BAC Information

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BAC

Clone NameB6Ng01-024K16
Chromosome12 (Build37)
Map Location 103,072,907 - 103,239,817
singlet/doubletdoublet
Overlap geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Upstream gene9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5
Downstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K16.bB6Ng01-024K16.g
ACCDH856232DH856233
length1,101995
definitionDH856232|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K16, 5' end.DH856233|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,238,703 - 103,239,817)(103,072,907 - 103,073,903)
sequence
gaattctgtgtatggtatttaaaaatattttttaataggggctggagaga
tggctcagtgggtggtaaaagcattgactgctctttcagaggtcctgagt
tcaaatcccagcaaccacatggtggctcacaaacactcgtaatgagatct
gacgccctcttctggtgctgtgcttacatataataaatctctgggccaga
gcgagctgggctgatcggaacgagcagagaggtcctaaaattcaatcccc
aacaaccacatgaaggctcacaccatctgtacagctacagtgtactcaca
tacataaaataaataaatacatctttaaaaaacttttttaataatgaaaa
aaaattgataaggattttccttaaattatcattctgtagctgcagagatg
aagatacacagacatatgtcctgggcagtcctttttaagaactccaaaac
tgactcccatacaatgtattttaagtggctaaagccacaccaggggaact
agaagaacgaccaatggagaggcagttggacaggggatgcggctcaatgg
cagagtgcgaggcgagcacatgtgaggccccatcaccccagtaccactac
acagagacgagagatggcacaggcttctcacctcgtgaggtggcaaaggc
tccagcgtggggatgatctcagtctcctcacccaactctttctcgtcctc
tccaaacagactcttcatggccttctgctgggccatggcactagaatcgg
atggagcatccacttgcatttcagagtcttctccatcgtccttgagctct
ccttcttcttaaataactcccgtgtccactttggaaactctcatgtctaa
gacgccatcttatccaagctaactctgcatctttagctttacagaactga
aaggagctgacagtgagtcttttaattcttactggagaggaggaaaaatc
ccacaggtgtaggtaaccattaaacataatctctgccattctctaactct
gcaatatgacacatctatagccctctctcctcgattctaatcttacatga
catactacctggtaggttttaaagatccttgccacttccaagacaaggtt
c
gaattcttgatagtgtatttcactgtacttgaaaaccattaggaatgttg
tgaagaactgtggcttccaatgcaaaattcaactacaaattctaagtgca
gaaagacatccacagcccactcgcagcagttacaacactgcaccaagtct
gtggcttctgatgcaaaactcaatcacaaattccaccaatctcaagagca
gatagacttctgcagtcgccacagaactgccagcgagcctccagaagcgt
cctgttggaatcactgaacaagtgtgcttcttgcactctgctgagaagtc
tctttgagcagatggttcatctctgacacaactcagtttcagaaaagttg
atgggttatgtctggtttagatcaatgcatatgtagaatgcacacaacag
agatgttaggtactgcagctttcagacaaggtcatatacttcaatagcag
ccatgtaagacagtgttctttgatgcctggatgtagaatccccccccaca
gcagccttcagacttaggttacatgaaacagtgagggagggaaggttgtt
ttagtcaaagaacttcaaatgtcataaaagttatttaaatataaaacaca
ttgcttaaatatccaccatgtgcctcttctttaaaagaaaaccatttaca
tcttccattttcttcttagtgtaaagtcttttggctactttattcataac
ttaacatttcctggcaagcagtacatgatccaggctaatgagagagagta
actttttacgaaacacataaaaacctctatcagtagaccctcacttacaa
tggcttaactgtttcaactgtggagtttggccaaatgatacacactaaac
tgaaaccacgcctcggatttagtctctctcctctcagtgctgggcagccg
tgggcacagagaccctgtggggccaactgacagctgagtagagcaaacaa
atgctcaattcaagacgttttttattagggtgggttaatgggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103238703_103239817
seq2: B6Ng01-024K16.b_34_1134 (reverse)

seq1  GAACCTTGCTCTGGAAAGTGGCCAAGGATCTTTTAAAACCTTACAGGTAA  50
      |||||||| ||| | |||||| |||||||| ||||||||||  ||||| |
seq2  GAACCTTG-TCTTGGAAGTGG-CAAGGATC-TTTAAAACCTACCAGGT-A  46

seq1  GTATGTCATTGTAAAGATTAGAGATCTGAGGAGAGAGGGCTTTAGATGTT  100
      |||||||| ||| ||||||||| ||| |||||||||||||| ||||||| 
seq2  GTATGTCA-TGT-AAGATTAGA-ATC-GAGGAGAGAGGGCTATAGATGT-  91

seq1  GATCATATTGCCAGAGTTAGAGAATGGCAGAGATTATGTTTAATTGGTTA  150
        |||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  -GTCATATTG-CAGAGTTAGAGAATGGCAGAGATTATGTTTAA-TGGTTA  138

seq1  CCTACACCCTGTGGGATTTTTCCTTCCTCTCCAGGTAAG-ATTAAAAGAC  199
      |||||| |||||||||||||||| ||||||||| ||||| ||||||||||
seq2  CCTACA-CCTGTGGGATTTTTCC-TCCTCTCCA-GTAAGAATTAAAAGAC  185

seq1  TCACTTGTCAGCTCCCTTCAGTTCTGTAAAGCTAAAGATGCCGAGTTAGC  249
      |||| |||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TCAC-TGTCAGCTCCTTTCAGTTCTGTAAAGCTAAAGATGCAGAGTTAGC  234

seq1  TTGGAT-AGATGGCGTCTTAGACATGAGAGTTTCCAAAGTGGACACGGGA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAGATGGCGTCTTAGACATGAGAGTTTCCAAAGTGGACACGGGA  284

seq1  GTTATTTTAGAAGAAGGAGAGCTCAAGGACGATGGAGAAGACTCTGAAAT  348
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTAAGAAGAAGGAGAGCTCAAGGACGATGGAGAAGACTCTGAAAT  334

seq1  GCAAGTGGATGCTCCATCCGATTCTAGTGCCATGGCCCAGCAGAAGGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGATGCTCCATCCGATTCTAGTGCCATGGCCCAGCAGAAGGCCA  384

seq1  TGAAGAGTCTGTTTGGAGAGGACGAGAAAGAGTTGGGTGAGGAGACTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTCTGTTTGGAGAGGACGAGAAAGAGTTGGGTGAGGAGACTGAG  434

seq1  ATCATCCCCACGCTGGAGCCTTTGCCACCTCACGAGGTGAGAAGCCTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCCACGCTGGAGCCTTTGCCACCTCACGAGGTGAGAAGCCTGTG  484

seq1  CCATCTCTCGTCTCTGTGTAGTGGTACTGGGGTGATGGGGCCTCACATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCGTCTCTGTGTAGTGGTACTGGGGTGATGGGGCCTCACATGT  534

seq1  GCTCGCCTCGCACTCTGCCATTGAGCCGCATCCCCTGTCCAACTGCCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCCTCGCACTCTGCCATTGAGCCGCATCCCCTGTCCAACTGCCTCT  584

seq1  CCATTGGTCGTTCTTCTAGTTCCCCTGGTGTGGCTTTAGCCACTTAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTCGTTCTTCTAGTTCCCCTGGTGTGGCTTTAGCCACTTAAAAT  634

seq1  ACATTGTATGGGAGTCAGTTTTGGAGTTCTTAAAAAGGACTGCCCAGGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATGGGAGTCAGTTTTGGAGTTCTTAAAAAGGACTGCCCAGGAC  684

seq1  ATATGTCTGTGTATCTTCATCTCTGCAGCTACAGAATGATAATTTAAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGTGTATCTTCATCTCTGCAGCTACAGAATGATAATTTAAGGA  734

seq1  AAATCCTTATCAATTTTTTTTCATTATTAAAAAAGTTTTTTAAAGATGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTATCAATTTTTTTTCATTATTAAAAAAGTTTTTTAAAGATGTA  784

seq1  TTTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAGATGGTGTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAGATGGTGTGA  834

seq1  GCCTTCATGTGGTTGTTGGGGATTGAATTTTAGGACCTCTCTGCTCGTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATGTGGTTGTTGGGGATTGAATTTTAGGACCTCTCTGCTCGTTC  884

seq1  CGATCAGCCCAGCTCGCTCTGGCCCAGAGATTTATTATATGTAAGCACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAGCCCAGCTCGCTCTGGCCCAGAGATTTATTATATGTAAGCACAG  934

seq1  CACCAGAAGAGGGCGTCAGATCTCATTACGAGTGTTTGTGAGCCACCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGGGCGTCAGATCTCATTACGAGTGTTTGTGAGCCACCATG  984

seq1  TGGTTGCTGGGATTTGAACTCAGGACCTCTGAAAGAGCAGTCAATGCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGATTTGAACTCAGGACCTCTGAAAGAGCAGTCAATGCTTT  1034

seq1  TACCACCCACTGAGCCATCTCTCCAGCCCCTATTAAAAAATATTTTTAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCCACTGAGCCATCTCTCCAGCCCCTATTAAAAAATATTTTTAAA  1084

seq1  TACCATACACAGAATTC  1115
      |||||||||||||||||
seq2  TACCATACACAGAATTC  1101

seq1: chr12_103072907_103073903
seq2: B6Ng01-024K16.g_71_1065

seq1  GAATTCTTGATAGTGTATTTCACTGTACTTGAAAACCATTAGGAATGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATAGTGTATTTCACTGTACTTGAAAACCATTAGGAATGTTG  50

seq1  TGAAGAACTGTGGCTTCCAATGCAAAATTCAACTACAAATTCTAAGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACTGTGGCTTCCAATGCAAAATTCAACTACAAATTCTAAGTGCA  100

seq1  GAAAGACATCCACAGCCCACTCGCAGCAGTTACAACACTGCACCAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACATCCACAGCCCACTCGCAGCAGTTACAACACTGCACCAAGTCT  150

seq1  GTGGCTTCTGATGCAAAACTCAATCACAAATTCCACCAATCTCAAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTGATGCAAAACTCAATCACAAATTCCACCAATCTCAAGAGCA  200

seq1  GATAGACTTCTGCAGTCGCCACAGAACTGCCAGCGAGCCTCCAGAAGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTTCTGCAGTCGCCACAGAACTGCCAGCGAGCCTCCAGAAGCGT  250

seq1  CCTGTTGGAATCACTGAACAAGTGTGCTTCTTGCACTCTGCTGAGAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGAATCACTGAACAAGTGTGCTTCTTGCACTCTGCTGAGAAGTC  300

seq1  TCTTTGAGCAGATGGTTCATCTCTGACACAACTCAGTTTCAGAAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGCAGATGGTTCATCTCTGACACAACTCAGTTTCAGAAAAGTTG  350

seq1  ATGGGTTATGTCTGGTTTAGATCAATGCATATGTAGAATGCACACAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTATGTCTGGTTTAGATCAATGCATATGTAGAATGCACACAACAG  400

seq1  AGATGTTAGGTACTGCAGCTTTCAGACAAGGTCATATACTTCAATAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAGGTACTGCAGCTTTCAGACAAGGTCATATACTTCAATAGCAG  450

seq1  CCATGTAAGACAGTGTTCTTTGATGCCTGGATGTAGAATCCCCCCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAGACAGTGTTCTTTGATGCCTGGATGTAGAATCCCCCCCCACA  500

seq1  GCAGCCTTCAGACTTAGGTTACATGAAACAGTGAGGGAGGGAAGGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTCAGACTTAGGTTACATGAAACAGTGAGGGAGGGAAGGTTGTT  550

seq1  TTAGTCAAAGAACTTCAAATGTCATAAAAGTTATTTAAATATAAAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAAAGAACTTCAAATGTCATAAAAGTTATTTAAATATAAAACACA  600

seq1  TTGCTTAAATATCCACCATGTGCCTCTTCTTTAAAAGAAAACCATTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAATATCCACCATGTGCCTCTTCTTTAAAAGAAAACCATTTACA  650

seq1  TCTTCCATTTTCTTCTTAGTGTAAAGTCTTTTGGCTACTTTATTCATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTTTCTTCTTAGTGTAAAGTCTTTTGGCTACTTTATTCATAAC  700

seq1  TTAACATTTCCTGGCAAGCAGTACATGATCCAGGCTAATGAGAGAGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTCCTGGCAAGCAGTACATGATCCAGGCTAATGAGAGAGAGTA  750

seq1  ACTTTTTACGAAACACATAAAAACCTCTATCAGTAGACCCTCAACTTACA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTTTTACGAAACACATAAAAACCTCTATCAGTAGACCCTC-ACTTACA  799

seq1  ATGGCTTAACTGTTTCAACTGTGGAGTTGGCCAAAATGATACACACTAAA  850
      |||||||||||||||||||||||||||| | | |||||||||||||||||
seq2  ATGGCTTAACTGTTTCAACTGTGGAGTTTGGCCAAATGATACACACTAAA  849

seq1  CTGAAACCACGCCTCGGATTTAGTCTCTCTCCTCTCAGTGCTGGGCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCACGCCTCGGATTTAGTCTCTCTCCTCTCAGTGCTGGGCAGCC  899

seq1  GTGGGCACAGAGCCCCTGTGGGGCCAACTGACAGCTGAGTAGAGCAAACA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACAGAGACCCTGTGGGGCCAACTGACAGCTGAGTAGAGCAAACA  949

seq1  AATGCTCAATTCAAGACGTTTTTTATTAGGGTGGGTTTATTGGGCTG  997
      ||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  AATGCTCAATTCAAGACGTTTTTTATTAGGGTGGG-TTAATGGGCTG  995