BAC Information

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BAC

Clone NameB6Ng01-022M06
Chromosome12 (Build37)
Map Location 103,317,247 - 103,489,702
singlet/doubletdoublet
Overlap geneSlc24a4
Upstream geneSmek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Downstream geneRin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022M06.bB6Ng01-022M06.g
ACCDH854880DH854881
length95991
definitionDH854880|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M06, 5' end.DH854881|Mus musculus domesticus DNA, BAC clone: B6Ng01-022M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,317,247 - 103,317,341)(103,488,705 - 103,489,702)
sequence
gaattcacagggaatgttcccagagtccagttttgctaccatgcttgttt
tgatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcactttttgggaattgtgaccctggctacctaaatacccaggaac
ctctctgtagatagacacaaactgcagaagggcacatttcttgtttcata
gacacaaaattttaccaggcatttgtccttttgctgctacaggctttgca
tattgttttgacatctgtcttcatcgtggtcccacccaggcagttaggca
tcaccacccaccactggtttcctaggaaacaatcctctagtggactctgt
ctctactgctgtggttttttaacagttgggtgtcatatactggtggatca
gacagtcgctttagtgggtgggaactagtatttcctttaaaagaaatgaa
atcagtgggtgatacacagtgaaagctaaatgttatttcacgaaacctct
ctctctctctctctctgtgtgtgtgtgtgtgtacatatatgcacatgagt
gtggaggccaggggtcaaccttgagtgtccttcctcaggattcatctact
tggcttatttctgacagggtttctcactggaaactgggtaccatttcctc
taggctgcttagcctttgagctggtgtccactggcgtctcagtgaggtct
acaggcacacaccgccaagaattattttttaaaaggcagtgaggccatcg
caagggacatccaacactgatggttcagttcacggatggttcattcttgc
ctcccaagtgacagctacctccactctcctggaggttcctcctggtgccc
agcccttccctttcctgtgcactgccagacaaacatcatcacagcggata
ctgatggatacatcaactcccaggagaaaagatagggcctattagcatgt
ctttccctaagtctctgatttctctcttaaagaagaacattcagtttaat
ttgcgataaaaagtattaaattgaaccgtaactgacagatgggccatcct
gccggagggaaagaacagatgtagtattgatgaaagcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103317247_103317341
seq2: B6Ng01-022M06.b_39_133

seq1  GAATTCACAGGGAATGTTCCCAGAGTCCAGTTCTGCTACCATGCTTGTTT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCACAGGGAATGTTCCCAGAGTCCAGTTTTGCTACCATGCTTGTTT  50

seq1  TGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  95
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  95

seq1: chr12_103488705_103489702
seq2: B6Ng01-022M06.g_68_1057 (reverse)

seq1  GAGGTTTTCATCAACTACTACATCTGTTCTTTTCCCTCCGGCATGATGGG  50
      |||| ||||||||| |||||||||||||| ||||||||||||| ||||| 
seq2  GAGGCTTTCATCAA-TACTACATCTGTTC-TTTCCCTCCGGCAGGATGGC  48

seq1  CCATCTGTTCTGTTGCGGTTCATTTTAAATACTTTTTTATCGCATAATTA  100
      ||||||| || ||| ||||||| ||| ||||| ||||||||||| |||||
seq2  CCATCTG-TCAGTTACGGTTCAATTT-AATAC-TTTTTATCGCA-AATTA  94

seq1  AACTGTAATGTTCTACTTTAAGAGAGAAATCAGAGACTTAGGGAAAGACA  150
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTG-AATGTTCTTCTTTAAGAGAGAAATCAGAGACTTAGGGAAAGACA  143

seq1  TGCTATCAGGCCCTATCTTCTTCTCCTGGGAGTTGATGTATCCATCAGTA  200
      |||||  |||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCTAATAGGCCCTATCTT-TTCTCCTGGGAGTTGATGTATCCATCAGTA  192

seq1  TCCGCTGTGATGATGTTTTGTCCTGGCAGTGCACAGGAAAGGGAAGGGCT  250
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TCCGCTGTGATGATG-TTTGT-CTGGCAGTGCACAGGAAAGGGAAGGGCT  240

seq1  GGGCACCAGGAGGAACCTCCAGGAGAGTGGAGGTAGCTGTCACTTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCAGGAGGAACCTCCAGGAGAGTGGAGGTAGCTGTCACTTGGGAG  290

seq1  GCAAGAATGAACCATCCGTGAACTGAACCATCAGTGTTGGATGTCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGAACCATCCGTGAACTGAACCATCAGTGTTGGATGTCCCTTG  340

seq1  CGATGGCCTCACTGCCTTTT-AAAAATAATTCTTGGCGGTGTGTGCCTGT  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGATGGCCTCACTGCCTTTTAAAAAATAATTCTTGGCGGTGTGTGCCTGT  390

seq1  AGACCTCACTGAGACGCCAGTGGACACCAGCTCAAAGGCTAAGCAGCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCACTGAGACGCCAGTGGACACCAGCTCAAAGGCTAAGCAGCCTA  440

seq1  GAGGAAATGGTACCCAGTTTCCAGTGAGAAACCCTGTCAGAAATAAGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGGTACCCAGTTTCCAGTGAGAAACCCTGTCAGAAATAAGCCA  490

seq1  AGTAGATGAATCCTGAGGAAGGACACTCAAGGTTGACCCCTGGCCTCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGAATCCTGAGGAAGGACACTCAAGGTTGACCCCTGGCCTCCAC  540

seq1  ACTCATGTGCATATATGTACACACACACACACACAGAGAGAGAGAGAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTGCATATATGTACACACACACACACACAGAGAGAGAGAGAGAG  590

seq1  AGAGGTTTCGTGAAATAACATTTAGCTTTCACTGTGTATCACCCACTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTCGTGAAATAACATTTAGCTTTCACTGTGTATCACCCACTGAT  640

seq1  TTCATTTCTTTTAAAGGAAATACTAGTTCCCACCCACTAAAGCGACTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTTTAAAGGAAATACTAGTTCCCACCCACTAAAGCGACTGTC  690

seq1  TGATCCACCAGTATATGACACCCAACTGTTAAAAAACCACAGCAGTAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACCAGTATATGACACCCAACTGTTAAAAAACCACAGCAGTAGAG  740

seq1  ACAGAGTCCACTAGAGGATTGTTTCCTAGGAAACCAGTGGTGGGTGGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCACTAGAGGATTGTTTCCTAGGAAACCAGTGGTGGGTGGTGA  790

seq1  TGCCTAACTGCCTGGGTGGGACCACGATGAAGACAGATGTCAAAACAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACTGCCTGGGTGGGACCACGATGAAGACAGATGTCAAAACAATA  840

seq1  TGCAAAGCCTGTAGCAGCAAAAGGACAAATGCCTGGTAAAATTTTGTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCCTGTAGCAGCAAAAGGACAAATGCCTGGTAAAATTTTGTGTC  890

seq1  TATGAAACAAGAAATGTGCCCTTCTGCAGTTTGTGTCTATCTACAGAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACAAGAAATGTGCCCTTCTGCAGTTTGTGTCTATCTACAGAGAG  940

seq1  GTTCCTGGGTATTTAGGTAGCCAGGGTCACAATTCCC-CAAAGTGAATTC  998
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GTTCCTGGGTATTTAGGTAGCCAGGGTCACAATTCCCAAAAAGTGAATTC  990