BAC Information

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BAC

Clone NameB6Ng01-022L06
Chromosome12 (Build37)
Map Location 103,317,247 - 103,489,702
singlet/doubletdoublet
Overlap geneSlc24a4
Upstream geneSmek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Downstream geneRin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022L06.bB6Ng01-022L06.g
ACCDH854836DH854837
length951,094
definitionDH854836|Mus musculus domesticus DNA, BAC clone: B6Ng01-022L06, 5' end.DH854837|Mus musculus domesticus DNA, BAC clone: B6Ng01-022L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,317,247 - 103,317,341)(103,488,593 - 103,489,702)
sequence
gaattcacagggaatgttcccagagtccagttctgctaccatgcttgttt
tgatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcactttggggaattgtgaccctggctacctaaatacccaggaacc
tctctgtagatagacacaaactgcagaagggcacatttcttgtttcatag
acacaaaattttaccaggcatttgtccttttgctgctacaggctttgcat
attgttttgacatctgtcttcatcgtggtcccacccaggcagttaggcat
caccacccaccactggtttcctaggaaacaatcctctagtggactctgtc
tctactgctgtggttttttaacagttgggtgtcatatactggtggatcag
acagtcgctttagtgggtgggaactagtatttcctttaaaagaaatgaaa
tcagtgggtgatacacagtgaaagctaaatgttatttcacgaaacctctc
tctctctctctctctgtgtgtgtgtgtgtgtacatatatgcacatgagtg
tggaggccaggggtcaaccttgagtgtccttcctcaggattcatctactt
ggcttatttctgacagggtttctcactggaaactgggtaccatttcctct
aggctgcttagcctttgagctggtgtccactggcgtctcagtgaggtcta
caggcacacaccgccaagaattatttttaaaaggcagtgaggccatcgca
agggacatccaacactgatggttcagttcacggatggttcattcttgcct
cccaagtgacagctacctccactctcctggaggttcctcctggtgcccag
cccttccctttcctgtgcactgccaggacaaaacatcatcacagcggata
ctgatggatacatcaactcccaggagaagaagatagggcctgatagcatg
tctttccttagtctctgatttctctcttaaagtagaacattacagtttat
tatgcgataaaaagtattaaatgacctcaacagaacagatggcccatcat
gccggaggaaaagaacagatgtagtagttgatgaaaactccacctaattt
ggatggttactaataagtgcttcagtttagggagtggctaccagtggtct
ggggttgactgcacccctggctgtaaatgaattttctggccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103317247_103317341
seq2: B6Ng01-022L06.b_41_135

seq1  GAATTCACAGGGAATGTTCCCAGAGTCCAGTTCTGCTACCATGCTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGAATGTTCCCAGAGTCCAGTTCTGCTACCATGCTTGTTT  50

seq1  TGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  95
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  95

seq1: chr12_103488593_103489702
seq2: B6Ng01-022L06.g_67_1160 (reverse)

seq1  CAGGGCCCAAGAAATTCTCTTTACCAGCCAGGGGTGCAGTCCACCCCCAG  50
      |||||||  ||||| | || ||  ||||||||||||||||| |||||   
seq2  CAGGGCC--AGAAAAT-TCATTTACAGCCAGGGGTGCAGTCAACCCC--A  45

seq1  GACCACTAGTTAGCCACTCCCTTAACTGAAGCATCTAATTAGTTAACCAT  100
      ||||||| | |||||||||||| |||||||||| || ||||| |||||||
seq2  GACCACT-GGTAGCCACTCCCTAAACTGAAGCA-CTTATTAG-TAACCAT  92

seq1  CCAAATTAGTGTGAGGTTTTCATCAACTACTACATCTGTTCTTTTCCCTC  150
      ||||||||| |||  |||||||||||||||||||||||||||||| ||||
seq2  CCAAATTAG-GTGGAGTTTTCATCAACTACTACATCTGTTCTTTT-CCTC  140

seq1  CGGCATGATGGGCCATCTGTTCTGTTGCGGTTCATTTTAAATACTTTTTT  200
      ||||||||||||||||||||||||||| || ||||||  ||||| |||||
seq2  CGGCATGATGGGCCATCTGTTCTGTTGAGG-TCATTT--AATAC-TTTTT  186

seq1  ATCGCATAATTAAACTGTAATGTTCTACTTTAAGAGAGAAATCAGAGACT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  ATCGCATAA-TAAACTGTAATGTTCTACTTTAAGAGAGAAATCAGAGAC-  234

seq1  TAGGGAAAGACATGCTATCAGGCCCTATCTTCTTCTCCTGGGAGTTGATG  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAGACATGCTATCAGGCCCTATCTTCTTCTCCTGGGAGTTGATG  284

seq1  TATCCATCAGTATCCGCTGTGATGATGTTTTGTCCTGGCAGTGCACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCAGTATCCGCTGTGATGATGTTTTGTCCTGGCAGTGCACAGGA  334

seq1  AAGGGAAGGGCTGGGCACCAGGAGGAACCTCCAGGAGAGTGGAGGTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGGCTGGGCACCAGGAGGAACCTCCAGGAGAGTGGAGGTAGCT  384

seq1  GTCACTTGGGAGGCAAGAATGAACCATCCGTGAACTGAACCATCAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGGGAGGCAAGAATGAACCATCCGTGAACTGAACCATCAGTGTT  434

seq1  GGATGTCCCTTGCGATGGCCTCACTGCCTTTTAAAAATAATTCTTGGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCCTTGCGATGGCCTCACTGCCTTTTAAAAATAATTCTTGGCGG  484

seq1  TGTGTGCCTGTAGACCTCACTGAGACGCCAGTGGACACCAGCTCAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTGTAGACCTCACTGAGACGCCAGTGGACACCAGCTCAAAGGC  534

seq1  TAAGCAGCCTAGAGGAAATGGTACCCAGTTTCCAGTGAGAAACCCTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCCTAGAGGAAATGGTACCCAGTTTCCAGTGAGAAACCCTGTCA  584

seq1  GAAATAAGCCAAGTAGATGAATCCTGAGGAAGGACACTCAAGGTTGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCCAAGTAGATGAATCCTGAGGAAGGACACTCAAGGTTGACCC  634

seq1  CTGGCCTCCACACTCATGTGCATATATGTACACACACACACACACAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCCACACTCATGTGCATATATGTACACACACACACACACAGAGA  684

seq1  GAGAGAGAGAGAGAGGTTTCGTGAAATAACATTTAGCTTTCACTGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGGTTTCGTGAAATAACATTTAGCTTTCACTGTGTAT  734

seq1  CACCCACTGATTTCATTTCTTTTAAAGGAAATACTAGTTCCCACCCACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTGATTTCATTTCTTTTAAAGGAAATACTAGTTCCCACCCACTA  784

seq1  AAGCGACTGTCTGATCCACCAGTATATGACACCCAACTGTTAAAAAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGACTGTCTGATCCACCAGTATATGACACCCAACTGTTAAAAAACCA  834

seq1  CAGCAGTAGAGACAGAGTCCACTAGAGGATTGTTTCCTAGGAAACCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTAGAGACAGAGTCCACTAGAGGATTGTTTCCTAGGAAACCAGTG  884

seq1  GTGGGTGGTGATGCCTAACTGCCTGGGTGGGACCACGATGAAGACAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGTGATGCCTAACTGCCTGGGTGGGACCACGATGAAGACAGATG  934

seq1  TCAAAACAATATGCAAAGCCTGTAGCAGCAAAAGGACAAATGCCTGGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAATATGCAAAGCCTGTAGCAGCAAAAGGACAAATGCCTGGTAA  984

seq1  AATTTTGTGTCTATGAAACAAGAAATGTGCCCTTCTGCAGTTTGTGTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTGTCTATGAAACAAGAAATGTGCCCTTCTGCAGTTTGTGTCTA  1034

seq1  TCTACAGAGAGGTTCCTGGGTATTTAGGTAGCCAGGGTCACAATTCCCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGAGGTTCCTGGGTATTTAGGTAGCCAGGGTCACAATTCCCCA  1084

seq1  AAGTGAATTC  1110
      ||||||||||
seq2  AAGTGAATTC  1094