BAC Information

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BAC

Clone NameB6Ng01-024P06
Chromosome12 (Build37)
Map Location 43,404,777 - 43,498,198
singlet/doubletdoublet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024P06.bB6Ng01-024P06.g
ACCDH856436DH856437
length1,1211,139
definitionDH856436|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P06, 5' end.DH856437|Mus musculus domesticus DNA, BAC clone: B6Ng01-024P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,404,777 - 43,405,906)(43,497,045 - 43,498,198)
sequence
gaattcattgtttagcactgtatcccccctccttttatagtgttatttgg
ttatctgtagtctaacttcttgagttctttggatttattggatattagcc
ctctatcagatgtaggattggtaaaaatcttttcccaatctgttggttgc
cgtttgaaccccttttgtgatattatgaaacccatgacagcaatgaagca
cactcattgacaatgatttccacagttccccatgcctccttatttctctt
acatgtagccttttttattttagaggatagcagaaaacaaagatataaat
ttgaaattaaaatatgaatatgtacttttatggtataaagcagttttaga
catatgttcctttgttgaattataatatgtggaaggccagcttcacatct
gaagaaagggtgaatggagctctgatactgtttaggacttcctactaccc
ctctatttttccttcacttactaatactcagagactcaaagattcctagg
gctcccaggggttttgaaaatcttttgagttttgctgtgggccacctcat
tttcactgtggacctcttatattcttgacattctgaaaggaatttattat
gtaaaatggtcatggttccaaacttctaggcctcaaattctaatgatatc
ctgtttcatatttcaatcatatttacttgaacatttggaatgaaatggcc
ttaggacactagagattctgataacaccatacttataaaaaagggcttcc
tggaaacattgattgatgactgacatgggatggatcagtattagaaacac
caatagtataaatgttccaactaaccaggagtacatgttaattgtcacag
cattggaagctgtgtgtgtggtctcatcccattgcttactaaatgggcaa
attaagctagaggagtcctctcagtacattcactttgaaaatgatcattt
gcaagatgttcctaatacatcaagctaacatgtaaaaatttaatatgatt
cccatagcacatgacagtgttgaaaattttttatcatctatttggttcct
gctggaaccatgatttgggaaaaagaaagacttcttttaatctttaggca
ctgaaaggaatggtgccctct
gaattcttatcaaacatatgctaaaaaatactgaattcttaataactaaa
catgtgttttttcttaatatgctggtaaatgatcaaaagaaaggaaaaac
ggattactgtgggaggaaggaactatataactgttgattgttttgtccgt
atcaataattcaaacgtcacgaaaaatgcatcacattgtcaaaatatgtg
acataaaatgagagaatgtggaaaacaggtagtccttgaatgtcctcagg
aatgattgtccatactacttctacagaacagcaactgaactgcccctaag
agagcagtatatacagatgtattaatctttcaggcttaattcttaagtcc
taagtttaatgaataaataggatcttatggtttccaaatgaccatttagg
aaatggatatgcaaccccttgactctgtaagtaagcccgcgttctgaaaa
aagtttaaaaatacctccatgaaaattttcttacccattatacactttta
cagagaagcacagaattacagaagttacaagtttgaccttggtattttga
acactgccaagagcaatattctcttaaattttctcctcctaattagtaca
agctgtctcttgctttttatctctccacatttaagtggaaatatgaggca
aaaaaagacaaattgttctttgctcctttgctaactgccactaagacaaa
tggtactcctgtaggttatgggagcacttcaaggagctaaaagcccttta
ttgcattccactcgtgtcatgtgtaataaaggaatgaagaatgaacagca
catcatatcacttagataatgaaccacctactgcacttgaagcattgcat
gtttcttagacacccattccactgttcagtccttaattcacatatattta
gagaacaaggagatgaaaaatatgtgagatagaggctctgagcattgctg
gatatatacttgacttatagaattaataaggcagatgcctaaactcattt
tatgatgagaaagaacagtaccaccttcattcagattatagcaaacacat
gtgtgggtgaggattattagaagaataaccctggatattgctaaggatgc
tatttctttttacaatgacattttttcttgaacacatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_43404777_43405906
seq2: B6Ng01-024P06.b_44_1164

seq1  GAATTCATTGTTTAGCACTGTATCCCCCCTCCTTTTATAGTGTTATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTAGCACTGTATCCCCCCTCCTTTTATAGTGTTATTTGG  50

seq1  TTATCTGTAGTCTAACTTCTTGAGTTCTTTGGATTTATTGGATATTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAGTCTAACTTCTTGAGTTCTTTGGATTTATTGGATATTAGCC  100

seq1  CTCTATCAGATGTAGGATTGGTAAAAATCTTTTCCCAATCTGTTGGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCAGATGTAGGATTGGTAAAAATCTTTTCCCAATCTGTTGGTTGC  150

seq1  CGTTTGAACCCCTTTTGTGATATTATGAAACCCATGACAGCAATGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGAACCCCTTTTGTGATATTATGAAACCCATGACAGCAATGAAGCA  200

seq1  CACTCATTGACAATGATTTCCACAGTTCCCCATGCCTCCTTATTTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTGACAATGATTTCCACAGTTCCCCATGCCTCCTTATTTCTCTT  250

seq1  ACATGTAGCCTTTTTTATTTTAGAGGATAGCAGAAAACAAAGATATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGCCTTTTTTATTTTAGAGGATAGCAGAAAACAAAGATATAAAT  300

seq1  TTGAAATTAAAATATGAATATGTACTTTTATGGTATAAAGCAGTTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTAAAATATGAATATGTACTTTTATGGTATAAAGCAGTTTTAGA  350

seq1  CATATGTTCCTTTGTTGAATTATAATATGTGGAAGGCCAGCTTCACATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTCCTTTGTTGAATTATAATATGTGGAAGGCCAGCTTCACATCT  400

seq1  GAAGAAAGGGTGAATGGAGCTCTGATACTGTTTAGGACTTCCTACTACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGTGAATGGAGCTCTGATACTGTTTAGGACTTCCTACTACCC  450

seq1  CTCTATTTTTCCTTCACTTACTAATACTCAGAGACTCAAAGATTCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTTCCTTCACTTACTAATACTCAGAGACTCAAAGATTCCTAGG  500

seq1  GCTCCCAGGGGTTTTGAAAATCTTTTGAGTTTTGCTGTGGGCCACCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGGGGTTTTGAAAATCTTTTGAGTTTTGCTGTGGGCCACCTCAT  550

seq1  TTTCACTGTGGACCTCTTATATTCTTGACATTCTGAAAGGAATTTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTGGACCTCTTATATTCTTGACATTCTGAAAGGAATTTATTAT  600

seq1  GTAAAATGGTCATGGTTCCAAACTTCTAGGCCTCAAATTCTAATGATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGTCATGGTTCCAAACTTCTAGGCCTCAAATTCTAATGATATC  650

seq1  CTGTTTCATATTTCAATCATATTTACTTGAACATTTGGAATGAAATGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCATATTTCAATCATATTTACTTGAACATTTGGAATGAAATGGCC  700

seq1  TTAGGACACTAGAGATTCTGATAACACCATACTTATAAAAAAGGGCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACACTAGAGATTCTGATAACACCATACTTATAAAAAAGGGCTTCC  750

seq1  TGGAAACATTGATTGATGACTGACATGGGATGGATCAGTATTAGAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATTGATTGATGACTGACATGGGATGGATCAGTATTAGAAACAC  800

seq1  CAATAGTATAAATGTTCCAACTAACCAGGAGTACATGTTAATTGTCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTATAAATGTTCCAACTAACCAGGAGTACATGTTAATTGTCACAG  850

seq1  CATTGGAAGCTGTTGTGTGTGGTCTCATCCCATTGCTTACTAAATGGGCA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAGCTG-TGTGTGTGGTCTCATCCCATTGCTTACTAAATGGGCA  899

seq1  AATTAAGCTAGAGGAGTCCTCTCAGTACATTCACTTTGAAAATGATCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCTAGAGGAGTCCTCTCAGTACATTCACTTTGAAAATGATCATT  949

seq1  TGCAAGATGTTCCTAATACATCAAGCTAACATGTAAACACTTAATATGAT  1000
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  TGCAAGATGTTCCTAATACATCAAGCTAACATGTAAAAATTTAATATGAT  999

seq1  TCCCATAGCACATGACAGTTGTTGAAAATTTTTTATCATCTTATTTGGTT  1050
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TCCCATAGCACATGACAG-TGTTGAAAATTTTTTATCATC-TATTTGGTT  1047

seq1  CCTGCTGTGACACCATGATTTGGGAAAAAGAAAAGACTTCTTTTTAGTCA  1100
      ||||||| || ||||||||||||||||||| ||||||||| ||||| || 
seq2  CCTGCTG-GA-ACCATGATTTGGGAAAAAG-AAAGACTTC-TTTTAATCT  1093

seq1  TTATGCACTGAAGAGGAGATGGTGCCCTCT  1130
      ||| |||||||| |||| ||||||||||||
seq2  TTAGGCACTGAA-AGGA-ATGGTGCCCTCT  1121

seq1: chr12_43497045_43498198
seq2: B6Ng01-024P06.g_69_1207 (reverse)

seq1  CTATGTGTTAAAAGAAAAAAATGTCATTGTGAAAAG-AATAGCATCTCTT  49
      ||||||||| ||   ||||||||||||||| ||||| ||||||||| |||
seq2  CTATGTGTTCAA--GAAAAAATGTCATTGTAAAAAGAAATAGCATC-CTT  47

seq1  AGCCACTAATCCAGGTGTATTCTTCTATATAATCCTCA-CCACACATTGT  98
      ||| |   |||||||  |||||||||| |||||||||| ||||||| |||
seq2  AGCAA--TATCCAGGGTTATTCTTCTA-ATAATCCTCACCCACACA-TGT  93

seq1  GTTTTGCCTATAATTCTTGAATGAAGGGTGGTACTGTTCTTTCTCATCCA  148
      ||||   |||||||   |||||||| ||||||||||||||||||||| ||
seq2  GTTT--GCTATAAT--CTGAATGAA-GGTGGTACTGTTCTTTCTCAT-CA  137

seq1  TAAAATGAGTTTTAGGCATCTGCCTTTATTAATTCTAT-AGTCAAGTATA  197
      ||||||||| |||||||||||||| ||||||||||||| |||||||||||
seq2  TAAAATGAG-TTTAGGCATCTGCC-TTATTAATTCTATAAGTCAAGTATA  185

seq1  TATCCAGCAATGCTCAGAGCCTCTTATCTTCACATATTTTTTCATCTCCT  247
      ||||||||||||||||||||||| |||| ||||||| |||||||||||||
seq2  TATCCAGCAATGCTCAGAGCCTC-TATC-TCACATA-TTTTTCATCTCCT  232

seq1  TGTTCTCTAAATATATGTGAATTAAGGACTGAACAGTGGAATGGGTGTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTAAATATATGTGAATTAAGGACTGAACAGTGGAATGGGTGTCT  282

seq1  AAGAAACATGCAATGCTTCAAGTGCAGTAGGTGGTTCATTATCTAAGTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATGCAATGCTTCAAGTGCAGTAGGTGGTTCATTATCTAAGTGA  332

seq1  TATGATGTGCTGTTCATTCTTCATTCCTTTATTACACATGACACGAGTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTGCTGTTCATTCTTCATTCCTTTATTACACATGACACGAGTGG  382

seq1  AATGCAATAAAGGGCTTTTAGCTCCTTGAAGTGCTCCCATAACCTACAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATAAAGGGCTTTTAGCTCCTTGAAGTGCTCCCATAACCTACAGG  432

seq1  AGTACCATTTGTCTTAGTGGCAGTTAGCAAAGGAGCAAAGAACAATTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATTTGTCTTAGTGGCAGTTAGCAAAGGAGCAAAGAACAATTTGT  482

seq1  CTTTTTTTGCCTCATATTTCCACTTAAATGTGGAGAGATAAAAAGCAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGCCTCATATTTCCACTTAAATGTGGAGAGATAAAAAGCAAGA  532

seq1  GACAGCTTGTACTAATTAGGAGGAGAAAATTTAAGAGAATATTGCTCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTGTACTAATTAGGAGGAGAAAATTTAAGAGAATATTGCTCTTG  582

seq1  GCAGTGTTCAAAATACCAAGGTCAAACTTGTAACTTCTGTAATTCTGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTCAAAATACCAAGGTCAAACTTGTAACTTCTGTAATTCTGTGC  632

seq1  TTCTCTGTAAAAGTGTATAATGGGTAAGAAAATTTTCATGGAGGTATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTAAAAGTGTATAATGGGTAAGAAAATTTTCATGGAGGTATTTT  682

seq1  TAAACTTTTTTCAGAACGCGGGCTTACTTACAGAGTCAAGGGGTTGCATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTTTTCAGAACGCGGGCTTACTTACAGAGTCAAGGGGTTGCATA  732

seq1  TCCATTTCCTAAATGGTCATTTGGAAACCATAAGATCCTATTTATTCATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCCTAAATGGTCATTTGGAAACCATAAGATCCTATTTATTCATT  782

seq1  AAACTTAGGACTTAAGAATTAAGCCTGAAAGATTAATACATCTGTATATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGGACTTAAGAATTAAGCCTGAAAGATTAATACATCTGTATATA  832

seq1  CTGCTCTCTTAGGGGCAGTTCAGTTGCTGTTCTGTAGAAGTAGTATGGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTTAGGGGCAGTTCAGTTGCTGTTCTGTAGAAGTAGTATGGAC  882

seq1  AATCATTCCTGAGGACATTCAAGGACTACCTGTTTTCCACATTCTCTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCCTGAGGACATTCAAGGACTACCTGTTTTCCACATTCTCTCAT  932

seq1  TTTATGTCACATATTTTGACAATGTGATGCATTTTTCGTGACGTTTGAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCACATATTTTGACAATGTGATGCATTTTTCGTGACGTTTGAAT  982

seq1  TATTGATACGGACAAAACAATCAACAGTTATATAGTTCCTTCCTCCCACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATACGGACAAAACAATCAACAGTTATATAGTTCCTTCCTCCCACA  1032

seq1  GTAATCCGTTTTTCCTTTCTTTTGATCATTTACCAGCATATTAAGAAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCGTTTTTCCTTTCTTTTGATCATTTACCAGCATATTAAGAAAAA  1082

seq1  ACACATGTTTAGTTATTAAGAATTCAGTATTTTTTAGCATATGTTTGATA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTTTAGTTATTAAGAATTCAGTATTTTTTAGCATATGTTTGATA  1132

seq1  AGAATTC  1154
      |||||||
seq2  AGAATTC  1139