BAC Information

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BAC

Clone NameB6Ng01-024M12
Chromosome12 (Build37)
Map Location 110,796,736 - 110,932,677
singlet/doubletdoublet
Overlap geneGtl2, Rtl1, 6430411K18Rik
Upstream geneEvl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1
Downstream geneB830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024M12.bB6Ng01-024M12.g
ACCDH856311DH856312
length1,135862
definitionDH856311|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M12, 5' end.DH856312|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,931,514 - 110,932,677)(110,796,736 - 110,797,593)
sequence
gaattcacagaatgactgatacactcaagagtacacattcacttcttcaa
ggctgacccactggtatgtttgtcattcactcaaaagctttgtctttcat
cgctcacttctgccatgctggcctgctttctcatgcatccactcacagac
tccccatgtagtgattcgctgtgtaacttagtcattagtgcattactggc
ctgcgcctggcagtgacctccatgttttcatgacgtcatgggctcctggc
agtaagctgaagttgtgaaagacctcacagcatagtagcaaaacctctca
taaagcatccaaaagttcaaattgagcagagagcaccaactccttatttc
tgggccacacatgcacttgtcctgctaaatggttttatctattcccatag
agttccagggtcagcttcctctatgaactccatatttgacacaaggctga
cgaggataaaaggcaatagctattagtagaaatggatacttttatatcaa
atattttaccattctcagatactgagtaccagaaaataaaactcatggag
tatttgagctgactaatcaacatgctaacaagtaggaatttgtgccctag
ataggcaacaataactcatttagtgccatgggagaatataaatacacctt
agagagtggccatgtgcaccttattctagtaaaacaaaggcaggagggac
taagttccttcggtagacatcagtggctaaggactacttatcgcaaaata
tttaaattttgaccttacctggtctatttccaacttactttttaaaagat
tgggtttactaaaaataatgataaggacagttttgtaaactcatcgaagt
acaaaataaatgaaaaagaatgagtatttaatgtggtttggggcagggtt
ccttacatacaaaggcaacagattaaatctttttgtgttaaatgggatta
gaggaaaatttgagttgccaataatcttaattttcatggcagcgttctca
tctcatggggataatctcacattacatttctgggcatagatttttctgat
tagttagtcactcatttcaattaattatcaacgaaaaagatttacagcaa
ccaacaggggatgttttctctttttttggagactc
gaattctatatgctgcttcaagtgtgggaccccaaaagaatttcttcttt
ttcacttttccaaatgaatgggcctttcattgcggactctccctctggct
cttgtactgactaggattggaagcgcccttgtgagctggggccttcaaag
ggctgaggagaaaatgcaggccgagagaccagcttctcaaataggcttca
agcctccatgacctgagctcaccccctggaaatgtctggaaaacataatg
ggcaggttttctgtcttcaaagtttccatcaaaacctcttcaagttcttt
attgtttaggactgagacacttggggacagtaatggggactttcttttgt
atctgtcttgaaaggccaaaatatttttatattgctgtagacaaagccac
ctatttacaaatggactcttgttccgtcgtttcccaccaggaagaccgta
ctatgtttgtgtctctatgtattctggggtcttgaaacaggtttctcatg
gggatggccattcactagagcccagaggggcagaaggggaagtgtctacc
ctgccaagggggtctggggaaggaggggggctagtctcagatttgctcct
tgtatgtctagggtaaaccctgggagaatctggtggtaaaagaacatatg
ctgtgtttgccccacatctgccatttgtgtgtgttttctgggctacgggt
ttgcacactttggtggttaacatggtgggaggaagtaagaagggccaaga
gggcacgggtgctctggttttcctgctgggaggctgtttcactggtgtgt
gttacatcacataatgcattgtttagctgggttgagttgacaacagtatg
aagggacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110931514_110932677
seq2: B6Ng01-024M12.b_35_1169 (reverse)

seq1  GAGTCTACAGAAAAAAATGTAGAAAACCAACTCCCCCTGTTGTGTTTGGC  50
      |||||| || ||||      ||| ||  |||  ||||||||| |||  ||
seq2  GAGTCTCCAAAAAA------AGAGAA--AACATCCCCTGTTG-GTT--GC  39

seq1  TGTAAAATCTTTTCTGTTGATTTAATTTAATTTTTGAAAATGAGTGACTA  100
      ||| |||||||||  ||||||   | ||||||     |||||||||||| 
seq2  TGT-AAATCTTTTTCGTTGAT---AATTAATT----GAAATGAGTGACT-  80

seq1  AATTAATCAGGAAAAATCTATGCCCAGAAATTGTAAATGTTGGAGATTAT  150
      || |||||| |||||||||||||||||||| ||| |||||  ||||||||
seq2  AACTAATCA-GAAAAATCTATGCCCAGAAA-TGT-AATGT--GAGATTAT  125

seq1  CCCCATGAGATGAGAACGCTGGCCATGAAAATTAAGATTTATGGGCAACT  200
      |||||||||||||||||||| |||||||||||||||| |||| |||||||
seq2  CCCCATGAGATGAGAACGCT-GCCATGAAAATTAAGA-TTATTGGCAACT  173

seq1  CAAATTTTTCCTCTTAATCCCATTTAACACAAAAAGATTTAATCTGTTGC  250
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAA-TTTTCCTC-TAATCCCATTTAACACAAAAAGATTTAATCTGTTGC  221

seq1  CTTTGTATGTAAGGAACCCTGCCCCAAACCACATTAAATACTCATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATGTAAGGAACCCTGCCCCAAACCACATTAAATACTCATTCTTT  271

seq1  TTCATTTATTTTGTACTTCGATGAGTTTACAAAACTGTCCTTATCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCATTTATTTTGTACTTCGATGAGTTTACAAAACTGTCCTTATCATTA-  320

seq1  TTTTTAGTAAA-CCAATCTTTTAAAAAGTAAGTTGGAAATAGACCAGGTA  399
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTAAACCCAATCTTTTAAAAAGTAAGTTGGAAATAGACCAGGTA  370

seq1  AGGTCAAAATTTAAATATTTTGCGATAAGTAGTCCTTAGCCACTGATGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAATTTAAATATTTTGCGATAAGTAGTCCTTAGCCACTGATGTC  420

seq1  TACCGAAGGAACTTAGTCCCTCCTGCCTTTGTTTTACTAGAATAAGGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAAGGAACTTAGTCCCTCCTGCCTTTGTTTTACTAGAATAAGGTGC  470

seq1  ACATGGCCACTCTCTAAGGTGTATTTATATTCTCCCATGGCACTAAATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCACTCTCTAAGGTGTATTTATATTCTCCCATGGCACTAAATGA  520

seq1  GTTATTGTTGCCTATCTAGGGCACAAATTCCTACTTGTTAGCATGTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTTGCCTATCTAGGGCACAAATTCCTACTTGTTAGCATGTTGAT  570

seq1  TAGTCAGCTCAAATACTCCATGAGTTTTATTTTCTGGTACTCAGTATCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGCTCAAATACTCCATGAGTTTTATTTTCTGGTACTCAGTATCTG  620

seq1  AGAATGGTAAAATATTTGATATAAAAGTATCCATTTCTACTAATAGCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTAAAATATTTGATATAAAAGTATCCATTTCTACTAATAGCTAT  670

seq1  TGCCTTTTATCCTCGTCAGCCTTGTGTCAAATATGGAGTTCATAGAGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTATCCTCGTCAGCCTTGTGTCAAATATGGAGTTCATAGAGGAA  720

seq1  GCTGACCCTGGAACTCTATGGGAATAGATAAAACCATTTAGCAGGACAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCCTGGAACTCTATGGGAATAGATAAAACCATTTAGCAGGACAAG  770

seq1  TGCATGTGTGGCCCAGAAATAAGGAGTTGGTGCTCTCTGCTCAATTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGGCCCAGAAATAAGGAGTTGGTGCTCTCTGCTCAATTTGAA  820

seq1  CTTTTGGATGCTTTATGAGAGGTTTTGCTACTATGCTGTGAGGTCTTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGATGCTTTATGAGAGGTTTTGCTACTATGCTGTGAGGTCTTTCA  870

seq1  CAACTTCAGCTTACTGCCAGGAGCCCATGACGTCATGAAAACATGGAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAGCTTACTGCCAGGAGCCCATGACGTCATGAAAACATGGAGGT  920

seq1  CACTGCCAGGCGCAGGCCAGTAATGCACTAATGACTAAGTTACACAGCGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAGGCGCAGGCCAGTAATGCACTAATGACTAAGTTACACAGCGA  970

seq1  ATCACTACATGGGGAGTCTGTGAGTGGATGCATGAGAAAGCAGGCCAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTACATGGGGAGTCTGTGAGTGGATGCATGAGAAAGCAGGCCAGCA  1020

seq1  TGGCAGAAGTGAGCGATGAAAGACAAAGCTTTTGAGTGAATGACAAACAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAGTGAGCGATGAAAGACAAAGCTTTTGAGTGAATGACAAACAT  1070

seq1  ACCAGTGGGTCAGCCTTGAAGAAGTGAATGTGTACTCTTGAGTGTATCAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGGTCAGCCTTGAAGAAGTGAATGTGTACTCTTGAGTGTATCAG  1120

seq1  TCATTCTGTGAATTC  1164
      |||||||||||||||
seq2  TCATTCTGTGAATTC  1135

seq1: chr12_110796736_110797593
seq2: B6Ng01-024M12.g_68_929

seq1  GAATTCTATAGGCTGCTTCAAGTGTGGGACCCCAAAAGAATTTCTTCTTT  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATGCTGCTTCAAGTGTGGGACCCCAAAAGAATTTCTTCTTT  50

seq1  TTCACTTTTCCAAATGAATGGGCCTTTCATTGCGGACTCTCCCTCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTCCAAATGAATGGGCCTTTCATTGCGGACTCTCCCTCTGGCT  100

seq1  CTTGTACTGACTAGGATTGGAAGCGCCCTTGTGAGCTGGGGCCTTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTGACTAGGATTGGAAGCGCCCTTGTGAGCTGGGGCCTTCAAAG  150

seq1  GGCTGAGGAGAAAATGCAGGCCGAGAGACCAGCTTCTCAAATAGGCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGAGAAAATGCAGGCCGAGAGACCAGCTTCTCAAATAGGCTTCA  200

seq1  AGCCTCCATGACCTGAGCTCACCCCCTGGAAATGTCTGGAAAACATAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCATGACCTGAGCTCACCCCCTGGAAATGTCTGGAAAACATAATG  250

seq1  GGCAGGTTTTCTGTCTTCAAAGTTTCCATCAAAACCTCTTCAAGTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTTTCTGTCTTCAAAGTTTCCATCAAAACCTCTTCAAGTTCTTT  300

seq1  ATTGTTTAGGACTGAGACACTTGGGGACAGTAATGGGGACTTTCTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTAGGACTGAGACACTTGGGGACAGTAATGGGGACTTTCTTTTGT  350

seq1  ATCTGTCTTGAAAGGCCAAAATATTTTTATATTGCTGTAGACAAAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTGAAAGGCCAAAATATTTTTATATTGCTGTAGACAAAGCCAC  400

seq1  CTATTTACAAATGGACTCTTGTTCCGTCGTTTCCCACCAGGAAGACCGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACAAATGGACTCTTGTTCCGTCGTTTCCCACCAGGAAGACCGTA  450

seq1  CTATGTTTGTGTCTCTATGTATTCTGGGGTCTTGAAACAGGTTTCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTGTGTCTCTATGTATTCTGGGGTCTTGAAACAGGTTTCTCATG  500

seq1  GGGATGGCCATTCACTAGAGCCCAGAGGGGCAGAAGGGGAAGTGTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCCATTCACTAGAGCCCAGAGGGGCAGAAGGGGAAGTGTCTACC  550

seq1  CTGCCAAGGGGGTCTGGGGAAGGAGGGGGGCTAGTCTCAGATTTGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGGGGTCTGGGGAAGGAGGGGGGCTAGTCTCAGATTTGCTCCT  600

seq1  TGTATGTCTAGGGTAAACCCTGGGAGAATCTGGTGGTAAAAGAACATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCTAGGGTAAACCCTGGGAGAATCTGGTGGTAAAAGAACATATG  650

seq1  CTGTGTTTGCCCCACATCTGCCATTTGTGTGTG-TTTCTGGGCTACGGGT  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTGTTTGCCCCACATCTGCCATTTGTGTGTGTTTTCTGGGCTACGGGT  700

seq1  TTGCACACTTTGGTGGTTAACATGGTGGGAGGAAGTAAGAAGGGCCAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACTTTGGTGGTTAACATGGTGGGAGGAAGTAAGAAGGGCCAAGA  750

seq1  GGGCACGGGTGCTCTGGTTTTCCTGCTGGGAGGCTGTTTCACTGGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGGGTGCTCTGGTTTTCCTGCTGGGAGGCTGTTTCACTGGTGTGT  800

seq1  GTTACATCACATAATGCA-TGTTTAGCTGGG-TGAG-TGACAACAGTATG  846
      |||||||||||||||||| |||||||||||| |||| |||||||||||||
seq2  GTTACATCACATAATGCATTGTTTAGCTGGGTTGAGTTGACAACAGTATG  850

seq1  AAGGGACAGAGA  858
      ||||||||||||
seq2  AAGGGACAGAGA  862