BAC Information

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BAC

Clone NameB6Ng01-024J20
Chromosome12 (Build37)
Map Location 109,330,626 - 109,487,893
singlet/doubletdoublet
Overlap geneSetd3, Ccnk, EG668158
Upstream geneLOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151, Bcl11b
Downstream gene1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024J20.bB6Ng01-024J20.g
ACCDH856195DH856196
length708890
definitionDH856195|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J20, 5' end.DH856196|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,330,626 - 109,331,332)(109,487,001 - 109,487,893)
sequence
gaattcctgtcctgacttccctcggtgatgaatcatggtcgagatgtgta
tgcagaaacaaattttttcctcctcaagtggcttttgctcagagtgtttg
tcacagcaacagaaggcaaactgatacagacagtcccacccctacacaca
cacacacacacacacacacacacacatctctatgatactggactctcctg
cagtggagagggaaaggcagggtgcgactcagggaagcccaggtcccagc
tctaactccacagcttgctggctgtgaccccacatgggctgcgagcccaa
gttcccatatctgtaaactgaagttactgtctggcggtattgtcagaggc
tgagctgggagcagagtgcccagactacaggtgtcagcatgcaccgaacc
cccacctaccccgccatcttcttcatcttcctctatcacccccacatccc
tcacccccgatttcactgaactgatgtcacaaaaccttcagtcctggcct
gaggagcaaaaggcacttcctggctttgttttctgtgtgattctcctgac
tgattgcttatccccaccatgagggaccattttgtccaatgccgatggga
atttgttcgaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gtagaagtagaagaagaagaagaagaaggaggaggaggaggaggaggagg
aggaggat
gaattccccaggacagctttcgcttttcctttcaatttgccctgggctgg
ggcttgctggccctggacagagctgatggcagctcagtttcgtgatcgca
gaggcaaggtggctgcagctgaagcagtacaggacgcaggcacccgggtc
ttagcctcgtcctcatgcatgtacctgccggccccgtcactgaggatgct
tggttggggggttccacgctggaccccagctgtcttatgccaggttggca
tggtagagaattctacgaaggagagctgggtctggttcccagtactgccc
cttgtctgaagctgggctcttgggcttggagagaccaaggtcgcagcggg
cattcacatttctagaactctaagcttggcgggggccacccagtggttca
gtggctctcatcactctctaaaggttccctgcagatgaaggctgtgctca
gggttagctgcactgcagcggggctggctggagactccatggctgcggga
gaaatgagtggggtgtgagtgatggcctctttctgggtccctgatatctc
cagatattctggctgcctttccctgtcacttctggaactggcaccaagct
ctgtcctaggccttgacttgtgccgtccccagggtcatcaggaagcccct
gctccgccatcactgtcatcccatctcacgtgctgcagaggtgaggccgt
agggtcaggtggcccgtgcacggtcatctccaaatcaaggagaaggaatt
agaaccccatacccaggcccttctttaggtatagtgttaagtatatttga
gtgcctgttgcatacccaggtaggcctttgtgatgcttgagcaaggacaa
agagagtgaccttgggaagattgagagaaaatcattggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_109330626_109331332
seq2: B6Ng01-024J20.b_45_751

seq1  GAATTCCTGTCCTGACTTCCCTCGGTGATGAAGCATGGTCGAGATGTGTA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCCTGTCCTGACTTCCCTCGGTGATGAATCATGGTCGAGATGTGTA  50

seq1  TGCAGAAACAAATTTTTTCCTCCTCAAGTGGCTTTTGCTCAGAGTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACAAATTTTTTCCTCCTCAAGTGGCTTTTGCTCAGAGTGTTTG  100

seq1  TCACAGCAACAGAAGGCAAACTGATACAGACAGTCCCACCCCTACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAACAGAAGGCAAACTGATACAGACAGTCCCACCCCTACACACA  150

seq1  CACACACACACACACACACACACACATCTCTATGATACTGGACTCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATCTCTATGATACTGGACTCTCCTG  200

seq1  CAGTGGAGAGGGAAAGGCAGGGTGCGACTCAGGGAAGCCCAGGTCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGAGGGAAAGGCAGGGTGCGACTCAGGGAAGCCCAGGTCCCAGC  250

seq1  TCTAACTCCACAGCTTGCTGGCTGTGACCCCACATGGGCTGCGAGCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCCACAGCTTGCTGGCTGTGACCCCACATGGGCTGCGAGCCCAA  300

seq1  GTTCCCATATCTGTAAACTGAAGTTACTGTCTGGCGGTATTGTCAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATATCTGTAAACTGAAGTTACTGTCTGGCGGTATTGTCAGAGGC  350

seq1  TGAGCTGGGAGCAGAGTGCCCAGACTACAGGTGTCAGCATGCACCGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGGAGCAGAGTGCCCAGACTACAGGTGTCAGCATGCACCGAACC  400

seq1  CCCACCTACCCCGCCATCTTCTTCATCTTCCTCTATCACCCCCACATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTACCCCGCCATCTTCTTCATCTTCCTCTATCACCCCCACATCCC  450

seq1  TCACCCCCGATTTCACTGAACTGATGTCACAAAACCTTCAGTCCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCGATTTCACTGAACTGATGTCACAAAACCTTCAGTCCTGGCCT  500

seq1  GAGGAGCAAAAGGCACTTCCTGGCTTTGTTTTCTGTGTGATTCTCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCAAAAGGCACTTCCTGGCTTTGTTTTCTGTGTGATTCTCCTGAC  550

seq1  TGATTGCTTATCCCCACCATGAGGGACCATTTTGTCCAATGCCGATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTTATCCCCACCATGAGGGACCATTTTGTCCAATGCCGATGGGA  600

seq1  ATTTGTTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  650

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGG  700
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGTAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGG  700

seq1  AGGAGGA  707
      |||||||
seq2  AGGAGGA  707

seq1: chr12_109487001_109487893
seq2: B6Ng01-024J20.g_69_958 (reverse)

seq1  GGCCAATTGATTTTTCTCTCTAATCTTTCCAAGGTCACCTCTCTCTGTCC  50
      |||||| ||| ||||||||| |||||| ||||||||| |||||| |||||
seq2  GGCCAA-TGA-TTTTCTCTC-AATCTTCCCAAGGTCA-CTCTCTTTGTCC  46

seq1  -TGCTCACAGCATCACAAAGGCCTACCTGGGTATGCAACAGGCACTCAAA  99
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCA-AGCATCACAAAGGCCTACCTGGGTATGCAACAGGCACTCAAA  95

seq1  TATACTTAACACTATACCTAAAGAAGGGCCTGGGTATGGGGTTCTAATTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTAACACTATACCTAAAGAAGGGCCTGGGTATGGGGTTCTAATTC  145

seq1  CTTCTCCTTGATTTGGAGATGACCGTGCACGGGCCACCTGACCCTACGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTGATTTGGAGATGACCGTGCACGGGCCACCTGACCCTACGGC  195

seq1  CTCACCTCTGCAGCACGTGAGATGGGATGACAGTGATGGCGGAGCAGGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTGCAGCACGTGAGATGGGATGACAGTGATGGCGGAGCAGGGG  245

seq1  CTTCCTGATGACCCTGGGGACGGCACAAGTCAAGGCCTAGGACAGAGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATGACCCTGGGGACGGCACAAGTCAAGGCCTAGGACAGAGCTT  295

seq1  GGTGCCAGTTCCAGAAGTGACAGGG-AAGGCAGCCAGAATATCTGGAGAT  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGCCAGTTCCAGAAGTGACAGGGAAAGGCAGCCAGAATATCTGGAGAT  345

seq1  ATCAGGGACCCAGAAAGAGGCCATCACTCACACCCCACTCATTTCTCCCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGACCCAGAAAGAGGCCATCACTCACACCCCACTCATTTCTCCCG  395

seq1  CAGCCATGGAGTCTCCAGCCAGCCCCGCTGCAGTGCAGCTAACCCTGAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGGAGTCTCCAGCCAGCCCCGCTGCAGTGCAGCTAACCCTGAGC  445

seq1  ACAGCCTTCATCTGCAGGGAACCTTTAGAGAGTGATGAGAGCCACTGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTCATCTGCAGGGAACCTTTAGAGAGTGATGAGAGCCACTGAAC  495

seq1  CACTGGGTGGCCCCCGCCAAGCTTAGAGTTCTAGAAATGTGAATGCCCGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTGGCCCCCGCCAAGCTTAGAGTTCTAGAAATGTGAATGCCCGC  545

seq1  TGCGACCTTGGTCTCTCCAAGCCCAAGAGCCCAGCTTCAGACAAGGGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACCTTGGTCTCTCCAAGCCCAAGAGCCCAGCTTCAGACAAGGGGCA  595

seq1  GTACTGGGAACCAGACCCAGCTCTCCTTCGTAGAATTCTCTACCATGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGAACCAGACCCAGCTCTCCTTCGTAGAATTCTCTACCATGCCA  645

seq1  ACCTGGCATAAGACAGCTGGGGTCCAGCGTGGAACCCCCCAACCAAGCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCATAAGACAGCTGGGGTCCAGCGTGGAACCCCCCAACCAAGCAT  695

seq1  CCTCAGTGACGGGGCCGGCAGGTACATGCATGAGGACGAGGCTAAGACCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGACGGGGCCGGCAGGTACATGCATGAGGACGAGGCTAAGACCC  745

seq1  GGGTGCCTGCGTCCTGTACTGCTTCAGCTGCAGCCACCTTGCCTCTGCGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTGCGTCCTGTACTGCTTCAGCTGCAGCCACCTTGCCTCTGCGA  795

seq1  TCACGAAACTGAGCTGCCATCAGCTCTGTCCAGGGCCAGCAAGCCCCAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAAACTGAGCTGCCATCAGCTCTGTCCAGGGCCAGCAAGCCCCAGC  845

seq1  CCAGGGCAAATTGAAAGGAAAAGCGAAAGCTGTCCTGGGGAATTC  893
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAAATTGAAAGGAAAAGCGAAAGCTGTCCTGGGGAATTC  890