BAC Information

Click to search

BAC

Clone NameB6Ng01-026F23
Chromosome12 (Build37)
Map Location 40,875,144 - 41,024,220
singlet/doubletdoublet
Overlap geneGm889, Ifrd1, EG629820
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin
Downstream geneZfp277, Dock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026F23.bB6Ng01-026F23.g
ACCDH857437DH857438
length1,0731,023
definitionDH857437|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F23, 5' end.DH857438|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,023,142 - 41,024,220)(40,875,144 - 40,876,173)
sequence
gaattccttgctgggcatggtggcacacgcctttgatcccagcactcggg
aggcagagacaggcagatttctgagttcgaggccagcctggtctacaaag
tgagttccaggacagccagggctacagagaaaccctgtctcaaacaaaaa
caaaaacaaaaacaaaaaacaaacaaacaaacatgcaaaagttctagaat
gtctgtttgcacaggctctgttccatatcattctgccagtgtgaagttct
gtttggcaccctgtgaaatgttcatctggccaataaccaaatagcaaaag
aacaatcctttaaaagaaaatgttagacacctcacaatgaactgatttca
aagcacatcacatagctacaaccaccacagccatgcagtgctggcaccca
tggaacagaacagagagccagaaataacagctcacagcctgcagacagca
cttcccgaatgccactcttatgaccatctttttcatctctaatatctcta
attataataaaccaagttttctttctacccaattctataaacattgtatt
atatgttgatcagatttagttcaggttcatttctttgcttcataaagccc
gagtttgtcaagagtgttgactgggtattcaaagaaatgtaatttaagga
ggttttaagtgaagaaaaacaggctccagagtggtttggcataaggacct
cagaacctattctaccttgcaaggatttaaatagaaatgaggggggcagt
ctagggcacatagcaagactctgtcaaagaaaggaagctggaatggaaag
aggagtggaagggagaagtgaaaggaaggaaaacagagaagccaaaaaga
gagagggaaggagggatggggaggaacaaggagataggaaatgaaatgat
gtactcttaaccactttgggagtagcaacagaaaatagtgatcagcaagt
ccatggacaagaaagcttgtggagtcccacctgtggtgcctccacctatc
tttataacttcatgcagcagcttcagaggggtggtggccctgttgagttt
gtcctggggatgctaaccacatt
gaattccttgatagaatctatgtctgcaaagactgagttgaactgcagtg
atgtggagaggttggaatgctgcaggttcacaggctaattttttttatct
tgggccagcattagtagccaactgtggatccgttcagatatcagctggtt
ctctcccataaaatttgtgccactattgtacaattggcgcatcttccctc
acccgttgtaatgtagcatgcaagatgcccagcttgggaaggcggttgct
gatttttctcccccagttgcctatgcagaaccttggagcactgtggcacg
tctcagccatctagcagatagaaagctgggagttcaggtctattctggtt
tgtttatgttctccaactgaaatgtgtgttttcttcataatggagtctta
ccatctaattctgaagtctgaatattttaattttatatgcaaatgtttta
gtactgtattcaaccacaaaagacaatactttgtagacatgaagaaacag
caattcgtttttaactgtttttaaagaaaaagaattcttcaacttaaaag
tcactctctacatcacaatctgtagatatgtatcacaaatggtcatgtat
gcccagcgcctgcttagagaggtaggtttcagcaatggaaagactctctg
aagcctgtttcttacctttgcctgctctgaatgctctcagtagagtgagg
ggttcagaaactaaacttagcaataaaaatgagttctacccagaattcat
ctccaagcagtttacttatacagctctgtgtccactgaaaattaataact
tctcacacaccctttctataagatgatggatatatgtattacaaatatga
taataatacatatatagtttcatcatatataatgtgtgtataaaatatct
aaatatttataagttatacataataaatattataatgttacagaaggcac
tcactaagaattatgtattcttactctggataatgtcatacttaattgta
acaaaagcaatgaatatgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41023142_41024220
seq2: B6Ng01-026F23.b_50_1122 (reverse)

seq1  AATGTGGTTAGCATCCACAAGGACAAACTCCAACAGGGCCACCA-CCCTC  49
      |||||||||||||||| | |||||||||| |||||||||||||| |||||
seq2  AATGTGGTTAGCATCC-CCAGGACAAACT-CAACAGGGCCACCACCCCTC  48

seq1  TGAAGCTGCTGCATGAAGTTACTAAGAGTAGGTGGAGGCACCCACAGTTG  99
      |||||||||||||||||||||  |||| |||||||||||| |||||| ||
seq2  TGAAGCTGCTGCATGAAGTTATAAAGA-TAGGTGGAGGCA-CCACAGGTG  96

seq1  GG-CTCCACAAGCTTTCTTTGTCCATGGACTTGCTGATCACTATTTTCTG  148
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGACTCCACAAGCTTTC-TTGTCCATGGACTTGCTGATCACTATTTTCTG  145

seq1  TTGCTAACTCCCAAAGGTGGGTTAAGGGTACATCCTTTCATTTCCTATCT  198
      ||||| ||||||||||   ||||||| ||||||| |||||||||||||||
seq2  TTGCT-ACTCCCAAAG--TGGTTAAGAGTACATCATTTCATTTCCTATCT  192

seq1  CCTTGTTCCTCCCCATCCCTCCTTCCCTCTCTCTTTTTGGCTTCTCTGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCCTCCCCATCCCTCCTTCCCTCTCTCTTTTTGGCTTCTCTGTT  242

seq1  TTCCTTCCTTTCACTTCTCCCTTCCACTCCTCTTTCCATTCCAGCTTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTTCACTTCTCCCTTCCACTCCTCTTTCCATTCCAGCTTCCT  292

seq1  TTCTTTGACAGAGTCTTGCTATGTGCCCTAGACTGCCCCCCTCATTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGACAGAGTCTTGCTATGTGCCCTAGACTGCCCCCCTCATTTCTA  342

seq1  TTTAAATCCTTGCAAGGTAGAATAGGTTCTGAGGTCCTTATGCCAAACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCTTGCAAGGTAGAATAGGTTCTGAGGTCCTTATGCCAAACCA  392

seq1  CTCTGGAGCCTGTTTTTCTTCACTTAAAACCTCCTTAAATTACATTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGCCTGTTTTTCTTCACTTAAAACCTCCTTAAATTACATTTCTT  442

seq1  TGAATACCCAGTCAACACTCTTGACAAACTCGGGCTTTATGAAGCAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACCCAGTCAACACTCTTGACAAACTCGGGCTTTATGAAGCAAAGA  492

seq1  AATGAACCTGAACTAAATCTGATCAACATATAATACAATGTTTATAGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCTGAACTAAATCTGATCAACATATAATACAATGTTTATAGAAT  542

seq1  TGGGTAGAAAGAAAACTTGGTTTATTATAATTAGAGATATTAGAGATGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAAAGAAAACTTGGTTTATTATAATTAGAGATATTAGAGATGAA  592

seq1  AAAGATGGTCATAAGAGTGGCATTCGGGAAGTGCTGTCTGCAGGCTGTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGTCATAAGAGTGGCATTCGGGAAGTGCTGTCTGCAGGCTGTGA  642

seq1  GCTGTTATTTCTGGCTCTCTGTTCTGTTCCATGGGTGCCAGCACTGCATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTATTTCTGGCTCTCTGTTCTGTTCCATGGGTGCCAGCACTGCATG  692

seq1  GCTGTGGTGGTTGTAGCTATGTGATGTGCTTTGAAATCAGTTCATTGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTGGTTGTAGCTATGTGATGTGCTTTGAAATCAGTTCATTGTGA  742

seq1  GGTGTCTAACATTTTCTTTTAAAGGATTGTTCTTTTGCTATTTGGTTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTAACATTTTCTTTTAAAGGATTGTTCTTTTGCTATTTGGTTATT  792

seq1  GGCCAGATGAACATTTCACAGGGTGCCAAACAGAACTTCACACTGGCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATGAACATTTCACAGGGTGCCAAACAGAACTTCACACTGGCAGA  842

seq1  ATGATATGGAACAGAGCCTGTGCAAACAGACATTCTAGAACTTTTGCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGGAACAGAGCCTGTGCAAACAGACATTCTAGAACTTTTGCATG  892

seq1  TTTGTTTGTTTGTTTTTTGTTTTTGTTTTTGTTTTTGTTTGAGACAGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTTTGTTTTTGTTTTTGTTTTTGTTTGAGACAGGGT  942

seq1  TTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  992

seq1  CTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCGAGTGCTGGGATCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCGAGTGCTGGGATCAAA  1042

seq1  GGCGTGTGCCACCATGCCCAGCAAGGAATTC  1079
      |||||||||||||||||||||||||||||||
seq2  GGCGTGTGCCACCATGCCCAGCAAGGAATTC  1073

seq1: chr12_40875144_40876173
seq2: B6Ng01-026F23.g_65_1087

seq1  GAATTCCTTGATAGAATCTATGTCTGCAAAGACTGAGTTGAACTGCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATAGAATCTATGTCTGCAAAGACTGAGTTGAACTGCAGTG  50

seq1  ATGTGGAGAGGTTGGAATGCTGCAGGTTCACAGGCTAATTTTTTTTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGAGGTTGGAATGCTGCAGGTTCACAGGCTAATTTTTTTTATCT  100

seq1  TGGGCCAGCATTAGTAGCCAACTGTGGATCCGTTCAGATATCAGCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGCATTAGTAGCCAACTGTGGATCCGTTCAGATATCAGCTGGTT  150

seq1  CTCTCCCATAAAATTTGTGCCACTATTGTACAATTGGCGCATCTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCATAAAATTTGTGCCACTATTGTACAATTGGCGCATCTTCCCTC  200

seq1  ACCCGTTGTAATGTAGCATGCAAGATGCCCAGCTTGGGAAGGCGGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTTGTAATGTAGCATGCAAGATGCCCAGCTTGGGAAGGCGGTTGCT  250

seq1  GATTTTTCTCCCCCAGTTGCCTATGCAGAACCTTGGAGCACTGTGGCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTCCCCCAGTTGCCTATGCAGAACCTTGGAGCACTGTGGCACG  300

seq1  TCTCAGCCATCTAGCAGATAGAAAGCTGGGAGTTCAGGTCTATTCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCATCTAGCAGATAGAAAGCTGGGAGTTCAGGTCTATTCTGGTT  350

seq1  TGTTTATGTTCTCCAACTGAAATGTGTGTTTTCTTCATAATGGAGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTTCTCCAACTGAAATGTGTGTTTTCTTCATAATGGAGTCTTA  400

seq1  CCATCTAATTCTGAAGTCTGAATATTTTAATTTTATATGCAAATGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAATTCTGAAGTCTGAATATTTTAATTTTATATGCAAATGTTTTA  450

seq1  GTACTGTATTCAACCACAAAAGACAATACTTTGTAGACATGAAGAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTATTCAACCACAAAAGACAATACTTTGTAGACATGAAGAAACAG  500

seq1  CAATTCGTTTTTAACTGTTTTTAAAGAAAAAGAATTCTTCAACTTAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCGTTTTTAACTGTTTTTAAAGAAAAAGAATTCTTCAACTTAAAAG  550

seq1  TCACTCTCTACATCACAATCTGTAGATATGTATCACAAATGGTCATGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTCTACATCACAATCTGTAGATATGTATCACAAATGGTCATGTAT  600

seq1  GCCCAGCGCCTGCTTAGAGAGGTAGGTTTCAGCAATGGAAAGACTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCGCCTGCTTAGAGAGGTAGGTTTCAGCAATGGAAAGACTCTCTG  650

seq1  AAGCCTGTTTCTTACCTTTGCCTGCTCTGAATGCTCTCAGTAGAGTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTTTCTTACCTTTGCCTGCTCTGAATGCTCTCAGTAGAGTGAGG  700

seq1  GGTTCAGAAACTAAACTTAGCAATAAAAATGAGTTCTACCCAGAATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGAAACTAAACTTAGCAATAAAAATGAGTTCTACCCAGAATTCAT  750

seq1  CTCCAAGCAGTTTACTTATACAGCTCTGTGTCCACTGAAAATTAATAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCAGTTTACTTATACAGCTCTGTGTCCACTGAAAATTAATAACT  800

seq1  TTCTTCACACACCC-TTCTATAAGATGATGGATATATGTATTACAAATAT  849
      |   |||||||||| |||||||||||||||||||||||||||||||||||
seq2  T--CTCACACACCCTTTCTATAAGATGATGGATATATGTATTACAAATAT  848

seq1  GATAATAATACATATATAGTTTCATCATATATAATGTGTGTATAAAATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAATACATATATAGTTTCATCATATATAATGTGTGTATAAAATAT  898

seq1  CTAAATATTTATAAGTTATACATAATAAATATTTATAATGTTTACAGAAG  949
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  CTAAATATTTATAAGTTATACATAATAAATA-TTATAATG-TTACAGAAG  946

seq1  GCACTCACTAAGAATTATGTATTCTTACTCTGGGATAATGTTCATACTTA  999
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  GCACTCACTAAGAATTATGTATTCTTACTCT-GGATAATG-TCATACTTA  994

seq1  ATTGTAACAAATAGCAATGAATATGTATGTT  1030
      ||||||||||| |||||||||||||| ||||
seq2  ATTGTAACAAA-AGCAATGAATATGT-TGTT  1023