BAC Information

Click to search

BAC

Clone NameB6Ng01-031A04
Chromosome12 (Build37)
Map Location 93,528,234 - 93,529,320
singlet/doubletsinglet
Overlap genenone
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031A04.bB6Ng01-031A04.g
ACCDH860745DH860746
length1,0041,070
definitionDH860745|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A04, 5' end.DH860746|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggtgacagcagatgatggcaaggatgtggagaaagaggagcgc
tcctccattgttggtgggattgcaactggtacaaccactctagaaatcag
tctgacaatttttcagaaaattggacacagtactaccagaagatctagca
actcctctcctgggcatatatatacccagaagatgttccatcttgtaata
aggacacatgctccattatgttcatagcagccttatttataatagccaga
atttggagaaaacccagatgtccctcaacagaggaatggatacagaaaat
gtggtacatttacagcaattaaaaacaatgaattcatgaaattcttaggc
aaatggatacatctggaggatatcatcctgagtgaggtaacccaatcaca
aagaacacacatgatatgcactcactgatatccagatattagcccagaaa
cttagaatatctaagatacaatttgcaaaacatatgaaactcaagaagaa
ggaagaccaaagtgtggatactttgttccttcttagaatggggaacaaaa
tattcatgaaaggagttatagagacaaacttcagagctaagatggaagga
aggaccatacagacactgccccatctggggatccatcccatatacaagca
ccaaacccagaccctattgcatatgccagcaagattttgctgacaggact
ctgatatagctctctcttgtgaggctatgccagtgcctggcaaatacaga
agtagatgctcacagtcatctataggatggaacacagggcctctaattaa
agatctagagaaaatacccaaggagctaaacctataggaggatcaacaat
atgaactaaccagtaacccccagagctgtatctctagttgcatgtgtagc
agaggacagccatcaatgggaggagagctcttggtcttgcgagatcatat
gcccagtacaggggaatgcaaggccagaagcagattgggtgggttgggga
gcaa
gaattcttgattacattttttcacaagaaatcttcagagtactggacata
taaaacaaacattttgctttgttgatttaattacataatgaatgaagtat
aggagaaattaatgcacagctcattggattcatgaccattttaactcaag
tataattcagtatgtcttaatatcattctatccttggataaaatatctta
gtttttccttgtgtttaaaaacatcagtaaaattactgttcctacttttt
cccatgctatgaattcttctgctacatacttgaagtggccacgttgtgaa
ggaaatgttctattatgctccatgtgccatctgtctttctttaaccaatg
gcattgtagcaaaattctaacaagtgcaggcacaaatgtgtttggttggc
tttcactggtcttcttggtcactagctgttttacctacagctccttgtct
tcagtcccatttctctgtgtcacttgtacccaatattctcacaatggaat
gtgttcaatgctacactagctagtaagtaaatgcttctataaaactaagt
tgaacattttataaaagacttggtaaacataaattgttaacaataaataa
aattagggttaaaataaattttaaagtcaaattaggctttgtgcaatcgg
aggaaaagaagttcctagaaggatgtttcactgcaattgctttgtaaaaa
ttttgagttctgattattttcattgagaaaactaggatggagtatcttgc
actatcttggaaggtgtcatagatgtggtttcatgccagaggtttaagct
aaccatgcatggtgttacattcctataatctcaacaggctgagtaggagg
attttgaattttggaccagcctgtgttatgtagcattgtgtagcttgaaa
acccagaacgaaaccaaataatgacaccacaaaagacctgagcatttata
aaagattatcctaggattgttattatcctttgtagtacataaatgctgaa
tttctgcactcttaaattatcctccaccaatattttaaccaattaactaa
acaggtgactggacaaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93528234_93529320
seq2: B6Ng01-031A04.g_68_1137

seq1  GAATTCTTGATTACATTTTTTCACAAGAAATCTTCAGAGTACTGGACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATTACATTTTTTCACAAGAAATCTTCAGAGTACTGGACATA  50

seq1  TAAAACAAACATTTTGCTTTGTTGATTTAATTACATAATGAATGAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAACATTTTGCTTTGTTGATTTAATTACATAATGAATGAAGTAT  100

seq1  AGGAGAAATTAATGCACAGCTCATTGGATTCATGACCATTTTAACTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATTAATGCACAGCTCATTGGATTCATGACCATTTTAACTCAAG  150

seq1  TATAATTCAGTATGTCTTAATATCATTCTATCCTTGGATAAAATATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCAGTATGTCTTAATATCATTCTATCCTTGGATAAAATATCTTA  200

seq1  GTTTTTCCTTGTGTTTAAAAACATCAGTAAAATTACTGTTCCTACTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTTGTGTTTAAAAACATCAGTAAAATTACTGTTCCTACTTTTT  250

seq1  CCCATGCTATGAATTCTTCTGCTACATACTTGAAGTGGCCACGTTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTATGAATTCTTCTGCTACATACTTGAAGTGGCCACGTTGTGAA  300

seq1  GGAAATGTTCTATTATGCTCCATGTGCCATCTGTCTTTCTTTAACCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTTCTATTATGCTCCATGTGCCATCTGTCTTTCTTTAACCAATG  350

seq1  GCATTGTAGCAAAATTCTAACAAGTGCAGGCACAAATGTGTTTGGTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTAGCAAAATTCTAACAAGTGCAGGCACAAATGTGTTTGGTTGGC  400

seq1  TTTCACTGGTCTTCTTGGTCACTAGCTGTTTTACCTACAGCTCCTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGTCTTCTTGGTCACTAGCTGTTTTACCTACAGCTCCTTGTCT  450

seq1  TCAGTCCCATTTCTCTGTGTCACTTGTACCCAATATTCTCACAATGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCATTTCTCTGTGTCACTTGTACCCAATATTCTCACAATGGAAT  500

seq1  GTGTTCAATGCTACACTAGCTAGTAAGTAAATGCTTCTATAAAACTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAATGCTACACTAGCTAGTAAGTAAATGCTTCTATAAAACTAAGT  550

seq1  TGAACATTTTATAAAAGACTTGGTAAACATAAATTGTTAACAATAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTATAAAAGACTTGGTAAACATAAATTGTTAACAATAAATAA  600

seq1  AATTAGGGTTAAAATAAATTTTAAAGTCAAATTAGGCTTTGTGCAATCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGGTTAAAATAAATTTTAAAGTCAAATTAGGCTTTGTGCAATCGG  650

seq1  AGGAAAAGAAGTTCCTAGAAGGATGTTTCACTGCAATTGCTTTGTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAGTTCCTAGAAGGATGTTTCACTGCAATTGCTTTGTAAAAA  700

seq1  TTTTGAGTTCTGATTATTTTCATTGAGAAAACTAGGATGGAGTATCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTCTGATTATTTTCATTGAGAAAACTAGGATGGAGTATCTTGC  750

seq1  ACTATCTTGGAAGGTGTCATAGATGTGGTTTCATGCCAGAGGTTTAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTGGAAGGTGTCATAGATGTGGTTTCATGCCAGAGGTTTAAGCT  800

seq1  AACCATGCATGGTGTTACATTCCTATAATCTCAACAGGCTGAGGTAGGAG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCATGCATGGTGTTACATTCCTATAATCTCAACAGGCTGA-GTAGGAG  849

seq1  GATTTTGAATTTTGGACCAGCCTGTGTTATGTAGCATTGTGTAGGCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GATTTTGAATTTTGGACCAGCCTGTGTTATGTAGCATTGTGTA-GCTTG-  897

seq1  AAAACCCAGAACGAAACCAAATAATGAACACCAACAAAAAGACCTGAGCA  950
      |||||||||||||||||||||||||| ||||||   ||||||||||||||
seq2  AAAACCCAGAACGAAACCAAATAATG-ACACCA--CAAAAGACCTGAGCA  944

seq1  TTTATAAAAGATTAT-CTAGGAATTGTTATTAT-CTATGTAGGTACATAA  998
      ||||||||||||||| ||||| ||||||||||| || |||| |||||| |
seq2  TTTATAAAAGATTATCCTAGG-ATTGTTATTATCCTTTGTA-GTACAT-A  991

seq1  AATGCTGAATTTCTGCACTCCTTTTATAATTATCTTCAACTAATATTTTT  1048
      ||||||||||||||||||||   ||| ||||||| || || |||||||| 
seq2  AATGCTGAATTTCTGCACTC---TTA-AATTATCCTCCACCAATATTTT-  1036

seq1  AAACCAAATTAACTAAACCAGTTAACTGGACCAAAACCA  1087
       |||| ||||||||||| ||| | |||||||  ||||||
seq2  -AACC-AATTAACTAAA-CAGGTGACTGGAC--AAACCA  1070