BAC Information

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BAC

Clone NameB6Ng01-025I15
Chromosome12 (Build37)6 (Build37)
Map Location 62,631,061 - 62,632,160117,053,557 - 117,053,737
singlet/doubletsingletsinglet
Overlap geneLrfn5
Upstream genePpia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
Downstream geneLOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025I15.bB6Ng01-025I15.g
ACCDH856858DH856859
length1,097852
definitionDH856858|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I15, 5' end.DH856859|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,631,061 - 62,632,160)(117,053,557 - 117,053,737)
sequence
gaattcttaagaaaagtttgaaaaaaaaaaaagactttaagacatcctca
atcacaactagtgtgttgaatttaaacaggaacagaagcctatcaacact
actcatcttaacgtgcttgctttgcccttttcagctccatttaagaagtg
ctacccacacaggaaggaacattattcttactctctagaggccatgtttc
tttgacctctccaaaccaaagaaggactttccccaggctcagcacacagt
ctcctgctaagcttaccccgagcctcatttgctgcctccacaatagattt
tcctggacctccgtgacaccacctccaaaactataggctatccaaattaa
agcaatgtactactggaagcatattaactacgtgaaaactaactctttcc
ttctttcgttgtctggaatgaagtatttttttctcacttgatttttaaaa
aattgttttcattaatttttaaacaatttaatacatctgctatatttgaa
aaaaaaaacagagcaaatgtacacattcaagcaatattaaaagaattggg
aagactttaatcataccatgcaaaaggggagaaattctactatatccaga
attttattagcacaagatttctgggcattggtaaatatcaaatgattaat
taatattagtggtaaatataaaaataatagtaaaaatttatgaaataaaa
atgaaaatatttctgtatcataaaataagtcatgtatatttacttctgaa
ataactgtgtttaatacattgaatcctttcattgttttcacacaatacta
caaactcctttagttttatattttgatttctttttatttttgtatgtaaa
agtgttttgtctgtcttgtatgcatatataacatgaattgcttatagttt
gtatatcaaactgatgctttgttaagcatgaagacttattcatgtgcagg
aagacatataaatctgatcacagatgtttttattcgctatgtcccattca
tagaagtatatctatttaaaatgaatattcatggtacttatggtaattat
gggagactggagtcattggtgctgtggacagtgtggaacatattttt
gaattcacacagactgaggcagcatgcttagggcctgcaggactctgcca
gagagtctcctaatgctaaaaattatcagaagaacaaagtatggatactc
tgattttcttagaaggggaaacaaaatactcatgggaagagatacagaga
caaagtatggagcagaaactgaaggaaagaccatccagagactgccccac
cttgggatccattctatatacagtcaacaaactcagatactattgtggat
gccaacaagtgcttgctgacaaaaggtatatcaggatatagctatctctt
gagaggctctgtcagtgcctgacaaatgcagaggtggatgctctcagcca
aaagttggactgagcacaaggtggaggagctagagaaagtactgaaggac
ctgaagcagattgcagccacataggagcgacaacaatataaacaaaccag
tacccccgagctcccaggaactaaaccgcaaaacaaagagtgcacatgga
gggactcatgactccagttgcatatgtagcagaggatgacctagtcagtc
atcagtgggaggagaggccctaggtcctgtgaaggcttaatgttccagtg
taggggaatccaggacagaaaagaggaagtgagtgggttggtgatcaggg
gcaggagggataggatagggagttttaggcagggaaaactccatagctat
ttcctcagtagaaatacccccgtccaggggaggaggctcatgagactcaa
aagtaaacggatttcataagtctgggaagctgtaagatacagggtcacag
gccccttcccagtttataatgagtaaacaatgccaaaggggaagactttg
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62631061_62632160
seq2: B6Ng01-025I15.b_43_1139

seq1  GAATTCTTAAGAAAAGTTTGAAAAAAAAAAAAGACTTTAAGACATCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGAAAAGTTTGAAAAAAAAAAAAGACTTTAAGACATCCTCA  50

seq1  ATCACAACTAGTGTGTTGAATTTAAACAGGAACAGAAGCCTATCAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACTAGTGTGTTGAATTTAAACAGGAACAGAAGCCTATCAACACT  100

seq1  ACTCATCTTAACGTGCTTGCTTTGCCCTTTTCAGCTCCATTTAAGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTTAACGTGCTTGCTTTGCCCTTTTCAGCTCCATTTAAGAAGTG  150

seq1  CTACCCACACAGGAAGGAACATTATTCTTACTCTCTAGAGGCCATGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACACAGGAAGGAACATTATTCTTACTCTCTAGAGGCCATGTTTC  200

seq1  TTTGACCTCTCCAAACCAAAGAAGGACTTTCCCCAGGCTCAGCACACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTCTCCAAACCAAAGAAGGACTTTCCCCAGGCTCAGCACACAGT  250

seq1  CTCCTGCTAAGCTTACCCCGAGCCTCATTTGCTGCCTCCACAATAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTAAGCTTACCCCGAGCCTCATTTGCTGCCTCCACAATAGATTT  300

seq1  TCCTGGACCTCCGTGACACCACCTCCAAAACTATAGGCTATCCAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACCTCCGTGACACCACCTCCAAAACTATAGGCTATCCAAATTAA  350

seq1  AGCAATGTACTACTGGAAGCATATTAACTACGTGAAAACTAACTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTACTACTGGAAGCATATTAACTACGTGAAAACTAACTCTTTCC  400

seq1  TTCTTTCGTTGTCTGGAATGAAGTATTTTTTTCTCACTTGATTTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCGTTGTCTGGAATGAAGTATTTTTTTCTCACTTGATTTTTAAAA  450

seq1  AATTGTTTTCATTAATTTTTAAACAATTTAATACATCTGCTATATTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTCATTAATTTTTAAACAATTTAATACATCTGCTATATTTGAA  500

seq1  AAAAAAAACAGAGCAAATGTACACATTCAAGCAATATTAAAAGAATTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAGAGCAAATGTACACATTCAAGCAATATTAAAAGAATTGGG  550

seq1  AAGACTTTAATCATACCATGCAAAAGGGGAGAAATTCTACTATATCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTAATCATACCATGCAAAAGGGGAGAAATTCTACTATATCCAGA  600

seq1  ATTTTATTAGCACAAGATTTCTGGGCATTGGTAAATATCAAATGATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAGCACAAGATTTCTGGGCATTGGTAAATATCAAATGATTAAT  650

seq1  TAATATTAGTGGTAAATATAAAAATAATAGTAAAAATTTATGAAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAGTGGTAAATATAAAAATAATAGTAAAAATTTATGAAATAAAA  700

seq1  ATGAAAATATTTCTGTATCATAAAATAAGTCATGTATATTTACTTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATATTTCTGTATCATAAAATAAGTCATGTATATTTACTTCTGAA  750

seq1  ATAACTGTGTTTAATACATTGAATCCTTTCATTGTTTTCACACAATACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTGTTTAATACATTGAATCCTTTCATTGTTTTCACACAATACTA  800

seq1  CAAACTCCTTTAGTTTTATA-TTTGATTTACTTTTA-TTTTGTATGTAAA  848
      |||||||||||||||||||| ||||||||  ||||| |||||||||||||
seq2  CAAACTCCTTTAGTTTTATATTTTGATTTCTTTTTATTTTTGTATGTAAA  850

seq1  AGTGTTTTGTCTGTC-TGTATGCATATATAACATGAATTGCTTATAGTTT  897
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGTCTGTCTTGTATGCATATATAACATGAATTGCTTATAGTTT  900

seq1  GTATATCAACACTGATGCTTTGTTAAGCATGAAGACATATTCATGTGCAT  947
      ||||||||| |||||||||||||||||||||||||| |||||||||||| 
seq2  GTATATCAA-ACTGATGCTTTGTTAAGCATGAAGACTTATTCATGTGCAG  949

seq1  GAAGACATAGTAAATCTGACTCACAGATGTTTTAATTCACTATGTCCCAT  997
      ||||||||| ||||||||| ||||||||||||| |||| |||||||||||
seq2  GAAGACATA-TAAATCTGA-TCACAGATGTTTTTATTCGCTATGTCCCAT  997

seq1  TCAATAAAATTATATCTAATTTAAAATTGAAATTATCATGGTACTTATAG  1047
      || ||| || ||||||| |||||||||   |||  ||||||||||||| |
seq2  TC-ATAGAAGTATATCT-ATTTAAAAT--GAATATTCATGGTACTTATGG  1043

seq1  TAATTATGGGAGACAGGAAGTACATT-GTGCTGT-GACAGTGT-GAACAT  1094
      |||||||||||||| || ||| |||| ||||||| |||||||| ||||||
seq2  TAATTATGGGAGACTGG-AGT-CATTGGTGCTGTGGACAGTGTGGAACAT  1091

seq1  ATTTTT  1100
      ||||||
seq2  ATTTTT  1097

seq1: chr6_117053557_117053737
seq2: B6Ng01-025I15.g_740_915

seq1  AGGCAGGGAGACTCCCATAGCTATTTCCTCAGTTGAAATA-CCTCGTCCA  49
      ||||||||| |   ||||||||||||||||||| |||||| || ||||||
seq2  AGGCAGGGAAAACTCCATAGCTATTTCCTCAGTAGAAATACCCCCGTCCA  50

seq1  -GGGAGGAGGCTCATGAGACTCAAGAAGTAGACGGATTTCATAAGTCTGG  98
       ||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GGGGAGGAGGCTCATGAGACTCAA-AAGTAAACGGATTTCATAAGTCTGG  99

seq1  GAGAGCTGAAAGATACAAGGGTCACAAGGCCCCTTCCCAAGGTTATAGAC  148
      || ||||| ||||||| |||||||| |||||||||||| || ||||| | 
seq2  GA-AGCTGTAAGATAC-AGGGTCAC-AGGCCCCTTCCC-AGTTTATA-AT  144

seq1  GAGTAAACAATAGCCAAAGGGGGAGACTTTGAC  181
      ||||||||||| |||||||||| ||||||||||
seq2  GAGTAAACAAT-GCCAAAGGGGAAGACTTTGAC  176