BAC Information

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BAC

Clone NameB6Ng01-030F08
Chromosome12 (Build37)
Map Location 112,870,030 - 112,950,368
singlet/doubletdoublet
Overlap geneMark3, Ckb, 6720458F09Rik, Bag5
Upstream geneDync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5
Downstream gene2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F08.bB6Ng01-030F08.g
ACCDH860274DH860275
length256862
definitionDH860274|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F08, 5' end.DH860275|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,870,030 - 112,870,285)(112,949,507 - 112,950,368)
sequence
gaattcaatacacactcacccacaagttgacttaaccatccataacttca
gttgtaggggatctaacgccttctgacctccacagacaccaagcatccac
atgaagtacatacttacattcaggcaaaatattcatacacataaatatat
ctttaaaaagaaaaaaaaaaacaggccagccaagaaaggaaaaaatacat
tgggccagcaagatgactcagggttagtgtgtgtgtgtgtgtgtgtgtgt
gtgtgt
tagttccctttcctctgtatccccgacgctaggattgtagggatacacca
gcacaccggtgagcttgctttgttttgttcctgtccagctgttttcagga
gagggagttgacatgtcacatcttccctttcctcaagcaaccttttacac
ctttgacgaaaccttttgtgtattttggtgcatgcccaggtgccagagtt
tggcctccctgcccgcccaccatcatttccttggtgtcctttgactttgg
cttttgaagtggggcttcccatggtcctgaaggtcctcggttaggctaac
ctgggctggccagtgaatcacgagatccatctatcgccgtctccccggca
ctggcttgcctggcttttctgttttacttcatgggcgttggcgcttcgcc
tgcatggatgtctgtgcatcactgtgtgcctggtgcctctgaagacagaa
agggaatcagatgccctgggactggggttacctgtgtggtcatgcactgt
catgtgagtgctggtaatcaaacccaggtcctctagccagcacctttaac
cactgagccctctctccagctccgccccagcttttttttttccacatgtg
ttctggaattccagcttggacacttgatgaaaaattatctccacagcccg
aatgagcccttttaacaagtgtactaagaaggagtgtttagagtgggttc
ttgtcctgcagagactaatacgttatcattcttgctatctttcagtgctt
gtgaaactgaacacagaagtatggatatgggaaaccaacacccctccatt
agtaggcttcaggagatcagcgggaaataaaaggctatagagccgcaagt
ggtcggcttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112870030_112870285
seq2: B6Ng01-030F08.b_41_296

seq1  GAATTCAATACACACTCACCCACAAGTTGACTTAACCATCCATAACTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACACACTCACCCACAAGTTGACTTAACCATCCATAACTTCA  50

seq1  GTTGTAGGGGATCTAACGCCTTCTGACCTCCACAGACACCAAGCATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGGGATCTAACGCCTTCTGACCTCCACAGACACCAAGCATCCAC  100

seq1  ATGAAGTACATACTTACATTCAGGCAAAATATTCATACACATAAATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTACATACTTACATTCAGGCAAAATATTCATACACATAAATATAT  150

seq1  CTTTAAAAAGAAAAAAAAAAACAGGCCAGCCAAGAAAGGAAAAAATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAGAAAAAAAAAAACAGGCCAGCCAAGAAAGGAAAAAATACAT  200

seq1  TGGGCCAGCAAGATGACTCAGGGTTAGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGCAAGATGACTCAGGGTTAGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGTGT  256
      ||||||
seq2  GTGTGT  256

seq1: chr12_112949507_112950368
seq2: B6Ng01-030F08.g_76_937 (reverse)

seq1  CTGAAGCCGACCACTTGCGGCTCTATAGCC-TTTACTTCCCGCTGGATCT  49
      |||||||||||||||||||||||||||||| |||| |||||||| |||||
seq2  CTGAAGCCGACCACTTGCGGCTCTATAGCCTTTTATTTCCCGCT-GATCT  49

seq1  CCTGAAGCCTACTAATGGAGGGGTGTTGGTTTCCCATATCCATACTTCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCCTACTAATGGAGGGGTGTTGGTTTCCCATATCCATACTTCTG  99

seq1  TGTTCAGTTTCACAAGCACTGAAAGATAGCAAGAATGATAACGTATTAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTTTCACAAGCACTGAAAGATAGCAAGAATGATAACGTATTAGT  149

seq1  CTCTGCAGGACAAGAACCCACTCTAAACACTCCTTCTTAGTACACTTGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGGACAAGAACCCACTCTAAACACTCCTTCTTAGTACACTTGTT  199

seq1  AAAAGGGCTCATTCGGGCTGTGGAGATAATTTTTCATCAAGTGTCCAAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCTCATTCGGGCTGTGGAGATAATTTTTCATCAAGTGTCCAAGC  249

seq1  TGGAATTCCAGAACACATGTGGAAAAAAAAAAGCTGGGGCGGAGCTGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCAGAACACATGTGGAAAAAAAAAAGCTGGGGCGGAGCTGGAG  299

seq1  AGAGGGCTCAGTGGTTAAAGGTGCTGGCTAGAGGACCTGGGTTTGATTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTCAGTGGTTAAAGGTGCTGGCTAGAGGACCTGGGTTTGATTAC  349

seq1  CAGCACTCACATGACAGTGCATGACCACACAGGTAACCCCAGTCCCAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCACATGACAGTGCATGACCACACAGGTAACCCCAGTCCCAGGG  399

seq1  CATCTGATTCCCTTTCTGTCTTCAGAGGCACCAGGCACACAGTGATGCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATTCCCTTTCTGTCTTCAGAGGCACCAGGCACACAGTGATGCAC  449

seq1  AGACATCCATGCAGGCGAAGCGCCAACGCCCATGAAGTAAAACAGAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCATGCAGGCGAAGCGCCAACGCCCATGAAGTAAAACAGAAAAG  499

seq1  CCAGGCAAGCCAGTGCCGGGGAGACGGCGATAGATGGATCTCGTGATTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAAGCCAGTGCCGGGGAGACGGCGATAGATGGATCTCGTGATTCA  549

seq1  CTGGCCAGCCCAGGTTAGCCTAACCGAGGACCTTCAGGACCATGGGAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGCCCAGGTTAGCCTAACCGAGGACCTTCAGGACCATGGGAAGC  599

seq1  CCCACTTCAAAAGCCAAAGTCAAAGGACACCAAGGAAATGATGGTGGGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCAAAAGCCAAAGTCAAAGGACACCAAGGAAATGATGGTGGGCG  649

seq1  GGCAGGGAGGCCAAACTCTGGCACCTGGGCATGCACCAAAATACACAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAGGCCAAACTCTGGCACCTGGGCATGCACCAAAATACACAAAA  699

seq1  GGTTTCGTCAAAGGTGTAAAAGGTTGCTTGAGGAAAGGGAAGATGTGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCGTCAAAGGTGTAAAAGGTTGCTTGAGGAAAGGGAAGATGTGACA  749

seq1  TGTCAACTCCCTCTCCTGAAAACAGCTGGACAGGAACAAAACAAAGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTCCCTCTCCTGAAAACAGCTGGACAGGAACAAAACAAAGCAAG  799

seq1  CTCACCGGTGTGCTGGTGTATCCCTACAATCCTAGCGTCGGGGATACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGGTGTGCTGGTGTATCCCTACAATCCTAGCGTCGGGGATACAGA  849

seq1  GGAAAGGGAACTA  862
      |||||||||||||
seq2  GGAAAGGGAACTA  862