BAC Information

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BAC

Clone NameB6Ng01-032C09
Chromosome5 (Build37)12 (Build37)
Map Location 15,645,852 - 15,645,92649,316,891 - 49,317,884
singlet/doubletsingletsinglet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C09.bB6Ng01-032C09.g
ACCDH861567DH861568
length662996
definitionDH861567|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C09, 5' end.DH861568|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,645,852 - 15,645,926)(49,316,891 - 49,317,884)
sequence
gaattcttttatttagttctgtaccccatttttaataaggttatttggtt
ctctggaatctaacttcttgaattctttgtatatactgaatattagccct
ctatcaggtatagggttggtaaagatttttttcccaatctgttggttgtt
ctgtcttattggcagtttcctttgccttatagaagctttgcaattttatg
aagtcccatttgtcaattcttgatcttagaggataagctattggtgttct
gttctggaaaatttcccctgtgcccatgtgcttaagactcccactttctt
tcttaatagtctcagtgtatccggttttatgtggagttctttgatccaca
aagacttgagctttgtacaaggagataagaatatttcaattcgcattctt
ctacatgataaccgcccgttgtgccagcaccatttgttgaagatgctgtc
ttttttccactggatgattttaactcctttgtcaaagatcaagtgaccat
aggtgtgtggggtcatctctgggtcttcaattatattccattgatctacc
tgcctgccactgtaccaataccaatgcagtttttatcacgattgctctgt
agtacagcgtgaggtcaggaatggtgattcccccagaagttcttttttgt
tgagaatagttt
gaattcaacatctctgttataatattgattatgaaaatttcagtatgtac
ctatttcctaatccttttcatgatgaatttgagtgcaatggggtagtaat
gataataataataataataataataataataataataatacatataccat
taagatcttcataattacataatattcttgcaattttaggatatgtttta
atcaaacattgaagtatgcattttccaaaatctttgttgaatttctatga
cagtttatagtatttttaaaagaaatctgtcccttataggaaagatatgg
attaccacttctatgcctgtcatttgttatacaatgctgtgcctgatatg
cactatttgtggcataaataacctgtcacaaagtccaaaagcaggatata
tttaggcagaaagtatccttttgtaaattattttctcgacctatccaata
acatcacctattataaaatctccctaatatcagagtaattattttgaagt
catttagttttcctcatttttcactacaaaagttaatctaatacctcagg
taaggttaaacatcttttcattctcttcggatcacccaagcttatgtcca
aatattctttccaaacatttctctactctttcactgatgaatcaatgctc
catttagccttctttttttcagaattcttttcttaatacacatttactga
atctgtcaatacttatgaactaataggaaatccatatcacgtcataaaaa
tactatacagttctgatatctcatcactatcctttatttaccagcagtaa
cactcttaaaatcttttcaaatctttttttctataaatgatcctaaactg
ttcactattttctttgctagaataaatttcctacacatgtgaccttaact
gtcttacttctgtttatttcattatctgggatttccatttaaccatttca
tcttctatcttatttttagacttcattctgtttcttttatcatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15645852_15645926
seq2: B6Ng01-032C09.b_624_697 (reverse)

seq1  AAACTATTCTCAACAATAAAAGAACCTCTGGGGGAATCACCATCCCTGAC  50
      |||||||||||||||| |||||||| ||||||||||||||||| ||||||
seq2  AAACTATTCTCAACAA-AAAAGAACTTCTGGGGGAATCACCATTCCTGAC  49

seq1  CTCAAGCTTTACTATAGAGCAATTG  75
      |||| ||| ||||| |||||||| |
seq2  CTCACGCTGTACTACAGAGCAATCG  74

seq1: chr12_49316891_49317884
seq2: B6Ng01-032C09.g_69_1064

seq1  GAATTCAACATCTCTGTTATAATATTGATTATGAAAATTTCAGTATGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCTCTGTTATAATATTGATTATGAAAATTTCAGTATGTAC  50

seq1  CTATTTCCTAATCCTTTTCATGATGAATTTGAGTGCAATGGGGTAGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCTAATCCTTTTCATGATGAATTTGAGTGCAATGGGGTAGTAAT  100

seq1  GATAATAATAATAATAATAATAATAATAATAATAATAATACATATACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAATAATAATAATAATAATAATAATAATAATAATACATATACCAT  150

seq1  TAAGATCTTCATAATTACATAATATTCTTGCAATTTTAGGATATGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTTCATAATTACATAATATTCTTGCAATTTTAGGATATGTTTTA  200

seq1  ATCAAACATTGAAGTATGCATTTTCCAAAATCTTTGTTGAATTTCTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACATTGAAGTATGCATTTTCCAAAATCTTTGTTGAATTTCTATGA  250

seq1  CAGTTTATAGTATTTTTAAAAGAAATCTGTCCCTTATAGGAAAGATATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATAGTATTTTTAAAAGAAATCTGTCCCTTATAGGAAAGATATGG  300

seq1  ATTACCACTTCTATGCCTGTCATTTGTTATACAATGCTGTGCCTGATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACTTCTATGCCTGTCATTTGTTATACAATGCTGTGCCTGATATG  350

seq1  CACTATTTGTGGCATAAATAACCTGTCACAAAGTCCAAAAGCAGGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTGTGGCATAAATAACCTGTCACAAAGTCCAAAAGCAGGATATA  400

seq1  TTTAGGCAGAAAGTATCCTTTTGTAAATTATTTTCTCGACCTATCCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCAGAAAGTATCCTTTTGTAAATTATTTTCTCGACCTATCCAATA  450

seq1  ACATCACCTATTATAAAATCTCCCTAATATCAGAGTAATTATTTTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCTATTATAAAATCTCCCTAATATCAGAGTAATTATTTTGAAGT  500

seq1  CATTTAGTTTTCCTCATTTTTCACTACAAAAGTTAATCTAATACCTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTTTCCTCATTTTTCACTACAAAAGTTAATCTAATACCTCAGG  550

seq1  TAAGGTTAAACATCTTTTCATTCTCTTCGGATCACCCAAGCTTATGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTAAACATCTTTTCATTCTCTTCGGATCACCCAAGCTTATGTCCA  600

seq1  AATATTCTTTCCAAACA-TTCTCTACTCTTTCACTGATGAATCAATGCTC  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATATTCTTTCCAAACATTTCTCTACTCTTTCACTGATGAATCAATGCTC  650

seq1  CATTTAGCCTTCTTTTTTTCAGAATTCTTTTCTTAATACACATTTACTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCCTTCTTTTTTTCAGAATTCTTTTCTTAATACACATTTACTGA  700

seq1  ATCTGTCAATACTTATGAACTAATAGGAAATCCATATCACGTCAT-AAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTGTCAATACTTATGAACTAATAGGAAATCCATATCACGTCATAAAAA  750

seq1  TACTATACAGTTCTGATATCTCATCACTATCC-TTATTTACCAGCAGTAA  797
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTATACAGTTCTGATATCTCATCACTATCCTTTATTTACCAGCAGTAA  800

seq1  CACTCTTAAAATCTTTTCAAATC-TTTTTTCTATAAATGATCCT-AACTG  845
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  CACTCTTAAAATCTTTTCAAATCTTTTTTTCTATAAATGATCCTAAACTG  850

seq1  TTCACTATTTTCTTTGCTAGAATAAA-TTCCTACACATGTGACCTTAACT  894
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCACTATTTTCTTTGCTAGAATAAATTTCCTACACATGTGACCTTAACT  900

seq1  GTCTTACTTCTGTTTATTTCATTATCT-GGATTTCCATCTTAACAATTTC  943
      ||||||||||||||||||||||||||| |||||||||| ||||| |||||
seq2  GTCTTACTTCTGTTTATTTCATTATCTGGGATTTCCAT-TTAACCATTTC  949

seq1  ATCTTCTATTCTTATTTTTAAGACTTTCATTCTGTTTCTTTTTATCAATT  993
      |||||||| |||||||||| |||| ||||||||||||| |||||||| ||
seq2  ATCTTCTA-TCTTATTTTT-AGAC-TTCATTCTGTTTC-TTTTATCATTT  995

seq1  C  994
      |
seq2  C  996