BAC Information

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BAC

Clone NameB6Ng01-029E18
Chromosome12 (Build37)
Map Location 78,432,674 - 78,550,123
singlet/doubletdoublet
Overlap geneFut8
Upstream geneZbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029E18.bB6Ng01-029E18.g
ACCDH859539DH859540
length1,1191,162
definitionDH859539|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E18, 5' end.DH859540|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,432,674 - 78,433,806)(78,548,943 - 78,550,123)
sequence
gaattccaggtttagggtggactaatttgctatcaggtagaatcctattg
tgtggttgacttaatatacatttaaagctttcacaaaattgtctttcagc
tttgtaaccaatcaataccacaaggttttttggaactccatgaatatcaa
ttttttgttgttttatatatctttaaaaactcaagtgcattttttcactc
tttccacagcatgtaggatccatgaagcacaggacattcaagcctcccgc
ccgcgtcaccaggaagatctctttgtaagaataaccacaggattgatttc
cagagagattagcctgtctgaagcattatgtgttgaagcaaaagaaacct
attttcttgtgtggctaactagaaccagagtacaatgtttccagttcttt
gagctccaggaagatagaggacagagttgaaactctgaaaatgcgggcat
ggactggttcctggcgttggattatgctcattctttttgcctgggggacc
ttgttattttatataggtggtcatttggttcgagataatgaccaccctga
tcactccagcagagaactctccaagattcttgcaaagcttgaacgcttaa
aacagcaaaatgaagacttgaggcgaatggctgagtctctccggtaggtt
tgaaatactgaaggatttgatgaaatactgggcttggcttttaggtatac
aaactcattccatagttgaaaaattcttaaaatttctacaaactgtctgc
aaaaatctgttttagcagtcctttaaaaagtgtcatgatacatctatata
gtcaatctagataaggtctacatagttgtaaatcatattttgcatatgaa
ttaatatataaaagctgtggtatttatgcttatattttatttacaaatta
tgtttagactatattgaacacaaatgtatatgatttgaattagtgcacat
taacattttatattctatagactacaaagacataatttcttagttaattt
ttaagatgaaaagcaaagttcattgctaatagaacagtgcttcagttgtt
tggaaatcaaagtctcttatttaagtgaaactaagtggacacaaaagcgg
cgcacaccacgtgggcgca
gaattcactactctgaatttcaatgaagtttcagggaatgaacactattt
aatattctgatttcaatatgtacttcctttagctctaacatttagaatag
gggtcagtaattacatagaaagattaagaaatgaagaaagatgtggggta
ggaaatatgaaaataaaacaaagagcttcattaaaaacaagagggagaga
caaaggaagaggagcctctgagctagcagaagggcacactgagccagtct
gctctgtcgccctacgtgcgcaaggaagaacagtctctagggtctggaac
ctttgttccttagtggaaccatgactattaaatcacataaaatttacagt
aaaaggcaaacaggtacaactactgctatatattattgttgtttgagagg
ggaaaatacattcttacccaataactggatgtttgaagccaagcttcttg
gtggcttcttctatttccttttccagccaaggttgtggacgaatcaagta
tttgacaaactgggacacccaccacactgcagggtcaccatggactctta
ggagtcggtctgcaaggtcttctggaacagccagtggtaagtaaggaggc
cgaggatggaggctgtctacaatggggagctcgaccacttgaatgttttt
gtcatttacttcacctaagggaacaccaaaacacatagtgactatactac
acttctcacacatttaccatacaaccaaactcacttggagtactgttacc
ttcatagcaactctaaggaaatatgttttttacgttatagtagaagtcag
gaaatttgcctacagtaccacagcaagagtgacagagctaagcatgcctc
tcaagtgtgaggcctttctaacaactcctaccacccagtcacattatcac
gttatacttcaagttaggacagtaaccagcatccaaagtatttatcagcc
acatggttgagagatatgatgctaccaagttcatgttttctgtttctttc
tttggtatatatataaatatcctggaaattctagcagttattatagtaat
gtctttgcattcttttgtaacgagcactaaagtaataagaatatcaattt
aaatcagtcatcggtatttttgagaaaaatagacaactagaatttttctg
ggctagtagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78432674_78433806
seq2: B6Ng01-029E18.b_45_1163

seq1  GAATTCCAGGTTTAGGGTGGACTAATTTGCTATCAGGTAGAATCCTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTTAGGGTGGACTAATTTGCTATCAGGTAGAATCCTATTG  50

seq1  TGTGGTTGACTTAATATACATTTAAAGCTTTCACAAAATTGTCTTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGACTTAATATACATTTAAAGCTTTCACAAAATTGTCTTTCAGC  100

seq1  TTTGTAACCAATCAATACCACAAGGTTTTTTGGAACTCCATGAATATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACCAATCAATACCACAAGGTTTTTTGGAACTCCATGAATATCAA  150

seq1  TTTTTTGTTGTTTTATATATCTTTAAAAACTCAAGTGCATTTTTTCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTTTATATATCTTTAAAAACTCAAGTGCATTTTTTCACTC  200

seq1  TTTCCACAGCATGTAGGATCCATGAAGCACAGGACATTCAAGCCTCCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGCATGTAGGATCCATGAAGCACAGGACATTCAAGCCTCCCGC  250

seq1  CCGCGTCACCAGGAAGATCTCTTTGTAAGAATAACCACAGGATTGATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGTCACCAGGAAGATCTCTTTGTAAGAATAACCACAGGATTGATTTC  300

seq1  CAGAGAGATTAGCCTGTCTGAAGCATTATGTGTTGAAGCAAAAGAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATTAGCCTGTCTGAAGCATTATGTGTTGAAGCAAAAGAAACCT  350

seq1  ATTTTCTTGTGTGGCTAACTAGAACCAGAGTACAATGTTTCCAGTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGTGTGGCTAACTAGAACCAGAGTACAATGTTTCCAGTTCTTT  400

seq1  GAGCTCCAGGAAGATAGAGGACAGAGTTGAAACTCTGAAAATGCGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGGAAGATAGAGGACAGAGTTGAAACTCTGAAAATGCGGGCAT  450

seq1  GGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACC  500

seq1  TTGTTATTTTATATAGGTGGTCATTTGGTTCGAGATAATGACCACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTTATATAGGTGGTCATTTGGTTCGAGATAATGACCACCCTGA  550

seq1  TCACTCCAGCAGAGAACTCTCCAAGATTCTTGCAAAGCTTGAACGCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAGCAGAGAACTCTCCAAGATTCTTGCAAAGCTTGAACGCTTAA  600

seq1  AACAGCAAAATGAAGACTTGAGGCGAATGGCTGAGTCTCTCCGGTAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAAATGAAGACTTGAGGCGAATGGCTGAGTCTCTCCGGTAGGTT  650

seq1  TGAAATACTGAAGGATTTGATGAAATACTGGGCTTGGCTTTTAGGTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACTGAAGGATTTGATGAAATACTGGGCTTGGCTTTTAGGTATAC  700

seq1  AAACTCATTCCATAGTTGAAAAATTCTTAAAATTTCTACAAACTGTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTCCATAGTTGAAAAATTCTTAAAATTTCTACAAACTGTCTGC  750

seq1  AAAAATCTGTTTTAGCAGTCCTTTAAAAAGTGTCATGATACATCTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGTTTTAGCAGTCCTTTAAAAAGTGTCATGATACATCTATATA  800

seq1  GTCAATCTAGATAAGGTCTACATAGTTGTAAATCATATTTTGCATATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTAGATAAGGTCTACATAGTTGTAAATCATATTTTGCATATGAA  850

seq1  TTAATATATAAAAGCTGTGGTATTTATGCTTATATTTTATTTACAAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATAAAAGCTGTGGTATTTATGCTTATATTTTATTTACAAATTA  900

seq1  TGTTTAGACTATATTGAACACAAATGTTATATGATTTGAATTAGTGCACA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTTAGACTATATTGAACACAAATG-TATATGATTTGAATTAGTGCACA  949

seq1  TTAACATTTTATATTCTATAGACTACAAAGACATAATTTCTTAGTTAAAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAACATTTTATATTCTATAGACTACAAAGACATAATTTCTTAGTT-AAT  998

seq1  TTTTAAGATGAAAAGCAAAAGTTCATTGCTAAATAGAACAGTGCTTCAGT  1050
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TTTTAAGATGAAAAGC-AAAGTTCATTGCT-AATAGAACAGTGCTTCAGT  1046

seq1  TGTTTGGAAAACCAAAGTCTCTTATATAAGTGGAAAACATAAAGTGACAC  1100
      ||||||| ||| ||||||||||||| ||||||  ||||   |||||  ||
seq2  TGTTTGG-AAATCAAAGTCTCTTATTTAAGTG--AAAC--TAAGTG-GAC  1090

seq1  ACACACGCGCGCGCACACACACACGTGGGCGCA  1133
      ||| | ||| ||||||||   ||||||||||||
seq2  ACAAAAGCG-GCGCACAC---CACGTGGGCGCA  1119

seq1: chr12_78548943_78550123
seq2: B6Ng01-029E18.g_65_1226 (reverse)

seq1  AGTCTAACTTAGCCAAGAAAAATATTTTAGTTGTCTATTTTTTTCTACAA  50
      ||||||   ||||| ||||||  ||| ||||||||||||||| ||     
seq2  AGTCTA--CTAGCCCAGAAAA--ATTCTAGTTGTCTATTTTTCTC-----  41

seq1  AAAAATACAGATGACTTGATTTATAATTGTAATTCTTTATTATTTTAGTG  100
      |||||||| |||||| ||||||| |||||  |||| |||||| |||||||
seq2  AAAAATACCGATGAC-TGATTTA-AATTGATATTC-TTATTACTTTAGTG  88

seq1  TCTGTTACAAAAGAAATGCAAGGACCATTAACTATAATAACATGCTAGAA  150
         |||||||||| ||||||| || |||| ||||||||||| ||||||||
seq2  CTCGTTACAAAAG-AATGCAAAGA-CATT-ACTATAATAAC-TGCTAGAA  134

seq1  ATTCCAGGATATTTAATATATAATAACCAAAGAAAGAAACAGAAAACATG  200
       ||||||||||||| |||||||   |||||||||||||||||||||||||
seq2  TTTCCAGGATATTT-ATATATA--TACCAAAGAAAGAAACAGAAAACATG  181

seq1  AACTTGGTAGCATCATATCTCTCAACCATGTGGCTGATAAATACTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTAGCATCATATCTCTCAACCATGTGGCTGATAAATACTTTGGA  231

seq1  TGCTGGTTACTGTCCTAACTTGAAGTATAACGTGATAATGTGACTGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTACTGTCCTAACTTGAAGTATAACGTGATAATGTGACTGGGTG  281

seq1  GTAGGAGTTGTTAGAAAGGCCTCACACTTGAGAGGCATGCTTAGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGTTGTTAGAAAGGCCTCACACTTGAGAGGCATGCTTAGCTCTGT  331

seq1  CACTCTTGCTGTGGTACTGTAGGCAAATTTCCTGACTTCTACTATAACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGCTGTGGTACTGTAGGCAAATTTCCTGACTTCTACTATAACGT  381

seq1  AAAAAACATATTTCCTTAGAGTTGCTATGAAGGTAACAGTACTCCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACATATTTCCTTAGAGTTGCTATGAAGGTAACAGTACTCCAAGTG  431

seq1  AGTTTGGTTGTATGGTAAATGTGTGAGAAGTGTAGTATAGTCACTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTTGTATGGTAAATGTGTGAGAAGTGTAGTATAGTCACTATGTG  481

seq1  TTTTGGTGTTCCCTTAGGTGAAGTAAATGACAAAAACATTCAAGTGGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGTTCCCTTAGGTGAAGTAAATGACAAAAACATTCAAGTGGTCG  531

seq1  AGCTCCCCATTGTAGACAGCCTCCATCCTCGGCCTCCTTACTTACCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCATTGTAGACAGCCTCCATCCTCGGCCTCCTTACTTACCACTG  581

seq1  GCTGTTCCAGAAGACCTTGCAGACCGACTCCTAAGAGTCCATGGTGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCAGAAGACCTTGCAGACCGACTCCTAAGAGTCCATGGTGACCC  631

seq1  TGCAGTGTGGTGGGTGTCCCAGTTTGTCAAATACTTGATTCGTCCACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGGTGGGTGTCCCAGTTTGTCAAATACTTGATTCGTCCACAAC  681

seq1  CTTGGCTGGAAAAGGAAATAGAAGAAGCCACCAAGAAGCTTGGCTTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGGAAAAGGAAATAGAAGAAGCCACCAAGAAGCTTGGCTTCAAA  731

seq1  CATCCAGTTATTGGGTAAGAATGTATTTTCCCCTCTCAAACAACAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTTATTGGGTAAGAATGTATTTTCCCCTCTCAAACAACAATAAT  781

seq1  ATATAGCAGTAGTTGTACCTGTTTGCCTTTTACTGTAAATTTTATGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGTAGTTGTACCTGTTTGCCTTTTACTGTAAATTTTATGTGAT  831

seq1  TTAATAGTCATGGTTCCACTAAGGAACAAAGGTTCCAGACCCTAGAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTCATGGTTCCACTAAGGAACAAAGGTTCCAGACCCTAGAGACT  881

seq1  GTTCTTCCTTGCGCACGTAGGGCGACAGAGCAGACTGGCTCAGTGTGCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCTTGCGCACGTAGGGCGACAGAGCAGACTGGCTCAGTGTGCCC  931

seq1  TTCTGCTAGCTCAGAGGCTCCTCTTCCTTTGTCTCTCCCTCTTGTTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGCTCAGAGGCTCCTCTTCCTTTGTCTCTCCCTCTTGTTTTTA  981

seq1  ATGAAGCTCTTTGTTTTATTTTCATATTTCCTACCCCACATCTTTCTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCTTTGTTTTATTTTCATATTTCCTACCCCACATCTTTCTTCA  1031

seq1  TTTCTTAATCTTTCTATGTAATTACTGACCCCTATTCTAAATGTTAGAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATCTTTCTATGTAATTACTGACCCCTATTCTAAATGTTAGAGC  1081

seq1  TAAAGGAAGTACATATTGAAATCAGAATATTAAATAGTGTTCATTCCCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGTACATATTGAAATCAGAATATTAAATAGTGTTCATTCCCTG  1131

seq1  AAACTTCATTGAAATTCAGAGTAGTGAATTC  1181
      |||||||||||||||||||||||||||||||
seq2  AAACTTCATTGAAATTCAGAGTAGTGAATTC  1162