BAC Information

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BAC

Clone NameB6Ng01-028C01
Chromosome17 (Build37)12 (Build37)
Map Location 79,452,259 - 79,453,376103,107,933 - 103,108,188
singlet/doubletsingletsinglet
Overlap geneQpct
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425
Downstream geneLOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028C01.bB6Ng01-028C01.g
ACCDH858688DH858689
length1,101692
definitionDH858688|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C01, 5' end.DH858689|Mus musculus domesticus DNA, BAC clone: B6Ng01-028C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,452,259 - 79,453,376)(103,107,933 - 103,108,188)
sequence
gaattcagttgtggaaatctcatttaaggaattcagaataaaaatgattt
gccaagtcgctttgtgtgaagaaaatagattcacaattacttccttttct
tgtgcaacagttttgaaatcatgaaattgctacgagctgtgcaaacgatg
acggtttgggaataaaatggcatgtctttaaagaaactaggaaaagcatc
agtctagggatagaaccttgcgcgcgacattactaaacaagtactttaag
tgcttttagcgtttctgcacgtccaacatgctcattcccagctagtttca
tgcactagtgtatgaatggcccacttcaggtgagctcaagcatagccaac
ttcttttcaggactcacaacagatccccatttacacggggagtctggagt
gggtgtgggaagtcaacaccgtacaacttcagtctctccagaatgagtca
aacggcttcccccagaggctgggaagtacttctcaagccgttgagtagaa
tcctctcctgcactgctttggggtacctgggaggtcaagcaccgagaagg
gactttaaaaccagagtgtcgcacaaggccaaatgtgtctttaaaacgta
ttttaatggatgagaaatattgtcaggggctgagctccactcggggtctg
tctgtgggcaggtgtagcagccagggttgtttctaggtgggagaacatcc
tgtgattctttttctttaagagaaaatttcctttttattgattcgtctct
catatattaatccctactgcaatttcccctccctctgctcccctctttcc
ttctggattcactctctcctccacctctcctcagaaaagagcaggcctcc
tagggatgttaaccaaacaggacgtacaacctacattaagaccaggcaca
cattctcacatcaaggctggatgaggcaaccagtatgggaagagggtccc
aaagtcagcaaagaatcggagacagctcctgctcactggtaggaatcccc
aagataccagccacatactgaactagtatgtggaagaccaggtcagactc
ctacggcttcctgatcttggaacccactgaagtctggtcagtgattcgag
a
gaattccaggacagccaggactgcaaaccaaaaaaaaaaaaaaaaaagaa
agaaagaaagaaaggaaggaaggaaggaaggaaggaaagaaggaaggaag
gaagaaagaaaaaaagaaagatgaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaagg
aagaaaggaaggaaggaaggaaggaaggaaggaaggaagaaaggaagaaa
ggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaagg
aagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaa
gaaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaaga
aagaaagaaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaacatgtggtatttgaccttccaag
cctggaatacttcaattcatataatactttccacttccgttcattttctg
aaattttcataatttcatttttcctttatggttgaatgaaaccccattgt
atatatatagcatactttgtttttccatttatctgttaatgggcatctaa
gttgattccacttccttgatattatgcatacaacaataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79452259_79453376
seq2: B6Ng01-028C01.b_44_1144

seq1  GAATTCAGTTGTGGAAATCTCATTTAAGGAATTCAGAATAAAAATGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTGGAAATCTCATTTAAGGAATTCAGAATAAAAATGATTT  50

seq1  GCCAAGTCGCTTTGTGTGAAGAAAATAGATTCACAATTACTTCCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCGCTTTGTGTGAAGAAAATAGATTCACAATTACTTCCTTTTCT  100

seq1  TGTGCAACAGTTTTGAAATCATGAAATTGCTACGAGCTGTGCAAACGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACAGTTTTGAAATCATGAAATTGCTACGAGCTGTGCAAACGATG  150

seq1  ACGGTTTGGGAATAAAATGGCATGTCTTTAAAGAAACTAGGAAAAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTGGGAATAAAATGGCATGTCTTTAAAGAAACTAGGAAAAGCATC  200

seq1  AGTCTAGGGATAGAACCTTGCGCGCGACATTACTAAACAAGTACTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGGATAGAACCTTGCGCGCGACATTACTAAACAAGTACTTTAAG  250

seq1  TGCTTTTAGCGTTTCTGCACGTCCAACATGCTCATTCCCAGCTAGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGCGTTTCTGCACGTCCAACATGCTCATTCCCAGCTAGTTTCA  300

seq1  TGCACTAGTGTATGAATGGCCCACTTCAGGTGAGCTCAAGCATAGCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAGTGTATGAATGGCCCACTTCAGGTGAGCTCAAGCATAGCCAAC  350

seq1  TTCTTTTCAGGACTCACAACAGATCCCCATTTACACGGGGAGTCTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCAGGACTCACAACAGATCCCCATTTACACGGGGAGTCTGGAGT  400

seq1  GGGTGTGGGAAGTCAACACCGTACAACTTCAGTCTCTCCAGAATGAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGGAAGTCAACACCGTACAACTTCAGTCTCTCCAGAATGAGTCA  450

seq1  AACGGCTTCCCCCAGAGGCTGGGAAGTACTTCTCAAGCCGTTGAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCTTCCCCCAGAGGCTGGGAAGTACTTCTCAAGCCGTTGAGTAGAA  500

seq1  TCCTCTCCTGCACTGCTTTGGGGTACCTGGGAGGTCAAGCACCGAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTGCACTGCTTTGGGGTACCTGGGAGGTCAAGCACCGAGAAGG  550

seq1  GACTTTAAAACCAGAGTGTCGCACAAGGCCAAATGTGTCTTTAAAACGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAAACCAGAGTGTCGCACAAGGCCAAATGTGTCTTTAAAACGTA  600

seq1  TTTTAATGGATGAGAAATATTGTCAGGGGCTGAGCTCCACTCGGGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGGATGAGAAATATTGTCAGGGGCTGAGCTCCACTCGGGGTCTG  650

seq1  TCTGTGGGCAGGTGTAGCAGCCAGGGTTGTTTCTAGGTGGGAGAACATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGCAGGTGTAGCAGCCAGGGTTGTTTCTAGGTGGGAGAACATCC  700

seq1  TGTGATTCTTTTTCTTTAAGAGAAAATTTCCTTTTTATTGATTCGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTTTTTCTTTAAGAGAAAATTTCCTTTTTATTGATTCGTCTCT  750

seq1  CATATATTAATCCCTACTGCAATTTCCCCTCCCTCTGCTCCCCTCTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTAATCCCTACTGCAATTTCCCCTCCCTCTGCTCCCCTCTTTCC  800

seq1  TTCTGGATTCACTCTCTCCTCCACCTCTCCTCAGAAAAGAGCAGGCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATTCACTCTCTCCTCCACCTCTCCTCAGAAAAGAGCAGGCCTCC  850

seq1  TAGGGATGTTAACCAAACAGGACGTTACAACCTACATTAGGACCAGGCAC  900
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TAGGGATGTTAACCAAACAGGACG-TACAACCTACATTAAGACCAGGCAC  899

seq1  ACATTCTCACATCAAGGCTGGATGAGGCAACCCAGTAATGGGAAGAGGGT  950
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  ACATTCTCACATCAAGGCTGGATGAGGCAA-CCAGT-ATGGGAAGAGGGT  947

seq1  CCCAAAGTCAGGCAAAAGAATCGGAGACAGCTCCTGCTCCCACTGTTAGG  1000
      |||||||||||   ||||||||||||||||||||||||  ||||| ||||
seq2  CCCAAAGTCAG--CAAAGAATCGGAGACAGCTCCTGCT--CACTGGTAGG  993

seq1  AATCCCCCAAGAACACCAGGCTACATAACTGTAACATGTATGTGGAGGAC  1050
      ||| ||||||| | |||| || |||| |||| |||  ||||||||| || 
seq2  AAT-CCCCAAG-ATACCA-GCCACAT-ACTG-AACTAGTATGTGGAAGA-  1037

seq1  CCAGGTCAGACTCCTACAGGCTCTCTGATCTCTGAACCCACTTGAGTTCT  1100
      ||||||||||||||||| ||||  |||||||  |||||||| |||  |||
seq2  CCAGGTCAGACTCCTAC-GGCTTCCTGATCTTGGAACCCAC-TGAAGTCT  1085

seq1  GGTCAGTTGATTCCGAGA  1118
      |||||| ||||| |||||
seq2  GGTCAG-TGATT-CGAGA  1101

seq1: chr12_103107933_103108188
seq2: B6Ng01-028C01.g_67_161

seq1  GAATTCCAGGACAGCCAGGGCTATTGCACAAAACAAGCAGACAACAAACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAGGAAAGAGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGAACTTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAA  200
         ||  ||||||||||||||| || || |   |||          ||||
seq2  ---GAATTCCAGGACAGCCAGGACTGCAAACCAAAA----------AAAA  37

seq1  ACCAAAAAAAAAAAAAAAGAA--GAAGGAAGGAAGGAAGGAAGGAAGGAA  248
      |  ||||||| ||| ||||||   ||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAA  87

seq1  GGAAGGAA  256
       |||||||
seq2  AGAAGGAA  95