BAC Information

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BAC

Clone NameB6Ng01-030L14
Chromosome12 (Build37)
Map Location 103,076,536 - 103,215,169
singlet/doubletdoublet
Overlap geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Upstream gene9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5
Downstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030L14.bB6Ng01-030L14.g
ACCDH860542DH860543
length968970
definitionDH860542|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L14, 5' end.DH860543|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,076,536 - 103,077,506)(103,214,195 - 103,215,169)
sequence
gaattctaatgtgtattatgaaaacctcatgaaaattcactcctagtcat
tcaaaccattttctggtaaaacaaacaaacaaaaaagatccgcatgtgct
ttaggtttctgtatttggctacctacaaattaaacttgtatgcttctgag
ttctggatcctatatgcagaatctatctatgaaaaatagatgggcaaaag
tgggggaggcatggagatcctgggctcacagataagcaggaggggagcca
ggacgctagccacacaggccgtctgtcccttcagtgtgctatctgtatgg
ccaagaccacactggatactcctgcagactctcagagtgagcttgtcagt
gtataaaacccatctatatagaaggtgtcgcatgtagtccatctacagaa
cccatttggatgatgtcagatgtactttacaaagagttttgatttagtca
tgtcttaagctttattaggcacacaggactgagtcatttatcaccagata
attttccaccaaattatgctgtacttaatatgcctaaaatccacactcat
ggtcagaaccaacaccagctccttagtcctgctgaaccgaactctcttct
tgcctcacgctgatcttcactctgctggtcatggcgatcagagacccaca
cacagaagagaagaaatggagaaggggggatgggagaaaaggagacgaga
aatatttgtatcctcaaatactagttatatacctgaaaactacacttact
gtaacaactttgaaatgatggtgtgtatgttgcagggtaaatacttttca
gaccctacctgagagatgaaggccttgagaacttaagatttcccaatgat
tataatacttatgaaaatggctgggatatcattagtatagtgatgtcaca
gtaattaaaatatttacagagaacaaataatgcacactcagtcatggtgt
ctccttctaaggctgcag
gaattcccccagggcagtgacttcgactacctctgcttcatctcgaatat
ataccagatacttgctttctcaagaatgatcgttcacgctgaggtcaact
aatgagaaatacgcaaagacggatctggactagtcctggggctcacagtg
ggagaagtctctctttaatcgttcaggtaaagaaaggctttgaaaggggc
aaaggaatcgtaaaattaaagggtagaaaagtaggcatagatgatgctta
agttctccttgtcacaggggccagagtactggggctggatatggcctgac
ttctggtttcctgaaaagtacgtaagcaaggaaactaggaatgggatctt
gggaaacgtggtgattgtggtagcgccgagagaagttaattctatcaagg
cgtggcatgagcctctcaagggtctttggaattaaggagctacgaaggca
cctgctggcctcgtgttctctgagcccaagatgggaaaggcagagatggg
gaggcttggggagtacggcggtacaaggggaaagagcccaggctggacgc
ggattaacttttagctccagctgatgaaagctcagaggaactagacagga
gggagggcaaggaggaagcataggcgcgccccaacaccccgaggtttcag
cccggggaaaagtcacttctcttccctcttgcggaacgcttgttccagga
accacggagactgtcacaaccgaaacgcgggagcgcgtccgggcgacacc
gggccgacgcgggaacccatccccttgagggcctcctcccacccgaaagc
tcctttccgtctcccgtcctcacctgccaggcaaatctccccctgcaccg
ttcgccgcccttcccaacccctagtgaacgcaggtcggagagcgagatga
gctagcgcgcgcttagcggcggagagcagcctgctagggccccttgtgtg
gtggcgccttctgggcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103076536_103077506
seq2: B6Ng01-030L14.b_45_1012

seq1  GAATTCTAATGTGTATTATGAAAACCTCATGAAAATTCACTCCTAGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGTGTATTATGAAAACCTCATGAAAATTCACTCCTAGTCAT  50

seq1  TCAAACCATTTTCTGGTAAAACAAACAAACAAAAAAGATCCGCATGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATTTTCTGGTAAAACAAACAAACAAAAAAGATCCGCATGTGCT  100

seq1  TTAGGTTTCTGTATTTGGCTACCTACAAATTAAACTTGTATGCTTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTCTGTATTTGGCTACCTACAAATTAAACTTGTATGCTTCTGAG  150

seq1  TTCTGGATCCTATATGCAGAATCTATCTATGAAAAATAGATGGGCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATCCTATATGCAGAATCTATCTATGAAAAATAGATGGGCAAAAG  200

seq1  TGGGGGAGGCATGGAGATCCTGGGCTCACAGATAAGCAGGAGGGGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGCATGGAGATCCTGGGCTCACAGATAAGCAGGAGGGGAGCCA  250

seq1  GGACGCTAGCCACACAGGCCGTCTGTCCCTTCAGTGTGCTATCTGTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTAGCCACACAGGCCGTCTGTCCCTTCAGTGTGCTATCTGTATGG  300

seq1  CCAAGACCACACTGGATACTCCTGCAGACTCTCAGAGTGAGCTTGTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCACACTGGATACTCCTGCAGACTCTCAGAGTGAGCTTGTCAGT  350

seq1  GTATAAAACCCATCTATATAGAAGGTGTCGCATGTAGTCCATCTACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACCCATCTATATAGAAGGTGTCGCATGTAGTCCATCTACAGAA  400

seq1  CCCATTTGGATGATGTCAGATGTACTTTACAAAGAGTTTTGATTTAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGGATGATGTCAGATGTACTTTACAAAGAGTTTTGATTTAGTCA  450

seq1  TGTCTTAAGCTTTATTAGGCACACAGGACTGAGTCATTTATCACCAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAGCTTTATTAGGCACACAGGACTGAGTCATTTATCACCAGATA  500

seq1  ATTTTCCACCAAATTATGCTGTACTTAATATGCCTAAAATCCACACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCACCAAATTATGCTGTACTTAATATGCCTAAAATCCACACTCAT  550

seq1  GGTCAGAACCAACACCAGCTCCTTAGTCCTGCTGAACCGAACTCTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAACCAACACCAGCTCCTTAGTCCTGCTGAACCGAACTCTCTTCT  600

seq1  TGCCTCACGCTGATCTTCACTCTGCTGGTCATGGCGATCAGAGACCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACGCTGATCTTCACTCTGCTGGTCATGGCGATCAGAGACCCACA  650

seq1  CACAGAAGAGAAGAAATGGAGAAGGGGGGATGGGAGAAAAGGAGACGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGAGAAGAAATGGAGAAGGGGGGATGGGAGAAAAGGAGACGAGA  700

seq1  AATATTTGTATCCTCAAATACTAGTTATATACCTGAAAACTACACTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGTATCCTCAAATACTAGTTATATACCTGAAAACTACACTTACT  750

seq1  GTAACAACTTTGAAATGATGGTGTGTATGTTGCAGGGTAAATACTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACTTTGAAATGATGGTGTGTATGTTGCAGGGTAAATACTTTTCA  800

seq1  GA-CCTACCTGAGAGATGAAGGCCTTGAGAACTTAAGATTTCCCAATGAT  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTACCTGAGAGATGAAGGCCTTGAGAACTTAAGATTTCCCAATGAT  850

seq1  TATAATACCTATGAAAAATGCTGGCATATCA-TAGTATAGTGATGTCACA  898
      |||||||| ||||||||  ||||| |||||| ||||||||||||||||||
seq2  TATAATACTTATGAAAATGGCTGGGATATCATTAGTATAGTGATGTCACA  900

seq1  GTAATTAAAATTAATTTACCAGAAGAACAAATAATGCACACTCAGTCATT  948
      |||||||||||  ||||| ||| |||||||||||||||||||||||||| 
seq2  GTAATTAAAAT--ATTTA-CAG-AGAACAAATAATGCACACTCAGTCATG  946

seq1  GTGTCAGCACTCAAAGGCTGCAG  971
      |||||  |  || ||||||||||
seq2  GTGTC-TCCTTCTAAGGCTGCAG  968

seq1: chr12_103214195_103215169
seq2: B6Ng01-030L14.g_71_1040 (reverse)

seq1  TCAGGCCCAAGATGGCGGCCACCACAC-AGGGGCTCCTGCCGGCTGCTCT  49
      |||||||| ||| ||| |||||||||| |||||| |  || |||||||||
seq2  TCAGGCCC-AGAAGGC-GCCACCACACAAGGGGCCCTAGCAGGCTGCTCT  48

seq1  CCGCCGCTGAGCGCGCGCTAGCTCTGCTCGCTCTCCGACCTGCGTTCCAC  99
      |||||||| |||||||||||||||  |||||||||||||||||||| |||
seq2  CCGCCGCTAAGCGCGCGCTAGCTCATCTCGCTCTCCGACCTGCGTT-CAC  97

seq1  TAGGGGTTGGGAAGGGCGGCGGACGGTGCCGGGGGGAGATTGGCCTGGCA  149
      ||||||||||||||||||||| |||||| | |||||||||| ||||||||
seq2  TAGGGGTTGGGAAGGGCGGCGAACGGTG-CAGGGGGAGATTTGCCTGGCA  146

seq1  GGTGAGGACGGGAGACGGAAAGGAGCCTTCGGGTTGGGAGGAGGCCCTCA  199
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  GGTGAGGACGGGAGACGGAAAGGAGCTTTCGGG-TGGGAGGAGGCCCTCA  195

seq1  AGGGGATGGGTTCCCGCGTCGGCCCGGTGTCGCCCGGACGCGCTCCCGCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGGGATGGGTTCCCGCGTCGGCCCGGTGTCGCCCGGACGCGCTCCCGC-  244

seq1  GTTTCGGTTGTGACAGTCTCCGTGGTTCCTGGAACAAGCGTTCCGCAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTTCGGTTGTGACAGTCTCCGTGGTTCCTGGAACAAGCGTTCCGCAAGA  294

seq1  GGGAAGAGAAGTGACTTTTCCCCGGGCTGAAACCTCGGGGTGTTGGGGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAAGTGACTTTTCCCCGGGCTGAAACCTCGGGGTGTTGGGGCG  344

seq1  CGCCTATGCTTCCTCCTTGCCCTCCCTCCTGTCTAGTTCCTCTGAGCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTATGCTTCCTCCTTGCCCTCCCTCCTGTCTAGTTCCTCTGAGCTTT  394

seq1  CATCAGCTGGAGCTAAAAGTTAATCCGCGTCCAGCCTGGGCTCTTTCCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTGGAGCTAAAAGTTAATCCGCGTCCAGCCTGGGCTCTTTCCCC  444

seq1  TTGTACCGCCGTACTCCCCAAGCCTCCCCATCTCTGCCTTTCCCATCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCGCCGTACTCCCCAAGCCTCCCCATCTCTGCCTTTCCCATCTTG  494

seq1  GGCTCAGAGAACACGAGGCCAGCAGGTGCCTTCGTAGCTCCTTAATTCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGAACACGAGGCCAGCAGGTGCCTTCGTAGCTCCTTAATTCCA  544

seq1  AAGACCCTTGAGAGGCTCATGCCACGCCTTGATAGAATTAACTTCTCTCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTTGAGAGGCTCATGCCACGCCTTGATAGAATTAACTTCTCTCG  594

seq1  GCGCTACCACAATCACCACGTTTCCCAAGATCCCATTCCTAGTTTCCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTACCACAATCACCACGTTTCCCAAGATCCCATTCCTAGTTTCCTTG  644

seq1  CTTACGTACTTTTCAGGAAACCAGAAGTCAGGCCATATCCAGCCCCAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTACTTTTCAGGAAACCAGAAGTCAGGCCATATCCAGCCCCAGTA  694

seq1  CTCTGGCCCCTGTGACAAGGAGAACTTAAGCATCATCTATGCCTACTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCCTGTGACAAGGAGAACTTAAGCATCATCTATGCCTACTTTT  744

seq1  CTACCCTTTAATTTTACGATTCCTTTGCCCCTTTCAAAGCCTTTCTTTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTTAATTTTACGATTCCTTTGCCCCTTTCAAAGCCTTTCTTTAC  794

seq1  CTGAACGATTAAAGAGAGACTTCTCCCACTGTGAGCCCCAGGACTAGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGATTAAAGAGAGACTTCTCCCACTGTGAGCCCCAGGACTAGTCC  844

seq1  AGATCCGTCTTTGCGTATTTCTCATTAGTTGACCTCAGCGTGAACGATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGTCTTTGCGTATTTCTCATTAGTTGACCTCAGCGTGAACGATCA  894

seq1  TTCTTGAGAAAGCAAGTATCTGGTATATATTCGAGATGAAGCAGAGGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGAAAGCAAGTATCTGGTATATATTCGAGATGAAGCAGAGGTAG  944

seq1  TCGAAGTCACTGCCCTGGGGGAATTC  975
      ||||||||||||||||||||||||||
seq2  TCGAAGTCACTGCCCTGGGGGAATTC  970