BAC Information

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BAC

Clone NameB6Ng01-028H15
Chromosome12 (Build37)
Map Location 74,990,438 - 75,114,452
singlet/doubletdoublet
Overlap geneHif1a, EG277089, Snapc1, Syt16
Upstream geneSix6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489
Downstream gene1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028H15.bB6Ng01-028H15.g
ACCDH858942DH858943
length1,0281,073
definitionDH858942|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H15, 5' end.DH858943|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,113,393 - 75,114,452)(74,990,438 - 74,991,520)
sequence
gaattcatgagagaaaataaaaagtatactgagcactactaatgcaaaag
agggctgtgggtaaagatggctacctccaagcctgggtttgaaccctagg
gcccacgtggcagaaggaagaaatcaatttgtcctctgacactctctctc
tctctctctctctctctctctctctctctcacacacacacacacacacac
acacacacacacacacacacacacataatcttaaaagggtttttatgggc
tggagagattgcgcagtggttaagaacttgtcgctcttacagaagatctg
agtttggctccaagcacccacagccatgcataatttcggttccaggggag
gctgtgtattcccacctgtacagctacaaggaatgcacatggcatgcata
catacatgcaggcaaaacactcctatacatatagtgataaaaataaataa
attaacttaattaaaaggtcttttacatatccaaagcaatctagaaaatc
atgccagcagagtggcacacaagtgaaccccagcagtgagcagcacaggc
aggcggaccatcagtttggagccagtgctggttatatagcaggggctgtg
actcacaaatggaaatgaagaggggcatcaagaaaagcattgtggaagaa
actaagacaaacatacgtgaacgcatgtgtcccctgtgacttggtgggca
gtcaggggtgccccctggtcctcccattgccttggcaagctgccctaagt
caacagctaaataaatcacactttggttttgtttggtttgtttagtagtt
gaatgggttctcttgtctgtattaaaaacaacaaaaaaaactggctattg
aagaaaagaaaagagtagcaaattactctataggaaatgatccaagctca
ttccataaggcaaaaaactgagatggccaggtaggacgactgaagctaac
ggctgtcttcattcaagattgtttatgtttctaagatgtgaccttctttc
tctcaaataccacctggctactacattc
gaattcattgcagtcggtacacacacacacacacacacacacacacacac
acacacactccaatcctgaaccacagaggcttgaattcaggtcaatctct
tctataagtcaagttcttcaggatggataattatgaaataaagttaaaag
tctcactttataaaaatgagtagtaacaatgtattaaaatgtattttttt
taaacattaagaccagcataacttcagagagatctctctttgtgtgagag
ttaagaaacccttgtgcttctgacctctctgaactttcatgtcctcctct
gcttcctcctcctgtttccccctggggggtggggagtgtgaatcaatcca
ctttgcacttagagataaatacttgtacttctctgcagctctctgctact
gctctttatatgtttgtacaaaaaaaaaaaaaaaaaaaaaagaaacttct
tgaaacatgaacgagcctatagacatttatttaccaaggattgacaacag
aagtgttatggacaaagtttgcaattgtgaccaccaggttgctaagctca
gtcagtctggagatttgggttatgttctagcatagctgctgagattggct
ttcctggaaatgtacttggaatccaaaggttacagtcagaacgttttctt
gagcagagctgtaaggagatgcacttgtaaagagaagaagacagacttgt
ggtgtgggagaagccatggtacagcctgcttgtcgctgagacttcagcta
aataacagggagctcttgagctgggttgaccttgccaagttgctccagac
tgggaaagctgtgccaattcaccagcaatcagctaactactaccccacag
ggaggttgctagagagagggctacaagcttccagccgatatctcagcagc
cccattgattttgccagtgaccaaaatgcagagtatgctactatgttgag
tatcccaggtaatctgagtgagccattcatgctgggcacttcaagctgca
gatatcacctgaggcctgtgggcatgtggtctgtttacttgagccccagc
cttgcaaccactgttggatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75113393_75114452
seq2: B6Ng01-028H15.b_36_1063 (reverse)

seq1  GAATGTAGTGAGCCAGGTGGTATTTTGGAGAGAAAGAAGTTCACATCTTA  50
      ||||||||| |||||||||||||||  |||||||||||| ||||||||||
seq2  GAATGTAGT-AGCCAGGTGGTATTT--GAGAGAAAGAAGGTCACATCTTA  47

seq1  GAAACATAAACAATCTTGAATTGAAGACCAGCCCTGTAGCCTCTCAGCTC  100
      |||||||||||||||||||| |||||| ||||| | ||||   |||| ||
seq2  GAAACATAAACAATCTTGAA-TGAAGA-CAGCCGT-TAGC--TTCAG-TC  91

seq1  TGTCCCTCCCCTGCCCACTCCTCAGTGTCTTCTGGCCTCTGTGGAATGAG  150
       ||||    |||| |||   ||||||   || | |||| | |||||||||
seq2  -GTCC--TACCTGGCCA--TCTCAGT---TTTTTGCCT-TATGGAATGAG  132

seq1  CTTTGGATTCATTTTCCTATAGAGTAATTCTGCTACTCTTTTTCCTTTTC  200
      | ||||| ||| ||||||||||||||||| ||||||||||||  ||||||
seq2  C-TTGGA-TCA-TTTCCTATAGAGTAATT-TGCTACTCTTTT--CTTTTC  176

seq1  TTCAATAGCCAGTTTTTTTTTGTTTGTTTTTTAATTACAGACAAGAGAAC  250
      ||||||||||||||||||||   ||||||||  | |||||||||||||||
seq2  TTCAATAGCCAGTTTTTTTT--GTTGTTTTT--AATACAGACAAGAGAAC  222

seq1  CCATTCAACTACTAAAACAAAACCAAACAAAAACCAAAGTGTGATTTATT  300
      ||||||||||||||||   ||||||||| |||||||||||||||||||||
seq2  CCATTCAACTACTAAA--CAAACCAAAC-AAAACCAAAGTGTGATTTATT  269

seq1  TAGCTGTTGACTCTAGGGCAGCTTGCCAAGGCAATGGGAGGACCAGGGGG  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTGACT-TAGGGCAGCTTGCCAAGGCAATGGGAGGACCAGGGGG  318

seq1  CACCCCTGACTGCCCACCAAGTCACAGGGGACACCTGCGTTCACGTATGT  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACCCCTGACTGCCCACCAAGTCACAGGGGACACATGCGTTCACGTATGT  368

seq1  TTGTCTTAGTTTCTTCCACAATGCTTTTCTTGATGCCCCTCTTCATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAGTTTCTTCCACAATGCTTTTCTTGATGCCCCTCTTCATTTCC  418

seq1  ATTTGTGAGTCACAGCCCCTGCTATATAACCAGCACTGGCTCCAAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAGTCACAGCCCCTGCTATATAACCAGCACTGGCTCCAAACTGA  468

seq1  TGGTCCGCCTGCCTGTGCTGCTCACTGCTGGGGTTCACTTGTGTGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCGCCTGCCTGTGCTGCTCACTGCTGGGGTTCACTTGTGTGCCACT  518

seq1  CTGCTGGCATGATTTTCTAGATTGCTTTGGATATGTAAAAGACCTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCATGATTTTCTAGATTGCTTTGGATATGTAAAAGACCTTTTAA  568

seq1  TTAAGTTAATTTATTTATTTTTATCACTATATGTATAGGAGTGTTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAATTTATTTATTTTTATCACTATATGTATAGGAGTGTTTTGCC  618

seq1  TGCATGTATGTATGCATGCCATGTGCATTCCTTGTAGCTGTACAGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATGTATGCATGCCATGTGCATTCCTTGTAGCTGTACAGGTGGG  668

seq1  AATACACAGCCTCCCCTGGAACCGAAATTATGCATGGCTGTGGGTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACAGCCTCCCCTGGAACCGAAATTATGCATGGCTGTGGGTGCTTG  718

seq1  GAGCCAAACTCAGATCTTCTGTAAGAGCGACAAGTTCTTAACCACTGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAACTCAGATCTTCTGTAAGAGCGACAAGTTCTTAACCACTGCGC  768

seq1  AATCTCTCCAGCCCATAAAAACCCTTTTAAGATTATGTGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCCAGCCCATAAAAACCCTTTTAAGATTATGTGTGTGTGTGTGT  818

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGA  868

seq1  GAGAGAGAGAGAGAGAGAGTGTCAGAGGACAAATTGATTTCTTCCTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGTGTCAGAGGACAAATTGATTTCTTCCTTCTG  918

seq1  CCACGTGGGCCCTAGGGTTCAAACCCAGGCTTGGAGGTAGCCATCTTTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGGCCCTAGGGTTCAAACCCAGGCTTGGAGGTAGCCATCTTTAC  968

seq1  CCACAGCCCTCTTTTGCATTAGTAGTGCTCAGTATACTTTTTATTTTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCCTCTTTTGCATTAGTAGTGCTCAGTATACTTTTTATTTTCTC  1018

seq1  TCATGAATTC  1060
      ||||||||||
seq2  TCATGAATTC  1028

seq1: chr12_74990438_74991520
seq2: B6Ng01-028H15.g_66_1138

seq1  GAATTCATTGCAGTCGGTACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAGTCGGTACACACACACACACACACACACACACACACAC  50

seq1  ACACACACTCCAATCCTGAACCACAGAGGCTTGAATTCAGGTCAATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTCCAATCCTGAACCACAGAGGCTTGAATTCAGGTCAATCTCT  100

seq1  TCTATAAGTCAAGTTCTTCAGGATGGATAATTATGAAATAAAGTTAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGTCAAGTTCTTCAGGATGGATAATTATGAAATAAAGTTAAAAG  150

seq1  TCTCACTTTATAAAAATGAGTAGTAACAATGTATTAAAATGTATTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTATAAAAATGAGTAGTAACAATGTATTAAAATGTATTTTTTT  200

seq1  TAAACATTAAGACCAGCATAACTTCAGAGAGATCTCTCTTTGTGTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTAAGACCAGCATAACTTCAGAGAGATCTCTCTTTGTGTGAGAG  250

seq1  TTAAGAAACCCTTGTGCTTCTGACCTCTCTGAACTTTCATGTCCTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACCCTTGTGCTTCTGACCTCTCTGAACTTTCATGTCCTCCTCT  300

seq1  GCTTCCTCCTCCTGTTTCCCCCTGGGGGGTGGGGAGTGTGAATCAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCTCCTGTTTCCCCCTGGGGGGTGGGGAGTGTGAATCAATCCA  350

seq1  CTTTGCACTTAGAGATAAATACTTGTACTTCTCTGCAGCTCTCTGCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCACTTAGAGATAAATACTTGTACTTCTCTGCAGCTCTCTGCTACT  400

seq1  GCTCTTTATATGTTTGTACAAAAAAAAAAAAAAAAAAAAAAGAAACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTATATGTTTGTACAAAAAAAAAAAAAAAAAAAAAAGAAACTTCT  450

seq1  TGAAACATGAACGAGCCTATAGACATTTATTTACCAAGGATTGACAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATGAACGAGCCTATAGACATTTATTTACCAAGGATTGACAACAG  500

seq1  AAGTGTTATGGACAAAGTTTGCAATTGTGACCACCAGGTTGCTAAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTATGGACAAAGTTTGCAATTGTGACCACCAGGTTGCTAAGCTCA  550

seq1  GTCAGTCTGGAGATTTGGGTTATGTTCTAGCATAGCTGCTGAGATTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGGAGATTTGGGTTATGTTCTAGCATAGCTGCTGAGATTGGCT  600

seq1  TTCCTGGAAATGTACTTGGAATCCAAAGGTTACAGTCAGAACG-TTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCCTGGAAATGTACTTGGAATCCAAAGGTTACAGTCAGAACGTTTTCTT  650

seq1  GAGCAGAGCTGTAAGGAGATGCACTTGTAAAGAGAAGAAGACAGACTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCTGTAAGGAGATGCACTTGTAAAGAGAAGAAGACAGACTTGT  700

seq1  GGTGTGGGAGAAGCCATGGTACAGCCTGCTTGTCGCTGAGACTTCAGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGAGAAGCCATGGTACAGCCTGCTTGTCGCTGAGACTTCAGCTA  750

seq1  AATAACAGGGAGCTCTTGAGCTGGGTTGACCTTGCCAAGTTGCCCCAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATAACAGGGAGCTCTTGAGCTGGGTTGACCTTGCCAAGTTGCTCCAGAC  800

seq1  TGGGAAAGCTGTGCCAATTCACCAGCAATCAGCTAACTACTACCCCACA-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGAAAGCTGTGCCAATTCACCAGCAATCAGCTAACTACTACCCCACAG  850

seq1  GGAGGTTGCTAGAGAGAGGGCTACAAGCTTCCAGCCGATATTCTCAGCAG  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGGTTGCTAGAGAGAGGGCTACAAGCTTCCAGCCGATA-TCTCAGCAG  899

seq1  CCACCATTGAATATGCCAGTGACCAAGAAGGCAGAGTAGGCTACCATGTA  948
      || ||||||| | ||||||||||||| || |||||||| ||||| |||| 
seq2  CC-CCATTGATTTTGCCAGTGACCAA-AATGCAGAGTATGCTACTATGTT  947

seq1  GAGTCATTCCCAGGTGAATCTGAGTGAGCCCATCTCATGCTGGGCAGCTC  998
      ||||   |||||||| |||||||||||| |||| ||||||||||||  ||
seq2  GAGT--ATCCCAGGT-AATCTGAGTGAG-CCAT-TCATGCTGGGCACTTC  992

seq1  CAGCTGCAG-TATCACCTGAGGCCTTGTGGCCATGTGGTCTGTTTTACTG  1047
       |||||||| |||||||||||||| ||||| ||||||||||| |||||| 
seq2  AAGCTGCAGATATCACCTGAGGCC-TGTGGGCATGTGGTCTG-TTTACT-  1039

seq1  TGGCCACAAGCCTGCCAAGCAACTGTTTGGATGCTC  1083
      ||  | | |||||  ||| | |||| ||||||||||
seq2  TGAGCCCCAGCCTTGCAA-CCACTG-TTGGATGCTC  1073