BAC Information

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BAC

Clone NameB6Ng01-026F06
Chromosome12 (Build37)
Map Location 39,537,068 - 39,692,693
singlet/doubletdoublet
Overlap geneEtv1, LOC100043145
Upstream geneLOC100043139, Dgkb, LOC668824, LOC100043142
Downstream geneLOC100043148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026F06.bB6Ng01-026F06.g
ACCDH857405DH857406
length1,024865
definitionDH857405|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F06, 5' end.DH857406|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,692,096 - 39,692,693)(39,537,068 - 39,537,932)
sequence
gaattcctcataccccatcatattaataacttgtactttaaaacatattt
tagttgtattttttctttcttgacagcttacttagctccaaagcaagaac
aaatcatcaagggcatggcttctactacaccattaaatttcattttcatc
aacaagatatatatttttaaaattatacttttaaaaaatgaaatactatt
atctaaatagaaaatggaaacctatacatcacttttatactgaacattta
gtttagcattttacatctacccaaatatatgtacgtatatacctattttt
aaagaatgtttggctccttgggccacaaccacaattagaagtaacccatt
cttggtactagatgattcattagatgaaaaagatgagcagtgggagccag
atatgtatatatgttaggaagcttttactatattgagttcccatggtagt
cctcaaatgacacttaactttagctgtctctccttatattcccttggttg
tccccctttcctctcatcatccacacttgataatcctgttccagttccca
ctcccaactcatccatccataattgtctattctatttcccttttctaggg
agagctctctgtccacccactattcccttactctaacctctctttgcttg
ctctgtaacctctggttctatggattgttgcttgatagacttaacagctt
gtatggacataagaatgagttcatttcatatttgcctttccaggtttgct
ttacctcacctaggataacttttctttctagttcctccatatacctgaga
atttcatgattttattttttaaggctgaataatactctgtataaatgccc
cctgttttctctatccgttcacctgttaaggaacatctagcttgattcca
atttctgcccattatgaatagagtagcaatgaacttgtgagcaatttctc
tgtagtagaggtatcctttggtcatattctcagagtgattagctagatct
tggattagttgattccagtctttc
gaattcttttgaaggtcagaaaattttataaggtacaataacagcagtga
ttatttagatagtagtgatatcaatacaacagtcgaaaagaacgcgagat
gattgtgtctaactgatgcagcaatcaaagactttgctttgtaatgtcat
tccagatctacatgtgaggagcatagcttccctaggttggtgtagttctc
attagagagctgttcccctcctcctgaaagggaacacgatgtaatcacaa
gttcactccaaagttatggaagaccctgcttgtttggtttgtgtggcaat
gttgtctgcacagggtgttccaagtgttctctttattatattcatggata
ccaattggataacaacaacaataatgacaacgacaatgtggtttcctcaa
gcactcactcagcatttttaagccagacttaaatcatcacgttttagaag
ttatttggttttacatgcatggttagaatccaaaattaaatggttgttca
cttatattagaaatagttcatatgtaaaatattgatatacaataaaatat
tacacacacatatatatgtatacacactcatatatatgtatatatataat
atctatggggagagagaaagagagagagaatctttgattcctgctttcag
aaggcattccgagaagcttgaaggaagcagggaagtacattgggaatatg
taaacaacaagaaggtaggatatgttcagtgattgatggaattctgccag
tcagctcagtgtgcctcagctttctttttctttggtgggtttgtgtgcat
atacatgtgtggggttccagggctcacagatgtgtgcatgtacatgtgtg
gggtgtgccaggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39692096_39692693
seq2: B6Ng01-026F06.b_47_644 (reverse)

seq1  CTAGAAAAGGGAAATAGAATAGACAATTATGGATGGATGAGTTGGGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGGGAAATAGAATAGACAATTATGGATGGATGAGTTGGGAGTG  50

seq1  GGAACTGGAACAGGATTATCAAGTGTGGATGATGAGAGGAAAGGGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAACAGGATTATCAAGTGTGGATGATGAGAGGAAAGGGGGACA  100

seq1  ACCAAGGGAATATAAGGAGAGACAGCTAAAGTTAAGTGTCATTTGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGAATATAAGGAGAGACAGCTAAAGTTAAGTGTCATTTGAGGAC  150

seq1  TACCATGGGAACTCAATATAGTAAAAGCTTCCTAACATATATACATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGGAACTCAATATAGTAAAAGCTTCCTAACATATATACATATCT  200

seq1  GGCTCCCACTGCTCATCTTTTTCATCTAATGAATCATCTAGTACCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCACTGCTCATCTTTTTCATCTAATGAATCATCTAGTACCAAGAA  250

seq1  TGGGTTACTTCTAATTGTGGTTGTGGCCCAAGGAGCCAAACATTCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTACTTCTAATTGTGGTTGTGGCCCAAGGAGCCAAACATTCTTTAA  300

seq1  AAATAGGTATATACGTACATATATTTGGGTAGATGTAAAATGCTAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTATATACGTACATATATTTGGGTAGATGTAAAATGCTAAACTA  350

seq1  AATGTTCAGTATAAAAGTGATGTATAGGTTTCCATTTTCTATTTAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAGTATAAAAGTGATGTATAGGTTTCCATTTTCTATTTAGATAA  400

seq1  TAGTATTTCATTTTTTAAAAGTATAATTTTAAAAATATATATCTTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTCATTTTTTAAAAGTATAATTTTAAAAATATATATCTTGTTGA  450

seq1  TGAAAATGAAATTTAATGGTGTAGTAGAAGCCATGCCCTTGATGATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAAATTTAATGGTGTAGTAGAAGCCATGCCCTTGATGATTTGT  500

seq1  TCTTGCTTTGGAGCTAAGTAAGCTGTCAAGAAAGAAAAAATACAACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTGGAGCTAAGTAAGCTGTCAAGAAAGAAAAAATACAACTAAA  550

seq1  ATATGTTTTAAAGTACAAGTTATTAATATGATGGGGTATGAGGAATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTAAAGTACAAGTTATTAATATGATGGGGTATGAGGAATTC  598

seq1: chr12_39537068_39537932
seq2: B6Ng01-026F06.g_70_934

seq1  GAATTCTTTTGAAGGTCAGAAAATTTTATAAGGTACAATAACAGCAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAAGGTCAGAAAATTTTATAAGGTACAATAACAGCAGTGA  50

seq1  TTATTTAGATAGTAGTGATATCAATACAACAGTCGAAAAGAACGCGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGATAGTAGTGATATCAATACAACAGTCGAAAAGAACGCGAGAT  100

seq1  GATTGTGTCTAACTGATGCAGCAATCAAAGACTTTGCTTTGTAATGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTCTAACTGATGCAGCAATCAAAGACTTTGCTTTGTAATGTCAT  150

seq1  TCCAGATCTACATGTGAGGAGCATAGCTTCCCTAGGTTGGTGTAGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCTACATGTGAGGAGCATAGCTTCCCTAGGTTGGTGTAGTTCTC  200

seq1  ATTAGAGAGCTGTTCCCCTCCTCCTGAAAGGGAACACGATGTAATCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAGCTGTTCCCCTCCTCCTGAAAGGGAACACGATGTAATCACAA  250

seq1  GTTCACTCCAAAGTTATGGAAGACCCTGCTTGTTTGGTTTGTGTGGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTCCAAAGTTATGGAAGACCCTGCTTGTTTGGTTTGTGTGGCAAT  300

seq1  GTTGTCTGCACAGGGTGTTCCAAGTGTTCTCTTTATTATATTCATGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGCACAGGGTGTTCCAAGTGTTCTCTTTATTATATTCATGGATA  350

seq1  CCAATTGGATAACAACAACAATAATGACAACGACAATGTGGTTTCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGGATAACAACAACAATAATGACAACGACAATGTGGTTTCCTCAA  400

seq1  GCACTCACTCAGCATTTTTAAGCCAGACTTAAATCATCACGTTTTAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACTCAGCATTTTTAAGCCAGACTTAAATCATCACGTTTTAGAAG  450

seq1  TTATTTGGTTTTACATGCATGGTTAGAATCCAAAATTAAATGGTTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTTTTACATGCATGGTTAGAATCCAAAATTAAATGGTTGTTCA  500

seq1  CTTATATTAGAAATAGTTCATATGTAAAATATTGATATACAATAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTAGAAATAGTTCATATGTAAAATATTGATATACAATAAAATAT  550

seq1  TACACACACATATATATGTATACACACTCATATATATGTATATATATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACATATATATGTATACACACTCATATATATGTATATATATAAT  600

seq1  ATCTATGGGGAGAGAGAAAGAGAGAGAGAATC-TTGATTCCTGCTTTCAG  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCTATGGGGAGAGAGAAAGAGAGAGAGAATCTTTGATTCCTGCTTTCAG  650

seq1  AAGGCATTCCGAGAAGCTTGAAGGAAGCAGGGAAGTACATTGGGAATATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTCCGAGAAGCTTGAAGGAAGCAGGGAAGTACATTGGGAATATG  700

seq1  TAAACAACAAGAAGGTAGGATATGTTCAGTGATTGATGGAATTCTGCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACAAGAAGGTAGGATATGTTCAGTGATTGATGGAATTCTGCCAG  750

seq1  TCAGGCTCAGTGTGCCTCAGCTTTCTTTTTCTTTGGTGGGTTTGTGTGCA  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GCTCAGTGTGCCTCAGCTTTCTTTTTCTTTGGTGGGTTTGTGTGCA  799

seq1  TATACATGTGTGGGTGTGCCAGGGCTCACAGATGTGTGCATGTACATGTG  849
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  TATACATGTGTGGG-GTTCCAGGGCTCACAGATGTGTGCATGTACATGTG  848

seq1  T-GGGTGTGCCAGGCCT  865
      | |||||||||||||||
seq2  TGGGGTGTGCCAGGCCT  865