BAC Information

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BAC

Clone NameB6Ng01-023F03
Chromosome12 (Build37)
Map Location 82,682,875 - 82,807,188
singlet/doubletdoublet
Overlap geneMed6, Ttc9
Upstream geneGalntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21
Downstream geneLOC100041821, Map3k9, Pcnx, Sipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023F03.bB6Ng01-023F03.g
ACCDH855273DH855274
length1,135780
definitionDH855273|Mus musculus domesticus DNA, BAC clone: B6Ng01-023F03, 5' end.DH855274|Mus musculus domesticus DNA, BAC clone: B6Ng01-023F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,682,875 - 82,684,029)(82,806,410 - 82,807,188)
sequence
gaattccatgcactgcagtaagcttgtaaaacaaaaaaaccccaacacat
tctaaatctctcaagaggtcaactaatgtgtcctaagtaaatacaaatat
tacctattcaaagacagtaatttcctattttcagaattaccatttgacag
ttgtagtcacccttcagtatctgcaagggattagttccatattcacatgc
cttatataaaataatgagcatttcagtgtaacctataaattttatatatt
gttaaatcatttctaaattacttataaggcatagcataacataatataaa
tactatatagacagctattacaatgtattgtttagggaacaataaaatgg
acaacaaaatagtacaggtgtaacaggtgtagttcttgttccaggtgttt
tatgcatgttactaatgtagactgtagttattcaggcagactcaatatat
tagcactaagttgatccacagaaacagaactcaaaaccctccaacagtca
gcattttataccagctggcacaaagtgaaagaccttctacttgcttcaga
gcacggtatctcagttagatgtctgctttaatgttcaaagaatgtgaaaa
aagctaagtgtgcaatctcagtacttagaagatggaagcaggagaaccag
gggttcaaggccagtgttcaacagtacagggctactacgtcaaggacgga
agggagggagggaaggcaggcaggcaggtgagggaagacacataccactc
tggagtttataactgatcccaagtctggcgcctgatagatgactccagcg
atgatatagtaatcagccagtggaataactaaagcagcaaggaaaaatgc
ttatgaacacaccttgaaaacaaactgctaaaaagatgatttttcagaat
tggacagctaaacttaacacttccctaatagactttaaggaagtctggca
atttctctctttataagtagcacacaggaaacagccacactgttcatttc
ttgtacctagagttgagtcttctttttcattcatctatttaggcagagga
gttcatcaactcctaccacaggccatctcaatccagttaggtacggtata
ggtcacctgtcacaccagtgttcttgtatgcgtgc
gaattccaagcctgcctagactaactgtctgcattagatacccttcttct
tctttttttttttttttttttttttttttggttctgtatagccctggctg
tcctggaactcactttgtagaccaggctggcttcgaaatctgcctgcctc
tgcctcccgagtgctgagtttaatggcgtgtgccaccaaacccagctaga
tacccttctgaccgtaaaactattttgccagtcaccctctccagtgtgct
gacatggtaggcgaagccttggcacatgatatacagctccaacctgggca
gcattcctgtgtgctttgccacaggctcacagaaaaaaaggctcagctcc
agctaaaactatccttggcaaagcaggaatcaagtcccaaactactaagc
tacacagtggccagcaaggacttcttttaaatgttctgtatgatgaaagt
tcacgtcaacactcatataccggcagacacgtaaatggaactgcagactg
cttttaatggaatgttatttttccttagaagaacggttgtcaatcaaact
gtggggtttcaggctcctttatttgacaactatttttttttttgaaaaac
aaaacaaaaactggattgagcttgccactttgagtaaaatagctatttat
ggacaggaatcaaagttaagcttttatataaaaataagaattttggaaga
tgttatgagcttgacagttaaagttaaatccttagggattttttatttga
ttggtttgtttgggttgtttggctgtttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_82682875_82684029
seq2: B6Ng01-023F03.b_43_1177

seq1  GAATTCCATGCACTGCAGTAAGCTTGTAAAACAAAAAAACCCCAACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCACTGCAGTAAGCTTGTAAAACAAAAAAACCCCAACACAT  50

seq1  TCTAAATCTCTCAAGAGGTCAACTAATGTGTCCTAAGTAAATACAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCTCTCAAGAGGTCAACTAATGTGTCCTAAGTAAATACAAATAT  100

seq1  TACCTATTCAAAGACAGTAATTTCCTATTTTCAGAATTACCATTTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTCAAAGACAGTAATTTCCTATTTTCAGAATTACCATTTGACAG  150

seq1  TTGTAGTCACCCTTCAGTATCTGCAAGGGATTAGTTCCATATTCACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTCACCCTTCAGTATCTGCAAGGGATTAGTTCCATATTCACATGC  200

seq1  CTTATATAAAATAATGAGCATTTCAGTGTAACCTATAAATTTTATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAAAATAATGAGCATTTCAGTGTAACCTATAAATTTTATATATT  250

seq1  GTTAAATCATTTCTAAATTACTTATAAGGCATAGCATAACATAATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCATTTCTAAATTACTTATAAGGCATAGCATAACATAATATAAA  300

seq1  TACTATATAGACAGCTATTACAATGTATTGTTTAGGGAACAATAAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATAGACAGCTATTACAATGTATTGTTTAGGGAACAATAAAATGG  350

seq1  ACAACAAAATAGTACAGGTGTAACAGGTGTAGTTCTTGTTCCAGGTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAATAGTACAGGTGTAACAGGTGTAGTTCTTGTTCCAGGTGTTT  400

seq1  TATGCATGTTACTAATGTAGACTGTAGTTATTCAGGCAGACTCAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGTTACTAATGTAGACTGTAGTTATTCAGGCAGACTCAATATAT  450

seq1  TAGCACTAAGTTGATCCACAGAAACAGAACTCAAAACCCTCCAACAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTAAGTTGATCCACAGAAACAGAACTCAAAACCCTCCAACAGTCA  500

seq1  GCATTTTATACCAGCTGGCACAAAGTGAAAGACCTTCTACTTGCTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATACCAGCTGGCACAAAGTGAAAGACCTTCTACTTGCTTCAGA  550

seq1  GCACGGTATCTCAGTTAGATGTCTGCTTTAATGTTCAAAGAATGTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTATCTCAGTTAGATGTCTGCTTTAATGTTCAAAGAATGTGAAAA  600

seq1  AAGCTAAGTGTGCAATCTCAGTACTTAGAAGATGGAAGCAGGAGAACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGTGTGCAATCTCAGTACTTAGAAGATGGAAGCAGGAGAACCAG  650

seq1  GGGTTCAAGGCCAGTGTTCAACAGTACAGGGCTACTACGTCAAGGACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAAGGCCAGTGTTCAACAGTACAGGGCTACTACGTCAAGGACGGA  700

seq1  AGGGAGGGAGGGAAGGCAGGCAGGCAGGTGAGGGAAGACACATACCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGGAAGGCAGGCAGGCAGGTGAGGGAAGACACATACCACTC  750

seq1  TGGAGTTTATAACTGATCCCAAGTCTGGCGCCTGATAGATGACTCCAGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTATAACTGATCCCAAGTCTGGCGCCTGATAGATGACTCCAGCG  800

seq1  ATGATATAGTAATCAGCCAGTGGAATAACTAAAGCAGCAAGGAAAAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAGTAATCAGCCAGTGGAATAACTAAAGCAGCAAGGAAAAATGC  850

seq1  TTATGAACACACCTTGAAAACAAACTGCTAAAAAGATGATTTTTCAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTATGAACACACCTTGAAAACAAACTGCTAAAAAGATGATTTTTC-AGAA  899

seq1  TTGGACAGCTAAACTTAAACACTTCCCTAAATAGAACTTTAAGGGAAGGT  950
      |||||||||||||||| ||||||||||| ||||| |||||||||  | ||
seq2  TTGGACAGCTAAACTT-AACACTTCCCT-AATAG-ACTTTAAGG--AAGT  944

seq1  CTGGCAATTTCTCTCTTTATAAGTAAGCAACACAGGAAAACAGCCACACT  1000
      |||||||||||||||||||||||| ||| ||||||| |||||||||||||
seq2  CTGGCAATTTCTCTCTTTATAAGT-AGC-ACACAGG-AAACAGCCACACT  991

seq1  GTTCATTTCTTGTTACCTAGAGTTGAGTACTTCTATATCATTCCATCTAT  1050
      |||||||||||| ||||||||||||||| ||||| | ||||| |||||||
seq2  GTTCATTTCTTG-TACCTAGAGTTGAGT-CTTCTTTTTCATT-CATCTAT  1038

seq1  ATAGCCAGAGGAGTTCATCAACTCCTAACCACAGGCACATCTCAATCAAG  1100
       ||| ||||||||||||||||||||| ||||||||| |||||||||| ||
seq2  TTAGGCAGAGGAGTTCATCAACTCCT-ACCACAGGC-CATCTCAATCCAG  1086

seq1  TTAGGTACAGGTATAGGTACACATAGCACACACCAGTGTTCTGTGTATGC  1150
      |||||||| ||||||||| ||| |    |||||||||||||| |||||||
seq2  TTAGGTAC-GGTATAGGT-CACCT--GTCACACCAGTGTTCT-TGTATGC  1131

seq1  TGTGC  1155
       ||||
seq2  -GTGC  1135

seq1: chr12_82806410_82807188
seq2: B6Ng01-023F03.g_68_847 (reverse)

seq1  CTAAACAGCCAAACAA-CCAAACAAACCAATCAAATAAAAAATCCCTAAG  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAAACAGCCAAACAACCCAAACAAACCAATCAAATAAAAAATCCCTAAG  50

seq1  GATTTAACTTTAACTGTCAAGCTCATAACATCTTCCAAAATTCTTATTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAACTTTAACTGTCAAGCTCATAACATCTTCCAAAATTCTTATTTT  100

seq1  TATATAAAAGCTTAACTTTGATTCCTGTCCATAAATAGCTATTTTACTCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAAGCTTAACTTTGATTCCTGTCCATAAATAGCTATTTTACTCA  150

seq1  AAGTGGCAAGCTCAATCCAGTTTTTGTTTTGTTTTTCAAAAAAAAAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAAGCTCAATCCAGTTTTTGTTTTGTTTTTCAAAAAAAAAAATA  200

seq1  GTTGTCAAATAAAGGAGCCTGAAACCCCACAGTTTGATTGACAACCGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAAATAAAGGAGCCTGAAACCCCACAGTTTGATTGACAACCGTTC  250

seq1  TTCTAAGGAAAAATAACATTCCATTAAAAGCAGTCTGCAGTTCCATTTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGAAAAATAACATTCCATTAAAAGCAGTCTGCAGTTCCATTTAC  300

seq1  GTGTCTGCCGGTATATGAGTGTTGACGTGAACTTTCATCATACAGAACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCCGGTATATGAGTGTTGACGTGAACTTTCATCATACAGAACAT  350

seq1  TTAAAAGAAGTCCTTGCTGGCCACTGTGTAGCTTAGTAGTTTGGGACTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAGTCCTTGCTGGCCACTGTGTAGCTTAGTAGTTTGGGACTTG  400

seq1  ATTCCTGCTTTGCCAAGGATAGTCTTAGCTGGAGCTGAGCCTTCTTTTCT  449
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ATTCCTGCTTTGCCAAGGATAGTTTTAGCTGGAGCTGAGCCTTTTTTTCT  450

seq1  GTGAGCCTGTGGCAAAGCACACAGGAATGCTGCCCAGGTTGGAGCTGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTGTGGCAAAGCACACAGGAATGCTGCCCAGGTTGGAGCTGTAT  500

seq1  ATCATGTGCCAAGGCTTCGCCTACCATGTCAGCACACTGGAGAGGGTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGCCAAGGCTTCGCCTACCATGTCAGCACACTGGAGAGGGTGAC  550

seq1  TGGCAAAATAGTTTTACGGTCAGAAGGGTATCTAGCTGGGTTTGGTGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATAGTTTTACGGTCAGAAGGGTATCTAGCTGGGTTTGGTGGCA  600

seq1  CACGCCATTAAACTCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCATTAAACTCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCGAAG  650

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAC  700

seq1  CAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGGGTATCTAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGGGTATCTAATGC  750

seq1  AGACAGTTAGTCTAGGCAGGCTTGGAATTC  779
      ||||||||||||||||||||||||||||||
seq2  AGACAGTTAGTCTAGGCAGGCTTGGAATTC  780