BAC Information

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BAC

Clone NameB6Ng01-028K02
Chromosome10 (Build37)12 (Build37)
Map Location 70,728,183 - 70,729,37311,826,975 - 11,827,491
singlet/doubletsingletsinglet
Overlap geneUbe2d1
Upstream geneSlc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam
Downstream geneLOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028K02.bB6Ng01-028K02.g
ACCDH859059DH859060
length1,1851,031
definitionDH859059|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K02, 5' end.DH859060|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,728,183 - 70,729,373)(11,826,975 - 11,827,491)
sequence
gaattcattatgtagaccagattggctttgaactcacagagatcagccaa
caggcctagctctaaacataacgtaaaccagtacttgcttgaactcattt
taactggtcaatcagaaaaatgcaggttctaactgtggcttaaaaactat
taatgatctgcatatgcacatttgcatcatgataatgtgctaagactaaa
tcaggtatagatgcaaatgcacactaattacttttgtttattaacaagcc
aagccaaaaccacatggcagctgcaattgctttgaaccctattcaaatct
caaatgtcaaactgttcttcaaatctctttaaagtattacatttacaaga
aatgtcttattctcgtttttttaagcaaaattcattttatgttatgtatg
tgagtacactgcagctgtcctcagacacaccagaagagggcatcagattc
cattacaggtggttgtgagccaccatgtggttgttgggaattgaactcag
gcctctagaagaggcccctcgttattattatttaaagtcctaattccact
tcctttctggaagagggagggtgatggatgagaccataaatcaacaaact
taagaagtaaactctgtaagggccaggttcttaaggtatctgtggtgagc
tcacccaccataagagagaacgagctgacagaacaacagacagccttaaa
tatgtcctgctaggctgtcagggaatatgcaaccacagccccacggggta
cagttcaggcagaatgagcaacagacagcaagggtgcgagacacacgttc
ctccctcacctgcaaaaatacagatcttaagtgcaaaaggagagcaacga
ggtgtcttaggaaattctgagatgacctcatgaggcgaaatataacactg
tgactatgcagtctataaaaccacatccaagcataccagcacccacattg
gcccttacgtcagctcagcatcagtcaatgtggttgtagtggacacaggg
ggagtcaagggttgctgagcgatattgcttctttccaactccctacattc
ggagcgcgtggtactttcttggcagtaggaagattccttacccactgttt
tctgttagatcataatttggatgaatcaaaaaaaaataattaaatggaga
tactcaggtttacccctgaatagactagctactta
gaattccacgagtcaagcactctagacctttctacacgcagtatctgaag
cataaaatccacccgggaaggtaaatgttcctttttccttatgagtatgg
aaaattactatccaaagaccttaaacaatttttccaaagaaatggtcaaa
ttcaaatcagagcttgcagatctgtctctaaatgtggtgtgttgtagcat
gtaatggttgacatatacttggcccagggagtgacactattagaaggtgt
ggacctgttggagtaggcgttgcctcgttggaatgggtgtgactttgttg
gagtgggcgtggccttgttgcagtgggtgtggccttattggaggaagtgt
gtcgctgtgggtgtgggctttaagacaaaaagaccaccaacagattggga
aaggatctttacctatcctaaatcagataggggactaatatccaacatat
gtaaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaa
aaatggggctcagaactgaacaaagaattctcacctgaggaataccgaat
ggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaa
tgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct
aagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaag
aggaacactcctccattgttggtgggattgcaggcttgtacaaccactct
ggaaatcagtctggcggttcctcagaaaattggacatagtactaccggag
gatccagcaataccttttctgggcatatatccagaagatgccccaactgg
taagaaggacacatgctccactatgttcatagcagccttatttataatag
ccagaggctggaaagaaccagatgctcctcaacagaggaatggatacaga
aaatgtggtacatctacacaatggagtactactcagctataaaaaaatga
atttatgaaattcctagccaaatggatggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_70728183_70729373
seq2: B6Ng01-028K02.b_29_1213

seq1  GAATTCATTATGTAGACCAGATTGGCTTTGAACTCACAGAGATCAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATGTAGACCAGATTGGCTTTGAACTCACAGAGATCAGCCAA  50

seq1  CAGGCCTAGCTCTAAACATAACGTAAACCAGTACTTGCTTGAACTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTAGCTCTAAACATAACGTAAACCAGTACTTGCTTGAACTCATTT  100

seq1  TAACTGGTCAATCAGAAAAATGCAGGTTCTAACTGTGGCTTAAAAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTCAATCAGAAAAATGCAGGTTCTAACTGTGGCTTAAAAACTAT  150

seq1  TAATGATCTGCATATGCACATTTGCATCATGATAATGTGCTAAGACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCTGCATATGCACATTTGCATCATGATAATGTGCTAAGACTAAA  200

seq1  TCAGGTATAGATGCAAATGCACACTAATTACTTTTGTTTATTAACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATAGATGCAAATGCACACTAATTACTTTTGTTTATTAACAAGCC  250

seq1  AAGCCAAAACCACATGGCAGCTGCAATTGCTTTGAACCCTATTCAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAACCACATGGCAGCTGCAATTGCTTTGAACCCTATTCAAATCT  300

seq1  CAAATGTCAAACTGTTCTTCAAATCTCTTTAAAGTATTACATTTACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCAAACTGTTCTTCAAATCTCTTTAAAGTATTACATTTACAAGA  350

seq1  AATGTCTTATTCTCGTTTTTTTAAGCAAAATTCATTTTATGTTATGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTATTCTCGTTTTTTTAAGCAAAATTCATTTTATGTTATGTATG  400

seq1  TGAGTACACTGCAGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACACTGCAGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATTC  450

seq1  CATTACAGGTGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGGTGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAG  500

seq1  GCCTCTAGAAGAGGCCCCTCGTTATTATTATTTAAAGTCCTAATTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGAAGAGGCCCCTCGTTATTATTATTTAAAGTCCTAATTCCACT  550

seq1  TCCTTTCTGGAAGAGGGAGGGTGATGGATGAGACCATAAATCAACAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGGAAGAGGGAGGGTGATGGATGAGACCATAAATCAACAAACT  600

seq1  TAAGAAGTAAACTCTGTAAGGGCCAGGTTCTTAAGGTATCTGTGGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTAAACTCTGTAAGGGCCAGGTTCTTAAGGTATCTGTGGTGAGC  650

seq1  TCACCCACCATAAGAGAGAACGAGCTGACAGAACAACAGACAGCCTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACCATAAGAGAGAACGAGCTGACAGAACAACAGACAGCCTTAAA  700

seq1  TATGTCCTGCTAGGCTGTCAGGGAATATGCAACCACAGCCCCACGGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTGCTAGGCTGTCAGGGAATATGCAACCACAGCCCCACGGGGTA  750

seq1  CAGTTCAGGCAGAATGAGCAACAGACAGCAAGGGTGCGAGACACACGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGGCAGAATGAGCAACAGACAGCAAGGGTGCGAGACACACGTTC  800

seq1  CTCCCTCACCTGCAAAAATACAGATCTTAAGTGCAAAAGGAGAGCAACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACCTGCAAAAATACAGATCTTAAGTGCAAAAGGAGAGCAACGA  850

seq1  GGTGTCTTAGGAAATTCTGAGATGACCTCATGAGGCGAAAATATAACACT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTGTCTTAGGAAATTCTGAGATGACCTCATGAGGCG-AAATATAACACT  899

seq1  GTGACTATGCAGTCTATAAAAACCACATCCAAGCATACCAGCACCCACAT  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGACTATGCAGTCTAT-AAAACCACATCCAAGCATACCAGCACCCACAT  948

seq1  TGGCCCTTACGTCAGCTCAGCATCAGTCAATGTGGTTGTAGTGGACACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTACGTCAGCTCAGCATCAGTCAATGTGGTTGTAGTGGACACAG  998

seq1  GGGGAGTCAAGGGTTGCTGAGCGATA-TGC-TCTTTCCAAACTCCCTTAC  1048
      |||||||||||||||||||||||||| ||| ||||||| ||||||| |||
seq2  GGGGAGTCAAGGGTTGCTGAGCGATATTGCTTCTTTCC-AACTCCC-TAC  1046

seq1  AATCCGAGCGCGTGGTACTTTCTCTGCAGTAAGGAAGATTCCCTACCCAC  1098
      | || ||||||||||||||||||  ||||| ||||||||||| |||||||
seq2  ATTCGGAGCGCGTGGTACTTTCTTGGCAGT-AGGAAGATTCCTTACCCAC  1095

seq1  CTGTTTCTGTTAGATCATATATTTGATGATTCAAAAAAAAAATAATTCAA  1148
         ||||||||||||||||  || ||||| || |||||||||||||| ||
seq2  TGTTTTCTGTTAGATCATAATTTGGATGAATC-AAAAAAAAATAATTAAA  1144

seq1  T-GAGATAACTCAAGTTTAACCACCTGAAT-GACTCAGCTACTTA  1191
      | ||||| ||||| |||||  | ||||||| |||| |||||||||
seq2  TGGAGAT-ACTCAGGTTTA--CCCCTGAATAGACT-AGCTACTTA  1185

seq1: chr12_11826975_11827491
seq2: B6Ng01-028K02.g_777_1079 (reverse)

seq1  GAATTTCATAAATTCATTGGGTTTTTTTTTGAATTAATTTTTTATTAGGT  50
      |||||||||||||||||                    ||||||| |||  
seq2  GAATTTCATAAATTCAT--------------------TTTTTTA-TAG--  27

seq1  ATTTTTCTCATTACATTTCCAATGCTATCCAAAAAGTCCCCAATATACTC  100
            || | ||    |||| || | |      ||      || |||  
seq2  ------CTGAGTAGTACTCCATTG-TGT------AG------ATGTAC--  56

seq1  CCCCCCCCACTCCCCTAGCCACCCACTCCCACTTTTTGGCCCTGGCATTC  150
                                 | || ||| ||   |   |||||
seq2  ---------------------------CACATTTTCTGTATC---CATTC  76

seq1  CCCTGTACTGGGGCATATAAAGTTTACAAGTCCAATGGGCCCCTCTTTCC  200
      | ||||   || |||| |                   ||    |||||||
seq2  CTCTGTTGAGGAGCATCT-------------------GG---TTCTTTCC  104

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACAT-ATGCAGCTAGAGTCAA  249
      ||       |  || |||     | | ||| || | || ||||   | ||
seq2  AG-------CCTCT-GGC-----TATTATAAATAAGGCTGCTA---TGAA  138

seq1  GAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTACAGGGTTG  299
       |                ||||  |  ||| ||| |  | |||  | | |
seq2  CA----------------TAGTGGAGCATG-TGTCCTTCTTACCAGTTGG  171

seq1  CAGATCTCTTTAGCTTCTTGGATACTTTCTCTAGCTCCTCCATTTGGGAC  349
         ||        |||| ||||||  | |          |||     || 
seq2  GGCAT--------CTTC-TGGATATATGC----------CCA-----GAA  197

seq1  CCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTATGTGTTTGCT  399
         ||          || ||||     || | |||               
seq2  AAGGT----------ATTGCTG-----GATCCTCC---------------  217

seq1  AGGCCCCAGCCTAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTTAAT  449
       ||        ||||              ||||      ||||    |||
seq2  -GG--------TAGT-------------ACTAT------GTCC----AAT  235

seq1  TTTCTGAGGAACTTCCAGACTGACTTCCAGAGTGGTTGTACAAGCTTGCA  499
      ||||||||||||  ||||||||| ||||||||||||||||||||| ||||
seq2  TTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCA  285

seq1  ATCCCACCAGCAATAGAG  517
      ||||||||| |||| |||
seq2  ATCCCACCAACAATGGAG  303