BAC Information

Click to search

BAC

Clone NameB6Ng01-026M07
Chromosome11 (Build37)12 (Build37)
Map Location 107,228,379 - 107,229,5725,179,541 - 5,179,795
singlet/doubletsingletsinglet
Overlap genePitpnc1
Upstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream genePsmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026M07.bB6Ng01-026M07.g
ACCDH857706DH857707
length1,109919
definitionDH857706|Mus musculus domesticus DNA, BAC clone: B6Ng01-026M07, 5' end.DH857707|Mus musculus domesticus DNA, BAC clone: B6Ng01-026M07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,228,379 - 107,229,572)(5,179,541 - 5,179,795)
sequence
gaattcatcctaataactccaataggtgggtacaattaggatcctggtca
caatacagaagaagaaactgaggcaaaaacaaagaggacccaagggaagg
agctttccagcagggcaggccagacgtgctcttctggattcctaagctgt
ggtgacattcattcataccactgcacagcaaaggacccaaacagaaggga
gagcctgaataatgtctggaccaagacactgcaagggaaggagagaccat
gggcggcgtgcgtcacgtggccacagctcgagatgggttactttcttcca
tgtgaaaaagaaggaattccaggaaaagagaaaaggccattattgtgagt
ttgaggccagcctggtctacatagcgaggcacgtcaaagaaggcaagtaa
gcaagcaagaaagaaaggagagaggaaggagaagattatctaaaatatta
tctaagataacaaaaggagcaaagagaagagctcagaatacttgtttaga
attcttagctttgggacataagagatggctcagactactgtatgaaagca
cacaccactactctgcagaaagtctgagtcccattcctggcacccacgcc
cagtggctcacaacttgcgcttccagtgcttggggatccaacatctctgg
cctccacggacacatatacataattaaaaatcaaaaccaaaaacaactga
cttttaggacaactgaagggtatgagacaagcaaattcaatctgtagctt
tcttactgattagtgggaagccaatgggaagacatccattgggaaacagt
atatgatccggtaatgttgattaagaggctcgccgatgggggacacacag
acatggctgccagcggcaggagggaggcacagtcacctggtcagaccagg
ctctgttttgtttcatgtttttcttacagagaccgtgtagcattttgctg
gaaatttaaaaaaaaattccttattagttctcctgcctcaaattaaatgt
acatgtaaaatacatactcgaaggctggatagatggctcactgttgagaa
cacttgttactgttcattgacttggatctacacctccaagggcctcatat
acacctgta
gaattccaggatagccaggactacacagagaaaccctgtctggggaaaaa
aaaagacgagaagacccaggttccatttgcagcatctacaggacagctct
caaaccacctgcaactccagtcccagaagagctgatgccttttctggttt
ccaccagcaccaggtacacccagggtgcacaaatatacagggtgctggca
aaacactgacagaaataaaaaaaaacaacagtaaggtgggactatcaaga
tgactcactgggtaagggccctggagccagagttgacaagttaagttcta
tccctgggggaagaagagaaccaattccattaacttgctccctgacctct
aggatgcacggaattgcacggccctaccccataaaaaaagcaaataaatg
tttaaaacagaaaaggtagaaactgattgaagaagacactgggcaatgac
acctggcttctggcctacacacacacacacatctgtagacacacacacac
acatctgtagacagacaagcagaccatacacacagattaccctaatttaa
ctggcattacaacccaagtttgttgagcacctcaatatccattctcttcc
tgtttttcagccagaattcaggccacaggtgtggagtaggaagtaaaatg
ccctagaacagagagttgttacaaaaggtagtgtgggggcagggaggggt
gcgagtgagtggcaggagtgctcatctggcttgctcaaagcctggcttcc
agtcccccctcataaaagcaggtgtaactaggtgaggtggcccatgctta
ggacacctgcactgaaactggagcagaggatgagtttacttacagaagcc
atgtgtgaggctgctaggttacataaagcttatctaaaaaaaaaaaaaaa
aggatggacgaaggatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107228379_107229572
seq2: B6Ng01-026M07.b_44_1152

seq1  GAATTCATCCTAATAACTCCAATAGGTGGGTACAATTAGGATCCTGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTAATAACTCCAATAGGTGGGTACAATTAGGATCCTGGTCA  50

seq1  CAATACAGAAGAAGAAACTGAGGCAAAAACAAAGAGGACCCAAGGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGAAGAAGAAACTGAGGCAAAAACAAAGAGGACCCAAGGGAAGG  100

seq1  AGCTTTCCAGCAGGGCAGGCCAGACGTGCTCTTCTGGATTCCTAAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCAGCAGGGCAGGCCAGACGTGCTCTTCTGGATTCCTAAGCTGT  150

seq1  GGTGACATTCATTCATACCACTGCACAGCAAAGGACCCAAACAGAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTCATTCATACCACTGCACAGCAAAGGACCCAAACAGAAGGGA  200

seq1  GAGCCTGAATAATGTCTGGACCAAGACACTGCAAGGGAAGGAGAGACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAATAATGTCTGGACCAAGACACTGCAAGGGAAGGAGAGACCAT  250

seq1  GGGCGGCGTGCGTCACGTGGCCACAGCTCGAGATGGGTTACTTTCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCGTGCGTCACGTGGCCACAGCTCGAGATGGGTTACTTTCTTCCA  300

seq1  TGTGAAAAAGAAGGAATTCCAGGAAAAGAGAAAAGGCCATTATTGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAAGAAGGAATTCCAGGAAAAGAGAAAAGGCCATTATTGTGAGT  350

seq1  TTGAGGCCAGCCTGGTCTACATAGCGAGGCACGTCAAAGAAGGCAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCCTGGTCTACATAGCGAGGCACGTCAAAGAAGGCAAGTAA  400

seq1  GCAAGCAAGAAAGAAAGGAGAGAGGAAGGAGAAGATTATCTAAAATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGAAAGAAAGGAGAGAGGAAGGAGAAGATTATCTAAAATATTA  450

seq1  TCTAAGATAACAAAAGGAGCAAAGAGAAGAGCTCAGAATACTTGTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATAACAAAAGGAGCAAAGAGAAGAGCTCAGAATACTTGTTTAGA  500

seq1  ATTCTTAGCTTTGGGACATAAGAGATGGCTCAGACTACTGTATGAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGCTTTGGGACATAAGAGATGGCTCAGACTACTGTATGAAAGCA  550

seq1  CACACCACTACTCTGCAGAAAGTCTGAGTCCCATTCCTGGCACCCACGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACTACTCTGCAGAAAGTCTGAGTCCCATTCCTGGCACCCACGCC  600

seq1  CAGTGGCTCACAACTTGCGCTTCCAGTGCTTGGGGATCCAACATCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTCACAACTTGCGCTTCCAGTGCTTGGGGATCCAACATCTCTGG  650

seq1  CCTCCACGGACACATATACATAATTAAAAATCAAAACCAAAAACAACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACGGACACATATACATAATTAAAAATCAAAACCAAAAACAACTGA  700

seq1  CTTTTAGGACAACTGAAGGGTATGAGACAAGCAAATTCAATCTGTAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGACAACTGAAGGGTATGAGACAAGCAAATTCAATCTGTAGCTT  750

seq1  TCTTACTGATTAGTGGGAAGCCAATGGGAAGACATCCATTGGGAAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGATTAGTGGGAAGCCAATGGGAAGACATCCATTGGGAAACAGT  800

seq1  ATATGATCCGGTAATGTTGATTAAGAGGCTCGCCGATGGGGGACACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATCCGGTAATGTTGATTAAGAGGCTCGCCGATGGGGGACACACAG  850

seq1  ACATGGCTGCCAGCGGCAGGAGGGAGGCACAGTCACCTGGTCAGACCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTGCCAGCGGCAGGAGGGAGGCACAGTCACCTGGTCAGACCAGG  900

seq1  CTCTGTTTTGTTTCATGTTTTTCTTACAGAGACCGTGTAGCATTTTGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTGTTTCATGTTTTTCTTACAGAGACCGTGTAGCATTTTGCTG  950

seq1  GAAATTTAAAAAAAAAAATCCTTATTAGTTCTCCTGCCTCAAATTTAAAA  1000
      ||||||| ||||||||| |||||||||||||||||||||||||||  |||
seq2  GAAATTT-AAAAAAAAATTCCTTATTAGTTCTCCTGCCTCAAATT--AAA  997

seq1  TGTACATGTAAAATACATAACTCGAAGGCTGGATAGATGGCTCAGTGGTT  1050
      |||||||||||||||||| ||||||||||||||||||||||||| | |||
seq2  TGTACATGTAAAATACAT-ACTCGAAGGCTGGATAGATGGCTCACT-GTT  1045

seq1  GAGAGCACTTGTTACTGTTCAGTGAACCTTGGATTCATAACACCTCCAAG  1100
      |||| |||||||||||||||| |||  |||||||     |||||||||||
seq2  GAGAACACTTGTTACTGTTCATTGA--CTTGGAT---CTACACCTCCAAG  1090

seq1  GCCCTCATAACCACCTGTAACTCCAGCCCCAGAGAATCCAATGTTCTTTG  1150
      | |||||||  ||||||||                               
seq2  GGCCTCATATACACCTGTA-------------------------------  1109

seq1  CTGGCCTCTAAGGGCACTGCATACTGCAGGCAAAAACACCTGTA  1194
                                                  
seq2  --------------------------------------------  1109

seq1: chr12_5179541_5179795
seq2: B6Ng01-026M07.g_75_558 (reverse)

seq1  TACAGATGTGTGTGTGTGTG------------CATGTG----TGCACA-T  33
      ||||||||||||||||||||            || |||    ||| || |
seq2  TACAGATGTGTGTGTGTGTGTAGGCCAGAAGCCAGGTGTCATTGCCCAGT  50

seq1  G---TACACACACAG--------------GAATGAGACA------GAGTG  60
      |   |   ||  |||              |  | | |||         | 
seq2  GTCTTCTTCAATCAGTTTCTACCTTTTCTGTTTTAAACATTTATTTGCTT  100

seq1  TGTAGATAGGAT---GACATTCAATTTC--------------------AG  87
      | |  || || |   | | | ||||| |                    ||
seq2  TTTTTATGGGGTAGGGCCGTGCAATTCCGTGCATCCTAGAGGTCAGGGAG  150

seq1  ATATTTAAT----------------------------TAAAAATGACCTT  109
        | |||||                            || || | | |||
seq2  CAAGTTAATGGAATTGGTTCTCTTCTTCCCCCAGGGATAGAACTTAACTT  200

seq1  -TCCACT-TGGC----CGGGACTGAAGCACTGAG---------------C  138
       || ||| ||||     ||  || |  || ||||               |
seq2  GTCAACTCTGGCTCCAGGGCCCTTACCCAGTGAGTCATCTTGATAGTCCC  250

seq1  AGATTA-TGTGTGTATTCTCTTGGACTTCT----------------CA--  169
      |  ||| ||| ||| || | ||  | ||||                ||  
seq2  ACCTTACTGT-TGTTTTTTTTT--ATTTCTGTCAGTGTTTTGCCAGCACC  297

seq1  ---------TGTACACTC--------------------------------  178
               ||| ||| |                                
seq2  CTGTATATTTGTGCACCCTGGGTGTACCTGGTGCTGGTGGAAACCAGAAA  347

seq1  ---CATC-----------------------------------------CC  184
         ||||                                         ||
seq2  AGGCATCAGCTCTTCTGGGACTGGAGTTGCAGGTGGTTTGAGAGCTGTCC  397

seq1  TG-------------TGGCACC----TCTTTTTTTTTTTTTTTTCCCCCG  217
      ||             ||| |||    |||| |  | |||||||| |||| 
seq2  TGTAGATGCTGCAAATGGAACCTGGGTCTTCTCGTCTTTTTTTTTCCCC-  446

seq1  AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  255
      ||||||||||||||||||||| ||||||| ||||||||
seq2  AGACAGGGTTTCTCTGTGTAGTCCTGGCTATCCTGGAA  484