BAC Information

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BAC

Clone NameB6Ng01-031L12
Chromosome10 (Build37)12 (Build37)
Map Location 110,437,040 - 110,437,873119,462,473 - 119,463,361
singlet/doubletsingletsinglet
Overlap geneZdhhc17
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031L12.bB6Ng01-031L12.g
ACCDH861253DH861254
length1,001900
definitionDH861253|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L12, 5' end.DH861254|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,437,040 - 110,437,873)(119,462,473 - 119,463,361)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaagagttctgaattcatgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccatgacccgcagt
tctggttccggaatgaggaatcttccttgcgccggtgatggttaactccc
gtcccgagttttcttgtcccgggtttttttcgtcccgggttctttcttcc
cgggtttccggcaccaactcttacacgcgttttggccggccaggaagaac
gcaacaaaccagaatcttctgcggcaaaagctttattgcttacatcttca
ggagcaagagagagaggaaaagaatggcaaaaccccgtcccttttaagga
gaattatcctccgcctaggacgtattactccctgattggctgcagcccat
cggcccagttgtcatcacgggaaaggcagaacacatggcgggaaaactgc
ccctgcacgtgtgcagactatgtttaccacttagaacacagctgtcagtg
ccatcttataatggcaaatgtgagggcggctcctcacacataggcatctt
acatacatgttcacacacacatgcaaacatgcatgcacatatatgtatta
tatattatacacatgtacatgtgcaaagttccctagtttcaatttataca
gttgcctaatattttatattttctcaatcacattacattttcagtcaaaa
tttacaagctaacacaatttaagcaaattcttcctagcttattaaaatat
aacaatttgaatttatagccttagcaggcattcaaatgccatttataaac
ttaattaattacattccctattgcacgtcaactttaaatcacaagtgtca
atcgggagcttccaattaaaaatacaaagcaattaagtacagcaacatgt
cagatagtctcttgcaggtcatctcatgggtatgtgaagcagcttatgag
g
gaattcaggttcttgtgtatcaaacaggccatgcagctgggatattgctg
cagcaaaagcaaagatggttcattcaaagaagacacacttccagcgcaga
gatctagcagtgctacacagacctgggaaggcagaaatgtggtggtaagg
ggctcccatgagcaagatggcaaatcagaaaataggcagcagaaattggg
ctgcatgagtggccactgaattgaataggaagaagtctcctaagctggga
ctctataaactttactcctgggaaactcagagcaactggtgctagactac
acacaaggctgaggaactgtccagcaacttggcagaacttctgctttcat
cgcactacagacctcctatttctcctgttttccctctgatttctccattc
ttattcaacacagatctagacggcttggctagagcaatatgataaaagaa
gcaaataatagcaatataagttgagaaaagaagttcaggtccccctgttt
gaagatgctatgagcatatccataaaagactctggagactcaacgtaaac
gtggtagaataaaaatgaacacacaaaaaccagtagctccctctaaaata
ataaaaatatgccaaagaagagaacagaaaaacagttccattcacaatca
cccagaaacaaatgaacaaaaccaaagtcccttggaataaacttaaccga
ggaagtaaaacacctctacagtgaaaaccttgctcactctatagagaaac
tggaggaggctccaggtgctgatcgaacaaatcaataatggggaaatgcc
tctgttacagaaagattttatagactaatgcgcatacctccatcaaattg
caactcaatttttcacagaacagtaaaaagaaaaaaaaatctagactcat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110437040_110437873
seq2: B6Ng01-031L12.b_46_634 (reverse)

seq1  GTGTGAGGAGCCACCCTCACATTTGCCATTACAAGATGGCGCTGACAGCT  50
      |||||||||||| |||||||||||||||||| |||||||| |||||||||
seq2  GTGTGAGGAGCCGCCCTCACATTTGCCATTATAAGATGGCACTGACAGCT  50

seq1  GTGTTCTAAGTAGTGAACATAATCTGCACACGTGCAGGGGCAGTTTTCCC  100
      ||||||||||| || |||||| ||||||||||||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACATAGTCTGCACACGTGCAGGGGCAGTTTTCCC  100

seq1  ACCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCTGATGGGCTGCAG  150
       |||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GCCATGTGTTCTGCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAG  150

seq1  CCAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGG  200

seq1  GACGGGGTTTTGCCATTCTTTTTCTCTCTCTTCTCTTGCTTTCTTGTTCT  250
      |||||||||||||||||||||| ||||||                     
seq2  GACGGGGTTTTGCCATTCTTTTCCTCTCT---------------------  229

seq1  TTTTCTTGCTTTCTTGCTCTCTCTTGCTCTGGCTCTTGCTTCTTGCTCCT  300
                                                        
seq2  --------------------------------------------------  229

seq1  AAAGATGTAAGCAATAAAGCTCTTGCGCTCTGGCTCCTAAAGATGTAAGC  350
                                                        
seq2  --------------------------------------------------  229

seq1  AATAGAGCTCTTGCTCTCTTGCACTCTTGCTCCTGAAGATGTAAGCAATA  400
                             |||||||||||||||||||||||||||
seq2  -----------------------CTCTTGCTCCTGAAGATGTAAGCAATA  256

seq1  AAG-TTTTGCCGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGGCCGGTC  449
      ||| ||||||||||||||||||||||||| || ||||||||||||||| |
seq2  AAGCTTTTGCCGCAGAAGATTCTGGTTTGTTGCGTTCTTCCTGGCCGGCC  306

seq1  GTGAGAACGCGTGTAAGAGTTGGTGCCGAAAACCCGGGAAGAAAGAACCC  499
         | ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ---AAAACGCGTGTAAGAGTTGGTGCCGGAAACCCGGGAAGAAAGAACCC  353

seq1  GGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGGACAAGAAAACT  549
      ||||| |                                           
seq2  GGGACGA-------------------------------------------  360

seq1  CGGGACGGGACGAGAAGACCTGGGACGAGAAAACCCGGGAAGAAAGAACC  599
                                                        
seq2  --------------------------------------------------  360

seq1  CGGGACGAAAAAACCCGGGACAAGAAAACTCGGGACGGGAGTTAACCATC  649
             |||||||||||||||||||||||||||||||||||||||||||
seq2  -------AAAAAACCCGGGACAAGAAAACTCGGGACGGGAGTTAACCATC  403

seq1  ACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCACGG  699
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  ACCGGCGCAAGGAAGATTCCTCATTCCGGAACCAGAACTGCGGGTCATGG  453

seq1  TCATAAAG-GTTCCGGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTG  748
      | || ||| ||||| |||||||||||||||||||||||||||||||| ||
seq2  TAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCATG  503

seq1  AATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTAA  553

seq1  CACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  834
       |||||||||||||||||||||||||||||||||||
seq2  AACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  589

seq1: chr12_119462473_119463361
seq2: B6Ng01-031L12.g_67_953

seq1  GAATTCAGGTTCTTGTGTATCAAACAGGCCATGCAGCTGGGATATTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTTGTGTATCAAACAGGCCATGCAGCTGGGATATTGCTG  50

seq1  CAGCAAAAGCAAAGATGGTTCATTCAAAGAAGACACACTTCCAGCGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGCAAAGATGGTTCATTCAAAGAAGACACACTTCCAGCGCAGA  100

seq1  GATCTAGCAGTGCTACACAGACCTGGGAAGGCAGAAATGTGGTGGTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGCAGTGCTACACAGACCTGGGAAGGCAGAAATGTGGTGGTAAGG  150

seq1  GGCTCCCATGAGCAAGATGGCAAATCAGAAAATAGGCAGCAGAAATTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCATGAGCAAGATGGCAAATCAGAAAATAGGCAGCAGAAATTGGG  200

seq1  CTGCATGAGTGGCCACTGAATTGAATAGGAAGAAGTCTCCTAAGCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAGTGGCCACTGAATTGAATAGGAAGAAGTCTCCTAAGCTGGGA  250

seq1  CTCTATAAACTTTACTCCTGGGAAACTCAGAGCAACTGGTGCTAGACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAACTTTACTCCTGGGAAACTCAGAGCAACTGGTGCTAGACTAC  300

seq1  ACACAAGGCTGAGGAACTGTCCAGCAACTTGGCAGAACTTCTGCTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGCTGAGGAACTGTCCAGCAACTTGGCAGAACTTCTGCTTTCAT  350

seq1  CGCACTACAGACCTCCTATTTCTCCTGTTTTCCCTCTGATTTCTCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTACAGACCTCCTATTTCTCCTGTTTTCCCTCTGATTTCTCCATTC  400

seq1  TTATTCAACACAGATCTAGACGGCTTGGCTAGAGCAATATGATAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAACACAGATCTAGACGGCTTGGCTAGAGCAATATGATAAAAGAA  450

seq1  GCAAATAATAGCAATATAAGTTGAGAAAAGAAGTTCAGGTCCCCCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAATAGCAATATAAGTTGAGAAAAGAAGTTCAGGTCCCCCTGTTT  500

seq1  GAAGATGCTATGAGCATATCCATAAAAGACTCTGGAGACTCAACGTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCTATGAGCATATCCATAAAAGACTCTGGAGACTCAACGTAAAC  550

seq1  GTGGTAGAATAAAAATGAACACACAAAAACCAGTAGCTCCCTCTAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGAATAAAAATGAACACACAAAAACCAGTAGCTCCCTCTAAAATA  600

seq1  ATAAAAATATGCCAAAGAAGAGAACAGAAAAACAGTTCCATTCACAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATATGCCAAAGAAGAGAACAGAAAAACAGTTCCATTCACAATCA  650

seq1  CCCAGAAACAAATGAACAAAACCAAAGTCCCTTGGAATAAACTTAACCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACAAATGAACAAAACCAAAGTCCCTTGGAATAAACTTAACCGA  700

seq1  GGAAGTAAAACACCTCTACAGTGAAAACCTTGCTCACTCTATAGAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAAAACACCTCTACAGTGAAAACCTTGCTCACTCTATAGAGAAAC  750

seq1  TGGAGGAGGCTCCAGGTGCTGATCGAACAAATCAATAATGGGGAAATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGCTCCAGGTGCTGATCGAACAAATCAATAATGGGGAAATGCC  800

seq1  TCTGTTACAGAAAGATTTTATAGACTAATGCGCATACCTCCATCAAAATT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGTTACAGAAAGATTTTATAGACTAATGCGCATACCTCCATC-AAATT  849

seq1  GCAACTCAATTTTTCACAGAACAGTAAAAAAGAAAAAAA  889
      ||||||||||||||||||||||||| |||||||||||||
seq2  GCAACTCAATTTTTCACAGAACAGT-AAAAAGAAAAAAA  887