||||| ||||||||||||||| |||||| |||||||||||
seq2  TTTTCACTTTTATAC-TTAGGGCTGGACGGA-TTGTAG-ACTCATTTCTT  990

seq1  GGAAGAAGAACCTAAGAGTTCACAT  1024
      || |||||| ||| ||| |||||||
seq2  GG-AGAAGATCCT-AGA-TTCACAT  1012

seq1: chr12_82127637_82127774
seq2: B6Ng01-022F05.g_75_212 (reverse)

seq1  GGGGTACTGACCACGAACCGCCCCTCTCATCTCTCTCCCATTGGCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGACCACGAACCGCCCCTCTCATCTCTCTCCCATTGGCTTCCA  50

seq1  CCTGCCGGAGGGTCGGCTGCTACAGGCCTCTCGACCCGTCAGTCAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGGAGGGTCGGCTGCTACAGGCCTCTCGACCCGTCAGTCAGCCTC  100

seq1  TCCGGGCCCCGCCCCTCCCCTCCCGGGGTTTATAACGG  138
      ||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCCCCGCCCCTCCCCTCCCGGGGTTTATAACGG  138