BAC Information

Click to search

BAC

Clone NameB6Ng01-029C01
Chromosome12 (Build37)
Map Location 77,787,660 - 77,930,810
singlet/doubletdoublet
Overlap geneSpnb1, Churc1, Gpx2, Rab15
Upstream geneSgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3
Downstream geneFntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C01.bB6Ng01-029C01.g
ACCDH859415DH859416
length1,0641,065
definitionDH859415|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C01, 5' end.DH859416|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,929,738 - 77,930,810)(77,787,660 - 77,788,731)
sequence
gaattccatcatgctggggtctcctattaccaagatagagagaccaccaa
gtgagcttgctggcctgactttaagcacttaggggaattccagggtaggt
gggctttgtcttactctatctctaggcattccagaaccattaccagggtg
tgatgggtggaaactgctgcagaggaatcctgggtaggttgtttgcttgc
ttgtttgcttgtttgtttgtttgtttgcttgtttgtttctagtaactgac
ttgccaaggcttgcctggacttgcccagctcttaggcctactctcttaaa
ctaccaaggtgaagtctgtcatggggttagcctagccttctcagtaggtg
tttgaacatataatgaaagccattattatttataattaatatgtgctaat
aagaatatgtaacaataacaatacagattttcccagaccctagactgacc
actgaatgggactctttggagtggagaccacatcccagcaggtttacggt
cctgtaaacaattctgctgtattagtgttgacagaattgcttactgtcca
tcagagccctgctccccttctagaggcagggggggcttctgcaaggggcc
actctacagtccactgctgtccattatgtctaggcctggcccttaaaaac
attctactcaatccgctaccagctagaagctgatgcctagagcagccctc
tctgcaaaggagcagcaagtctagaaatgaaaactctcaactaacaaaga
aatctcccagtttctctactccaccggacaaaagcggctcctttagagat
tccaaattagtttcttgacaaataaacgataaacattctaatattccaac
attctgattttttttgagcatttttatctccaagtccttcacgaagtctt
tctggcgtatgctgaccacagtggtgcctctctccctcttctgttgacag
agcccttcccctaagaatctaattctggatatacaaatacacggtggaaa
cacagttcgcatctggatgtgtgtgggaagtcctctctgattttgctgca
atgtgggggttaat
gaattccaggccaaagagggctacatagtaaaactaagtatgtgctatat
atatgtatgcatgtatgtatacacacacacacacacacacacacacacac
acacacacacacaggacttcagatatctgaattcttgcccctagatgttt
gttttactaaccatttgaatttactattgccagaaataagagaaacattt
gttgtctaaatgtgtatgttcaaaggactgtggacacactgggctcttga
tcctttaacacaagagatcagctccacactaggaaatctgataaagaaaa
cccaagctacagtgacaatagcaactagcatttgtggctcactgaccatg
cgccaggcaggcatctggggcacatttgtgtccatgccttagtagacacc
tctctgccaggtggatatctttatttagtctccattttagtgaggagtgt
taggtttccggccccggggacaaaggactgaggtgcttattttacacacc
atagcaagcctgacctccaggttctcccagcatccctcagtccctacctg
gcatactctgtccccaaccttgaactttccagccaaggggaaggggctgg
gcccagaggctcctctcttcataatccagacatttttgtgttctctctct
ctctttctccccctctctctctctctttccttctctctcttctctcctct
ctccaccaacaggcccgtttctctttctctctcccttccccatgccccct
cctgtccccatggcgacttccctggccttggtccttagggccagtgaacc
cacctgcccgagagcagcttcccaataaacctgcctttaatctaatctaa
tctggtttaaattggctcatttcaccagcggctcagaaataatccatcaa
gaaggaaaatgaagctttcaagtcaggtagccacacagtgagtacctgat
cccaagtcagctaagactgtagccattgcatgtactctctctgccatgcc
gcaccgcacggcaggagtttctactaggaatgaagtcactctgacgaaga
atggaatatactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77929738_77930810
seq2: B6Ng01-029C01.b_45_1108 (reverse)

seq1  ATTAAGACCCCACATTGCAGCAAAAAATCAAGGAGAGACTTCCCACACAC  50
      |||||  ||||||||||||||  |||||||  ||| ||||||||||||||
seq2  ATTAA-CCCCCACATTGCAGC--AAAATCAGAGAG-GACTTCCCACACAC  46

seq1  ATCCAGATGGCGGACTGTGTTTTCCACCGGTGTATTTGTATATCCAGAAT  100
      |||||||| ||| |||||| |||||||| |||||||||||||||||||||
seq2  ATCCAGAT-GCGAACTGTG-TTTCCACC-GTGTATTTGTATATCCAGAAT  93

seq1  AAGATTCTTAGGGGGAAGGGCTCTGTCAACAGAAGAGGGGAGAGAGGCAC  150
       ||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TAGATTCTTA-GGGGAAGGGCTCTGTCAACAGAAGA-GGGAGAGAGGCAC  141

seq1  CACTGTGGTCAGCATACGCCAGAAAGACTTCGTGAAGGACTTGGAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGTCAGCATACGCCAGAAAGACTTCGTGAAGGACTTGGAGATAA  191

seq1  AAATGCTCAAAAAAAATCAGAATGTTGGAATATTAGAATGTTTATCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCAAAAAAAATCAGAATGTTGGAATATTAGAATGTTTATCGTTT  241

seq1  ATTTGTCAAGAAACTAATTTGGAATCTCTAAAGGAGCCGCTTTTGTCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAAGAAACTAATTTGGAATCTCTAAAGGAGCCGCTTTTGTCCGG  291

seq1  TGGAGTAGAGAAACTGGGAGATTTCTTTGTTAGTTGAGAGTTTTCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGAGAAACTGGGAGATTTCTTTGTTAGTTGAGAGTTTTCATTTC  341

seq1  TAGACTTGCTGCTCCTTTGCAGAGAGGGCTGCTCTAGGCATCAGCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTGCTGCTCCTTTGCAGAGAGGGCTGCTCTAGGCATCAGCTTCTA  391

seq1  GCTGGTAGCGGATTGAGTAGAATGTTTTTAAGGGCCAGGCCTAGACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAGCGGATTGAGTAGAATGTTTTTAAGGGCCAGGCCTAGACATAA  441

seq1  TGGACAGCAGTGGACTGTAGAGTGGCCCCTTGCAGAAGCCCCCCCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCAGTGGACTGTAGAGTGGCCCCTTGCAGAAGCCCCCCCTGCCT  491

seq1  CTAGAAGGGGAGCAGGGCTCTGATGGACAGTAAGCAATTCTGTCAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGGGAGCAGGGCTCTGATGGACAGTAAGCAATTCTGTCAACACT  541

seq1  AATACAGCAGAATTGTTTACAGGACCGTAAACCTGCTGGGATGTGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAGAATTGTTTACAGGACCGTAAACCTGCTGGGATGTGGTCTC  591

seq1  CACTCCAAAGAGTCCCATTCAGTGGTCAGTCTAGGGTCTGGGAAAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAAGAGTCCCATTCAGTGGTCAGTCTAGGGTCTGGGAAAATCTG  641

seq1  TATTGTTATTGTTACATATTCTTATTAGCACATATTAATTATAAATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTATTGTTACATATTCTTATTAGCACATATTAATTATAAATAATA  691

seq1  ATGGCTTTCATTATATGTTCAAACACCTACTGAGAAGGCTAGGCTAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCATTATATGTTCAAACACCTACTGAGAAGGCTAGGCTAACCC  741

seq1  CATGACAGACTTCACCTTGGTAGTTTAAGAGAGTAGGCCTAAGAGCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGACTTCACCTTGGTAGTTTAAGAGAGTAGGCCTAAGAGCTGGG  791

seq1  CAAGTCCAGGCAAGCCTTGGCAAGTCAGTTACTAGAAACAAACAAGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCAGGCAAGCCTTGGCAAGTCAGTTACTAGAAACAAACAAGCAAA  841

seq1  CAAACAAACAAACAAGCAAACAAGCAAGCAAACAACCTACCCAGGATTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAGCAAACAAGCAAGCAAACAACCTACCCAGGATTCC  891

seq1  TCTGCAGCAGTTTCCACCCATCACACCCTGGTAATGGTTCTGGAATGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAGTTTCCACCCATCACACCCTGGTAATGGTTCTGGAATGCCT  941

seq1  AGAGATAGAGTAAGACAAAGCCCACCTACCCTGGAATTCCCCTAAGTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGAGTAAGACAAAGCCCACCTACCCTGGAATTCCCCTAAGTGCT  991

seq1  TAAAGTCAGGCCAGCAAGCTCACTTGGTGGTCTCTCTATCTTGGTAATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAGGCCAGCAAGCTCACTTGGTGGTCTCTCTATCTTGGTAATAG  1041

seq1  GAGACCCCAGCATGATGGAATTC  1073
      |||||||||||||||||||||||
seq2  GAGACCCCAGCATGATGGAATTC  1064

seq1: chr12_77787660_77788731
seq2: B6Ng01-029C01.g_65_1129

seq1  GAATTCCAGGCCAAAGAGGGCTACATAGTAAAACTAAGTATGTGCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAAAGAGGGCTACATAGTAAAACTAAGTATGTGCTATAT  50

seq1  ATATGTATGCATGTATGTATACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGCATGTATGTATACACACACACACACACACACACACACACAC  100

seq1  ACACACACACACAGGACTTCAGATATCTGAATTCTTGCCCCTAGATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGGACTTCAGATATCTGAATTCTTGCCCCTAGATGTTT  150

seq1  GTTTTACTAACCATTTGAATTTACTATTGCCAGAAATAAGAGAAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTAACCATTTGAATTTACTATTGCCAGAAATAAGAGAAACATTT  200

seq1  GTTGTCTAAATGTGTATGTTCAAAGGACTGTGGACACACTGGGCTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAAATGTGTATGTTCAAAGGACTGTGGACACACTGGGCTCTTGA  250

seq1  TCCTTTAACACAAGAGATCAGCTCCACACTAGGAAATCTGATAAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAACACAAGAGATCAGCTCCACACTAGGAAATCTGATAAAGAAAA  300

seq1  CCCAAGCTACAGTGACAATAGCAACTAGCATTTGTGGCTCACTGACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTACAGTGACAATAGCAACTAGCATTTGTGGCTCACTGACCATG  350

seq1  CGCCAGGCAGGCATCTGGGGCACATTTGTGTCCATGCCTTAGTAGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGCAGGCATCTGGGGCACATTTGTGTCCATGCCTTAGTAGACACC  400

seq1  TCTCTGCCAGGTGGATATCTTTATTTAGTCTCCATTTTAGTGAGGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCAGGTGGATATCTTTATTTAGTCTCCATTTTAGTGAGGAGTGT  450

seq1  TAGGTTTCCGGCCCCGGGGACAAAGGACTGAGGTGCTTATTTTACACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCCGGCCCCGGGGACAAAGGACTGAGGTGCTTATTTTACACACC  500

seq1  ATAGCAAGCCTGACCTCCAGGTTCTCCCAGCATCCCTCAGTCCCTACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGCCTGACCTCCAGGTTCTCCCAGCATCCCTCAGTCCCTACCTG  550

seq1  GCATACTCTGTCCCCAACCTTGAACTTTCCAGCCAAGGGGAAGGGGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTCTGTCCCCAACCTTGAACTTTCCAGCCAAGGGGAAGGGGCTGG  600

seq1  GCCCAGAGGCTCCTCTCTTCATAATCCAGACATTTTTGTGTTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGGCTCCTCTCTTCATAATCCAGACATTTTTGTGTTCTCTCTCT  650

seq1  CTCTTTCTCCCCCTCTCTCTCTCTCTTTCCTTCTCTCTCTTCTCTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCCCCTCTCTCTCTCTCTTTCCTTCTCTCTCTTCTCTCCTCT  700

seq1  CTCCACCAACAGGCCCGTTTCTCTTTCTCTCTCCCTTCCCCATGCCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAACAGGCCCGTTTCTCTTTCTCTCTCCCTTCCCCATGCCCCCT  750

seq1  CCTGTCCCCATGGCGACTTCCCTGGCCTTGGTCCTTAGGGCCAGTGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCCATGGCGACTTCCCTGGCCTTGGTCCTTAGGGCCAGTGAACC  800

seq1  CACCTGCCCGAGAGCAGCTTCCCAATAAACCTGCCTTTAATCTAATCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCCGAGAGCAGCTTCCCAATAAACCTGCCTTTAATCTAATCTAA  850

seq1  TCTGGTTTAAATTGGCTCATTTCACCAGCGGCTCAGAAATAATCCATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTAAATTGGCTCATTTCACCAGCGGCTCAGAAATAATCCATCAA  900

seq1  GAAGGAAAATGAAGCTTTCAAAGTCAGGTAGCCACACAGTGAGTAACCTG  950
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GAAGGAAAATGAAGCTTTC-AAGTCAGGTAGCCACACAGTGAGT-ACCTG  948

seq1  AATCCCAAGTCAGCTAAGACTGTAGCCATTGCATGTACTCTCTCTGCCAT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATCCCAAGTCAGCTAAGACTGTAGCCATTGCATGTACTCTCTCTGCCAT  997

seq1  GCCGCACCGCACGGCAGGAGTTTCTACTAGGAATGAAGTCACCTCAGAAC  1050
      ||||||||||||||||||||||||||||||||||||||||| ||| ||  
seq2  GCCGCACCGCACGGCAGGAGTTTCTACTAGGAATGAAGTCA-CTCTGA--  1044

seq1  GGAAGAATGGAAATATACTATT  1072
       ||||||||| |||||||||||
seq2  CGAAGAATGG-AATATACTATT  1065