BAC Information

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BAC

Clone NameB6Ng01-027P06
Chromosome12 (Build37)
Map Location 90,641,380 - 90,781,779
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneAdck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027P06.bB6Ng01-027P06.g
ACCDH858560DH858561
length1,0431,032
definitionDH858560|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P06, 5' end.DH858561|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,641,380 - 90,642,452)(90,780,697 - 90,781,779)
sequence
gaattcacttatactaaaggcatgaaaaagcatatatgttattactaact
gacaccagcctcaagcattcagaatacccataaaagtactcttacacata
aaatacttgtgaagtaattacccaaagtttttgctggctgatctatgaat
ttaacatacattttgagtgattgggaactcaagatgttatgtattctcta
aactattttttaaaccagtcaatggcaaggaatccctgtttactttacag
tatcttgccaacagtcctgatatgctctttctgttttgccagatgtggag
ttcagtataagaaaaagattgaaaatatgtctgaaggtatctaaggcctt
ctaatacgtattcagccctatagaaagtcttatgaatataaaataatatc
tctaaggctgaagttcactcagttctccttgtgtttcctggttttctttt
tcatctgggtagctccatatattatatgataaaaaaaatattttcctgtt
ccatgttaagtatgagactatttagtcgatgtttatagactaaacatcta
gaattatgatgccaggagttaattgcctttacttctcccaaaagaggagg
ttaagatacttgctgtatttgccaaaccttttctcactttttaagacttc
tgaatatgtagatttttcttgagggtttttttttccctaaacatttacat
tgggaaataagcataattaaggcaagcaaaaaaaaaaaaaaaaatctggg
aaatctgcataaagcagtacagataggtttttttttttttttttttgttt
aatgctgaggcttgcaatccatgggaaagtatggagactttttaaagaat
cagattgctagaagccattctgccccaaattctgtaattacttaaggaag
tccaaggtctgtgcatataaaagtgtattaacatgtatgttttataccaa
ttataccccaactggtactgtgatgtcaacttatcaggatgtgattgtac
tagatctagttgagcggagggactctagctgattcaggggaag
gaattctctgtttgaaaacattttataatctcatttggcaaagtgacatt
gaccaggtggcaaaaaccctcaagataaacatagagaagaaaacgagcca
taacttaattaaaacaaagaataaaagtggccagttgctgaatgaagcca
aatccatccttgcacccacagagcttaatcaaatatttttggaggactgg
aaggaaaaagctatagggacctcagaacagaaactcagatggagaaactc
tggatggagacacatttgcagggatttaactggctttgtgcagcttctta
gagcattttctttagctgcagagggttctttgatatcagaatgcctataa
ctggaaatggagtgttttccaatagaaaaatcaattgggtctcaggtcat
gtcacaccacccactggtgctgatgggaagcttggaattattctgaggtt
ttgtggcttaaagcacagcatattgcaggttatattcccctccccacctt
ctactttttcccaccttacaaagatgaagtaaggcagaatgggggagggg
ggcttagcatctacttgcaactaaatgaaacaacagcttggatcccaaaa
attgattcagtggaaccaggaaaaagacaacagaaaaaataatgtgttgt
gagcctcctgacatcagactaaacctgtttgccagaaagacaagagagga
agaaactgagctgtaaggttgctcccagcttagttcctaagaaatttctg
tgcagtaaagcagagatggggtcctcagatggaatccagctgcttcctat
agatgagatgtggctaacagttaggagagactctgaaggatcacacagaa
ctaaaggaaacacaccaagatcacagactacaaatttcaattacatcttc
tcaaaatagtggaaatgtatgctgatactaattcaaagctgaagctggaa
gcagatgagactatctaactgtagagtacagggaaatctctgaaaagata
gacatcacaaatactgtggtggttggtccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90641380_90642452
seq2: B6Ng01-027P06.b_43_1085

seq1  GAATTCACTTATACTAAAGGCATGAAAAAGCATATATGTTATTACTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATACTAAAGGCATGAAAAAGCATATATGTTATTACTAACT  50

seq1  GACACCAGCCTCAAGCATTCAGAATACCCATAAAAGTACTCTTACACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGCCTCAAGCATTCAGAATACCCATAAAAGTACTCTTACACATA  100

seq1  AAATACTTGTGAAGTAATTACCCAAAGTTTTTGCTGGCTGATCTATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTGTGAAGTAATTACCCAAAGTTTTTGCTGGCTGATCTATGAAT  150

seq1  TTAACATACATTTTGAGTGATTGGGAACTCAAGATGTTATGTATTCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATACATTTTGAGTGATTGGGAACTCAAGATGTTATGTATTCTCTA  200

seq1  AACTATTTTTTAAACCAGTCAATGGCAAGGAATCCCTGTTTACTTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTTAAACCAGTCAATGGCAAGGAATCCCTGTTTACTTTACAG  250

seq1  TATCTTGCCAACAGTCCTGATATGCTCTTTCTGTTTTGCCAGATGTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCCAACAGTCCTGATATGCTCTTTCTGTTTTGCCAGATGTGGAG  300

seq1  TTCAGTATAAGAAAAAGATTGAAAATATGTCTGAAGGTATCTAAGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATAAGAAAAAGATTGAAAATATGTCTGAAGGTATCTAAGGCCTT  350

seq1  CTAATACGTATTCAGCCCTATAGAAAGTCTTATGAATATAAAATAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACGTATTCAGCCCTATAGAAAGTCTTATGAATATAAAATAATATC  400

seq1  TCTAAGGCTGAAGTTCACTCAGTTCTCCTTGTGTTTCCTGGTTTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCTGAAGTTCACTCAGTTCTCCTTGTGTTTCCTGGTTTTCTTTT  450

seq1  TCATCTGGGTAGCTCCATATATTATATGATAAAAAAAATATTTTCCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGGTAGCTCCATATATTATATGATAAAAAAAATATTTTCCTGTT  500

seq1  CCATGTTAAGTATGAGACTATTTAGTCGATGTTTATAGACTAAACATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAAGTATGAGACTATTTAGTCGATGTTTATAGACTAAACATCTA  550

seq1  GAATTATGATGCCAGGAGTTAATTGCCTTTACTTCTCCCAAAAGAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGATGCCAGGAGTTAATTGCCTTTACTTCTCCCAAAAGAGGAGG  600

seq1  TTAAGATACTTGCTGTATTTGCCAAACCTTTTCTCACTTTTTAAGACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATACTTGCTGTATTTGCCAAACCTTTTCTCACTTTTTAAGACTTC  650

seq1  TGAATATGTAGATTTTTCTTGAGGGTTTTTTTTTCCCTAAACATTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGTAGATTTTTCTTGAGGGTTTTTTTTTCCCTAAACATTTACAT  700

seq1  TGGGAAATAAGCATAATTAAGGCAAGCAAAAAAAAAAAAAAAAATCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATAAGCATAATTAAGGCAAGCAAAAAAAAAAAAAAAAATCTGGG  750

seq1  AAATCTGCATAAAGCAGTACAGATAGGTTTTTTTTTTTTTTTTTTTTTTT  800
      |||||||||||||||||||||||||||  ||||||||||||||||||| |
seq2  AAATCTGCATAAAGCAGTACAGATAGG--TTTTTTTTTTTTTTTTTTTGT  798

seq1  TTAATGCTGAGGCTTGCAATCCATGGGAAAGTATGGAGACTGTTTAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAATGCTGAGGCTTGCAATCCATGGGAAAGTATGGAGACTTTTTAAAGA  848

seq1  ATCAGATTGCTAGAAGCCATTCTGCCCCAAATTCTGTAATTACTTTAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCAGATTGCTAGAAGCCATTCTGCCCCAAATTCTGTAATTAC-TTAAGG  897

seq1  AAGTCCAAGGTCTGTGCAATATAAAAGTGTAATTAAAACATGTATGTTTT  950
      ||||||||||||||||| ||||||||||||| |   ||||||||||||||
seq2  AAGTCCAAGGTCTGTGC-ATATAAAAGTGTATT---AACATGTATGTTTT  943

seq1  ATACCCCAATTTATACCCCAAAACTGGTACCTGTGATGTTCAAAACTTAA  1000
      |||||   | |||||||||  |||||||| |||||||||    ||||| |
seq2  ATACC---AATTATACCCC--AACTGGTA-CTGTGATGT---CAACTT-A  983

seq1  TCAGGGATGTGAATATGTACTAAGAATCTAGTTGAGGCAGGAGGGAACTC  1050
      ||| ||||||||   |||||||   |||||||||||   |||||| ||||
seq2  TCA-GGATGTGA--TTGTACTA--GATCTAGTTGAG--CGGAGGG-ACTC  1025

seq1  TAAGCTTAGATTCAGAGGGGAAG  1073
      | ||||  |||||  ||||||||
seq2  T-AGCT--GATTC--AGGGGAAG  1043

seq1: chr12_90780697_90781779
seq2: B6Ng01-027P06.g_68_1099 (reverse)

seq1  CATGGACCATACATATATAATACCAATCATCACACCCATGGAACCAACAC  50
                                          |||||| | | |||
seq2  ------------------------------------CATGGACCAACCAC  14

seq1  CACAGTTATCTGTGATGTCTCATCTTCTCAGAGATTTCCCTTGTACTCTT  100
      ||||| ||| |||||||||| ||||| ||||||||||||| ||||||| |
seq2  CACAG-TATTTGTGATGTCT-ATCTTTTCAGAGATTTCCC-TGTACTC-T  60

seq1  CCAGTTAGATAGTCTCATTCTGCTCTCAAGCTTTCAGCCTTTGAATTGGT  150
       |||||||||||||||| |||||| || ||| ||||| ||||||||| ||
seq2  ACAGTTAGATAGTCTCA-TCTGCT-TCCAGC-TTCAG-CTTTGAATTAGT  106

seq1  ATCAGCATACATTTTCCACCTATTTTTGAGAAGATGTAATTTGAAATTTG  200
      ||||||||||| |||||| ||| |||||||||||||||| ||||||||||
seq2  ATCAGCATACA-TTTCCA-CTA-TTTTGAGAAGATGTAA-TTGAAATTTG  152

seq1  TAGTCTGTGATCTTTGGTGTGTTTCCTTTAGTTCTGTGTGATCCTTCAGA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGTGATC-TTGGTGTGTTTCCTTTAGTTCTGTGTGATCCTTCAGA  201

seq1  GTCTCTCCTAACTGTTAGCCACATCTCATCTATAGGAAGCAGCTGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTAACTGTTAGCCACATCTCATCTATAGGAAGCAGCTGGATTC  251

seq1  CATCTGAGGACCCCATCTCTGCTTTACTGCACAGAAATTTCCTTAGGAAA  350
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  CATCTGAGGACCCCATCTCTGCTTTACTGCACAGAAATTT-CTTAGG-AA  299

seq1  CTAAGCTGGGAGCAACCTTACAGCTCAGTTTCTTCCTCTCTTGTCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGGGAGCAACCTTACAGCTCAGTTTCTTCCTCTCTTGTCTTTCT  349

seq1  GGCAAACAGGTTTAGTCTGATGTCAGGAGGCTCACAACACATTATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACAGGTTTAGTCTGATGTCAGGAGGCTCACAACACATTATTTTTT  399

seq1  CTGTTGTCTTTTTCCTGGTTCCACTGAATCAATTTTTGGGATCCAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCTTTTTCCTGGTTCCACTGAATCAATTTTTGGGATCCAAGCTG  449

seq1  TTGTTTCATTTAGTTGCAAGTAGATGCTAAGCCCCCCTCCCCCATTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTTAGTTGCAAGTAGATGCTAAGCCCCCCTCCCCCATTCTGC  499

seq1  CTTACTTCATCTTTGTAAGGTGGGAAAAAGTAGAAGGTGGGGAGGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCATCTTTGTAAGGTGGGAAAAAGTAGAAGGTGGGGAGGGGAAT  549

seq1  ATAACCTGCAATATGCTGTGCTTTAAGCCACAAAACCTCAGAATAATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGCAATATGCTGTGCTTTAAGCCACAAAACCTCAGAATAATTCC  599

seq1  AAGCTTCCCATCAGCACCAGTGGGTGGTGTGACATGACCTGAGACCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCCATCAGCACCAGTGGGTGGTGTGACATGACCTGAGACCCAAT  649

seq1  TGATTTTTCTATTGGAAAACACTCCATTTCCAGTTATAGGCATTCTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTATTGGAAAACACTCCATTTCCAGTTATAGGCATTCTGATA  699

seq1  TCAAAGAACCCTCTGCAGCTAAAGAAAATGCTCTAAGAAGCTGCACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACCCTCTGCAGCTAAAGAAAATGCTCTAAGAAGCTGCACAAAG  749

seq1  CCAGTTAAATCCCTGCAAATGTGTCTCCATCCAGAGTTTCTCCATCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAAATCCCTGCAAATGTGTCTCCATCCAGAGTTTCTCCATCTGAG  799

seq1  TTTCTGTTCTGAGGTCCCTATAGCTTTTTCCTTCCAGTCCTCCAAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCTGAGGTCCCTATAGCTTTTTCCTTCCAGTCCTCCAAAAATA  849

seq1  TTTGATTAAGCTCTGTGGGTGCAAGGATGGATTTGGCTTCATTCAGCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAAGCTCTGTGGGTGCAAGGATGGATTTGGCTTCATTCAGCAAC  899

seq1  TGGCCACTTTTATTCTTTGTTTTAATTAAGTTATGGCTCGTTTTCTTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTTTTATTCTTTGTTTTAATTAAGTTATGGCTCGTTTTCTTCTC  949

seq1  TATGTTTATCTTGAGGGTTTTTGCCACCTGGTCAATGTCACTTTGCCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATCTTGAGGGTTTTTGCCACCTGGTCAATGTCACTTTGCCAAA  999

seq1  TGAGATTATAAAATGTTTTCAAACAGAGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  TGAGATTATAAAATGTTTTCAAACAGAGAATTC  1032