BAC Information

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BAC

Clone NameB6Ng01-031D09
Chromosome12 (Build37)
Map Location 108,457,315 - 108,583,013
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D09.bB6Ng01-031D09.g
ACCDH860893DH860894
length1,173689
definitionDH860893|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D09, 5' end.DH860894|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,581,830 - 108,583,013)(108,457,315 - 108,458,003)
sequence
gaattctgcttaaatgtgagagatcaaaactagatagccattccccattt
ctttcctggaaactgagaagtcaagagctgaaataatatcaaaagtcagt
gaaaggagaagggtagaaggtcacatggaaggtaggacagcacaggaact
ggggccactgcagagggaggcctcagtcatcctaggggatcgccaaaggc
aagggtgaggccgaggctggcagagacagtaaattcaatgtgtgatttca
gcaaaagcggagaagccaagaaatgggatggaggctcttcttctcggagg
accagagcgtgaagaaggcctgaaagtggactgaggttacagcccagtga
caatgacagagtcttgatcttgttgccggtcacactcagagaggaccagc
ttatggccagccaggtggagcaagggaactcctgtgtgagagtgcaggtt
gtgatagggaactcctgtgtgagagtgcaggttgtgatagggaactcctg
tgtgagagtgcaggttgtgatagggaactcctgtgcgagagtgcaggttg
tgatagggaactcctgtgcgagagtgcaggttgtgatagggaactcctgt
gtgagagtgcaggttgtgatagggaactcctgtgtgagagtgcaggttgt
gatagggaactcctgtgtgagagtgcaggttgtgatagggaactcctgtg
tgagagtgcaggttgtgatagggaactcctgtgtgagagtgcacgttgtg
atagggaactcctgtgtgagagtgcaggttgtgatagggaactcctgtgt
gagagtgcaggttgtgatagggaactcctgtgtgagagtgcagttgtgat
agggagctcctgtgtgagagtgcaggttgtgattagggacagattaattt
actatggactaaccacttgctcaacccaagtctgccaggtactctaagca
caagattaacctcaaggagctcagtgttaacctgttttttgtcattatag
atggacaacagcagctgaaggaactttcttcagcttcagtacaatgaaaa
tacggaatggaatagtgaataattgtgtagactcaaggctggaaagaaga
ggaaaataatggaatacctttaaaatggggaaatcatccccatattacat
atcaactaggctcttctttcttc
gaattccatatgtgtgcagataaccacagatactaagggaaggcataaga
tccaatgctgggaactgaacttgggtcctctggaagtgttctaatctctg
agcatgtctccagccccacaacctggttttatgtatcttaaacatccttg
cccttggtacactataaatggtaaggaacatttgaataacaacagtaaaa
agaatacagagtgatgtgtaccaagtttgatatacagcctgccttaagat
atgcaaatttgatccctcctctccacccatagtatttcagatctcatcca
agaaagaagccacacctgggtgctctgtggcttcagtgctgggaagggtc
ctctggttgctaatcctgacttgcctggtggtgccagcaataagccacag
cctctcccgcatagcaggctccatatgctagcaccctagtctgctaaacc
atcagccagcctaaatttgaaacatttctcaagtgttatacaatgttgta
ataatgtttttacaaaacaaaggctaagttactggaagccattttcaacc
aatcagcgtctcagggaaagaggggcctggggtgggccttggtgacatgg
ggcggacaagtgtgtatgttctttctacagtcaaagcctggctggcaaca
tctgctttgtaaatgaggaaagggtggggagggaggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108581830_108583013
seq2: B6Ng01-031D09.b_45_1217 (reverse)

seq1  GAAGAAAGA----CCTAGTTGATATTGTATATGTGGGCTGATGTACTCTG  46
      |||||||||    ||||||||||||   ||||| ||| |||| | |    
seq2  GAAGAAAGAAGAGCCTAGTTGATATGTAATATG-GGGATGATTTCC----  45

seq1  CCATTTCTTAAAATGCTATTCCATCTTTTTCCTCCTCTCTCCAGACCTTG  96
      |||||  |||||  | ||||||||  |||||||| ||| ||||| |||||
seq2  CCATT--TTAAA--GGTATTCCATTATTTTCCTCTTCTTTCCAG-CCTTG  90

seq1  AGTCTACAC-ATTATTCACTATTCCCATTCCCGTATTTTCATGGTACTGT  145
      ||||||||| ||||||||||||| ||||| |||||||||||| |||||| 
seq2  AGTCTACACAATTATTCACTATT-CCATT-CCGTATTTTCATTGTACTGA  138

seq1  AGCTGAAGGAAGGTTCCTTCAGCTGCTGGTGTCCATCTATAATGACAAAA  195
      ||||||| ||| |||||||||||||||| |||||||||||||||||||||
seq2  AGCTGAA-GAAAGTTCCTTCAGCTGCTGTTGTCCATCTATAATGACAAAA  187

seq1  AACAGGTTAACACTGAGCTCCTTTGAGGTTAATCTTGTGCTTAGAGTAAC  245
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  AACAGGTTAACACTGAGCTCC-TTGAGGTTAATCTTGTGCTTAGAGT-AC  235

seq1  CTGGCAGACTTGGGTTGAGCAAGTTGGTTAGTCCATAGTAAATTAATCTG  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGGCAGACTTGGGTTGAGCAAG-TGGTTAGTCCATAGTAAATTAATCTG  284

seq1  TCCCT-ATCACAACCTGCACTCTCACACAGGAGCTCCCTATCACAACCTG  344
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCCTAATCACAACCTGCACTCTCACACAGGAGCTCCCTATCACAA-CTG  333

seq1  CACTCTCACACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCACACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGT  383

seq1  TCCCTATCACAACCTGCACTCTCACACAGGAGTTCCCTATCACAACCTGC  444
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCCTATCACAACCTGCACTCTCACACAGGAGTTCCCTATCACAACGTGC  433

seq1  ACTCTCACACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGTT  483

seq1  CCCTATCACAACCTGCACTCTCACACAGGAGTTCCCTATCACAACCTGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCACAACCTGCACTCTCACACAGGAGTTCCCTATCACAACCTGCA  533

seq1  CTCTCACACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGTTC  583

seq1  CCTATCACAACCTGCACTCTCGCACAGGAGTTCCCTATCACAACCTGCAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACAACCTGCACTCTCGCACAGGAGTTCCCTATCACAACCTGCAC  633

seq1  TCTCGCACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGTTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCACAGGAGTTCCCTATCACAACCTGCACTCTCACACAGGAGTTCC  683

seq1  CTATCACAACCTGCACTCTCACACAGGAGTTCCCTATCACAACCTGCACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAACCTGCACTCTCACACAGGAGTTCCCTATCACAACCTGCACT  733

seq1  CTCACACAGGAGTTCCCTTGCTCCACCTGGCTGGCCATAAGCTGGTCCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGGAGTTCCCTTGCTCCACCTGGCTGGCCATAAGCTGGTCCTC  783

seq1  TCTGAGTGTGACCGGCAACAAGATCAAGACTCTGTCATTGTCACTGGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGTGACCGGCAACAAGATCAAGACTCTGTCATTGTCACTGGGCT  833

seq1  GTAACCTCAGTCCACTTTCAGGCCTTCTTCACGCTCTGGTCCTCCGAGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTCAGTCCACTTTCAGGCCTTCTTCACGCTCTGGTCCTCCGAGAA  883

seq1  GAAGAGCCTCCATCCCATTTCTTGGCTTCTCCGCTTTTGCTGAAATCACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCTCCATCCCATTTCTTGGCTTCTCCGCTTTTGCTGAAATCACA  933

seq1  CATTGAATTTACTGTCTCTGCCAGCCTCGGCCTCACCCTTGCCTTTGGCG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTTACTGTCTCTGCCAGCCTCGGCCTCACCCTTGCCTTTGGCG  983

seq1  ATCCCCTAGGATGACTGAGGCCTCCCTCTGCAGTGGCCCCAGTTCCTGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAGGATGACTGAGGCCTCCCTCTGCAGTGGCCCCAGTTCCTGTG  1033

seq1  CTGTCCTACCTTCCATGTGACCTTCTACCCTTCTCCTTTCACTGACTTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTACCTTCCATGTGACCTTCTACCCTTCTCCTTTCACTGACTTTT  1083

seq1  GATATTATTTCAGCTCTTGACTTCTCAGTTTCCAGGAAAGAAATGGGGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATTTCAGCTCTTGACTTCTCAGTTTCCAGGAAAGAAATGGGGAA  1133

seq1  TGGCTATCTAGTTTTGATCTCTCACATTTAAGCAGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCTAGTTTTGATCTCTCACATTTAAGCAGAATTC  1173

seq1: chr12_108457315_108458003
seq2: B6Ng01-031D09.g_68_756

seq1  GAATTCCATATGTGTGCAGATAACCACAGATACTAAGGGAAGGCATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTGTGCAGATAACCACAGATACTAAGGGAAGGCATAAGA  50

seq1  TCCAATGCTGGGAACTGAACTTGGGTCCTCTGGAAGTGTTCTAATCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTGGGAACTGAACTTGGGTCCTCTGGAAGTGTTCTAATCTCTG  100

seq1  AGCATGTCTCCAGCCCCACAACCTGGTTTTATGTATCTTAAACATCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCTCCAGCCCCACAACCTGGTTTTATGTATCTTAAACATCCTTG  150

seq1  CCCTTGGTACACTATAAATGGTAAGGAACATTTGAATAACAACAGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTACACTATAAATGGTAAGGAACATTTGAATAACAACAGTAAAA  200

seq1  AGAATACAGAGTGATGTGTACCAAGTTTGATATACAGCCTGCCTTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGAGTGATGTGTACCAAGTTTGATATACAGCCTGCCTTAAGAT  250

seq1  ATGCAAATTTGATCCCTCCTCTCCACCCATAGTATTTCAGATCTCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATTTGATCCCTCCTCTCCACCCATAGTATTTCAGATCTCATCCA  300

seq1  AGAAAGAAGCCACACCTGGGTGCTCTGTGGCTTCAGTGCTGGGAAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGCCACACCTGGGTGCTCTGTGGCTTCAGTGCTGGGAAGGGTC  350

seq1  CTCTGGTTGCTAATCCTGACTTGCCTGGTGGTGCCAGCAATAAGCCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTGCTAATCCTGACTTGCCTGGTGGTGCCAGCAATAAGCCACAG  400

seq1  CCTCTCCCGCATAGCAGGCTCCATATGCTAGCACCCTAGTCTGCTAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCGCATAGCAGGCTCCATATGCTAGCACCCTAGTCTGCTAAACC  450

seq1  ATCAGCCAGCCTAAATTTGAAACATTTCTCAAGTGTTATACAATGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCAGCCTAAATTTGAAACATTTCTCAAGTGTTATACAATGTTGTA  500

seq1  ATAATGTTTTTACAAAACAAAGGCTAAGTTACTGGAAGCCATTTTCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTTTACAAAACAAAGGCTAAGTTACTGGAAGCCATTTTCAACC  550

seq1  AATCAGCGTCTCAGGGAAAGAGGGGCCTGGGGTGGGCCTTGGTGACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCGTCTCAGGGAAAGAGGGGCCTGGGGTGGGCCTTGGTGACATGG  600

seq1  GGCGGACAAGTGTGTATGTTCTTTCTACAGTCAAAGCCTGGCTGGCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGACAAGTGTGTATGTTCTTTCTACAGTCAAAGCCTGGCTGGCAACA  650

seq1  TCTGCTTTGTAAATGAGGAAAGGGTGGGGAGGGAGGGGC  689
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTGTAAATGAGGAAAGGGTGGGGAGGGAGGGGC  689