BAC Information

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BAC

Clone NameB6Ng01-024M20
Chromosome12 (Build37)
Map Location 103,532,845 - 103,533,921
singlet/doubletsinglet
Overlap geneRin3
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4
Downstream geneLgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024M20.bB6Ng01-024M20.g
ACCDH856327DH856328
length1,0251,083
definitionDH856327|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M20, 5' end.DH856328|Mus musculus domesticus DNA, BAC clone: B6Ng01-024M20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggacccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaattttcctagacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccatggaaggagttacagaaacaaagtatggagctgagatg
aaaggatggaccatgtagagacgccatatccagggatccacccataatca
gcttccaatgctgacaccattgcatacactagcaagattttactgaagga
cccagatgtagcttgtctcttggtgagactatgctgggctagcaaaccag
aagtggatgctcacagtagctatgaatgaatcacaggctcctattgagga
cttaggatagtaccaggacctagatcttcaccgtgtgacacttgactacg
tacctgacctgatctagctgcaaat
gaattccaggggcacgtgaaccaggtgtctggagcatacgcttgccctga
gactcctcctatggctctcactctctcccacctcagtacctcaccctgcc
tcaagttcaccggccaggatctggccagctcctgctgctatgacaaaaaa
aacgccagagaaaacagcttctaaacagcagtggtttccctctcacagat
ttggaagctgagaaatcccaaatcaaagtgccaaatccaagtgccaagag
gttcagtgttagtaaagccattttctgtttctcagaaggctctcctgcct
ctgtcctcacatggaaaagagccatggcatgttctgggcctctcttatga
ggaaaaaacaaatctaccattgaggcttcaccctccctcgtggtatagtc
ctttcctacaggccccacctcctaactccatcccatagggtaagactttg
aagtgggtatttgcgagcacacagacacgggtttgtgacagtatcttcag
catcctcccacttgaacagtcacatctgtgcatgtgtcccatctgatggg
gcaactgggcatatattgacagggcataaccgagtggttggtttggggcc
agagcaagcagcactgtttggcatttaggggtatctgggaggtggcttct
cccttagaactggcaggagaatactcagcctgaggcacacacatgacaca
cttgacacccaacagaggaaatgtggccacagctgctgtttggaagagta
ccaggcgactcgatgtcacagatacccgggagacgtgatgctttggtggt
ttgtgcaagatgggggtcaggcccatgtgtcctgtctgcattctctcaag
ctttagcggtgacccaaggaggagcagctgctagaaagccagccttgtgt
cctgagtcacctttccgttcagaggtggagcctcctttgtcaaagcacac
ttctcccctgccacagaccacccatgcgtttctcagtggcctctgaagta
aggtgggggcatggtgccttttttcttgttttactgcttgaggaacctca
gattccaatgagggttgggggaagagcaaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103532845_103533921
seq2: B6Ng01-024M20.g_70_1152

seq1  GAATTCCAGGGGCACGTGAACCAGGTGTCTGGAGCATACGCTTGCCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGCACGTGAACCAGGTGTCTGGAGCATACGCTTGCCCTGA  50

seq1  GACTCCTCCTATGGCTCTCACTCTCTCCCACCTCAGTACCTCACCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCCTATGGCTCTCACTCTCTCCCACCTCAGTACCTCACCCTGCC  100

seq1  TCAAGTTCACCGGCCAGGATCTGGCCAGCTCCTGCTGCTATGACAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCACCGGCCAGGATCTGGCCAGCTCCTGCTGCTATGACAAAAAA  150

seq1  AACGCCAGAGAAAACAGCTTCTAAACAGCAGTGGTTTCCCTCTCACAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCAGAGAAAACAGCTTCTAAACAGCAGTGGTTTCCCTCTCACAGAT  200

seq1  TTGGAAGCTGAGAAATCCCAAATCAAAGTGCCAAATCCAAGTGCCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCTGAGAAATCCCAAATCAAAGTGCCAAATCCAAGTGCCAAGAG  250

seq1  GTTCAGTGTTAGTAAAGCCATTTTCTGTTTCTCAGAAGGCTCTCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTTAGTAAAGCCATTTTCTGTTTCTCAGAAGGCTCTCCTGCCT  300

seq1  CTGTCCTCACATGGAAAAGAGCCATGGCATGTTCTGGGCCTCTCTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCACATGGAAAAGAGCCATGGCATGTTCTGGGCCTCTCTTATGA  350

seq1  GGAAAAAACAAATCTACCATTGAGGCTTCACCCTCCCTCGTGGTATAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAACAAATCTACCATTGAGGCTTCACCCTCCCTCGTGGTATAGTC  400

seq1  CTTTCCTACAGGCCCCACCTCCTAACTCCATCCCATAGGGTAAGACTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACAGGCCCCACCTCCTAACTCCATCCCATAGGGTAAGACTTTG  450

seq1  AAGTGGGTATTTGCGAGCACACAGACACGGGTTTGTGACAGTATCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTATTTGCGAGCACACAGACACGGGTTTGTGACAGTATCTTCAG  500

seq1  CATCCTCCCACTTGAACAGTCACATCTGTGCATGTGTCCCATCTGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCCACTTGAACAGTCACATCTGTGCATGTGTCCCATCTGATGGG  550

seq1  GCAACTGGGCATATATTGACAGGGCATAACCGAGTGGTTGGTTTGGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGGCATATATTGACAGGGCATAACCGAGTGGTTGGTTTGGGGCC  600

seq1  AGAGCAAGCAGCACTGTTTGGCATTTAGGGGTATCTGGGAGGTGGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGCAGCACTGTTTGGCATTTAGGGGTATCTGGGAGGTGGCTTCT  650

seq1  CCCTTAGAACTGGCAGGAGAATACTCAGCCTGAGGCACACACATGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGAACTGGCAGGAGAATACTCAGCCTGAGGCACACACATGACACA  700

seq1  CTTGACACCCAACAGAGGAAATGTGGCCACAGCTGCTGTTTGGAAGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACCCAACAGAGGAAATGTGGCCACAGCTGCTGTTTGGAAGAGTA  750

seq1  CCAGGCGACTCGATGTCACAGATACCCGGGAGACGTGATGCTTTGGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGACTCGATGTCACAGATACCCGGGAGACGTGATGCTTTGGTGGT  800

seq1  TTGTGCAAGATGGGGGTCAGGCCCATGTGTCCTGTCTGCATTCTCTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAGATGGGGGTCAGGCCCATGTGTCCTGTCTGCATTCTCTCAAG  850

seq1  C-TTAGCGGTGACCCAAGGAGGAGCAGCTGCTAG-AAGCCAGCCTTGTGT  898
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTAGCGGTGACCCAAGGAGGAGCAGCTGCTAGAAAGCCAGCCTTGTGT  900

seq1  TCTGAGTCACCTTTCCGTTCAGAGGTGGGAGCTCCTTTGTCAAAGCACAC  948
       |||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CCTGAGTCACCTTTCCGTTCAGAGGTGGAGCCTCCTTTGTCAAAGCACAC  950

seq1  TTCCTCCCCTGCCACAGA-CACCCATGCGTTCTCCAGTGGCCCTCTGAAG  997
      || ||||||||||||||| ||||||||||||   |||||| |||||||||
seq2  TT-CTCCCCTGCCACAGACCACCCATGCGTTTCTCAGTGG-CCTCTGAAG  998

seq1  T-AGGTGGGGGCATGGTGCC-TTTTTCTTGTTTTACTGC-TGAGGAAACT  1044
      | |||||||||||||||||| |||||||||||||||||| ||||||| ||
seq2  TAAGGTGGGGGCATGGTGCCTTTTTTCTTGTTTTACTGCTTGAGGAACCT  1048

seq1  CAGATT-CATAGAGGGTT-GGGGAGGAGCAAAAGT  1077
      |||||| ||  ||||||| ||||| ||||||||||
seq2  CAGATTCCAATGAGGGTTGGGGGAAGAGCAAAAGT  1083