BAC Information

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BAC

Clone NameB6Ng01-032C24
Chromosome16 (Build37)12 (Build37)
Map Location 90,123,780 - 90,123,94015,923,792 - 15,924,487
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496
Downstream geneLOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C24.bB6Ng01-032C24.g
ACCDH861597DH861598
length327697
definitionDH861597|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C24, 5' end.DH861598|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,123,780 - 90,123,940)(15,923,792 - 15,924,487)
sequence
gaattctttgttcagctctgtaccccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtatatattggatattagtcccc
atcagatttaggattggtaaaaatcctttcccccccccacaggatatgac
caagtttatttatatatattttattttatatgtgtacactgtagctgttt
tcaggcacactccagaagagtgcatcagattccattacagatgtttgtga
gccacgatgaggttgctgggaattgaactctggacctgtggaagaacagt
cagtgctcttacaggctgagccatctc
gaattccatggtaaacagagagaatttacaggctacctagacatcccttt
cagaaatgatctagacatattttatttctgtttttttttttcatttgttc
agataccatatgaagaccatgaaaggaaacggaaaaatacaagaataaga
taaggaatggaaggagaggcagaaaccaggagtttgaaacactgagagcc
agtatgagactttgctctgtctctgtccttgagcaatgaatgatacagca
gaggccctgactcaaaccccatggaaaaatgaacaaaggaataaggagaa
agaacctaagtaccaaagcctggtgttacttctgccatagtatgaaactg
ttagagtatcccagggctaagatttctgaccagcccctacacccatctct
ataaccctctgggccactacatgatgactgctggattgtgggaaggaggt
ggaaccttccactttgttctacagttaggtagttaggtaaggttgtatat
gtttggtaatgtccttgcttttgtaggtccctgcccctctacctgcactt
tactggtgacagctgtgctccgtgattcagaacaacagaacaagccacct
ttcctctcactgtgaaccagtttgagggggcacaattgagaatggaggga
tgctgagatctactgaggtctagaagctaagctgttacacatgccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90123780_90123940
seq2: B6Ng01-032C24.b_213_370 (reverse)

seq1  GAGATGGCTCAGCGGTTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGA  50
      |||||||||||||  | ||||||||||||||| ||||||| |||||| ||
seq2  GAGATGGCTCAGC-CTGTAAGAGCACTGACTGTTCTTCCACAGGTCCAGA  49

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGAT  100
      |||||| ||||||||||| ||| ||||||||||| |||||||||||| ||
seq2  GTTCAATTCCCAGCAACCTCATCGTGGCTCACAAACATCTGTAATGGAAT  99

seq1  CTGATGCCCTCTTCTG--GTGTGTCTGAAGACAGCTACAGTGTACTTACA  148
      ||||||| ||||||||  ||||| ||||| |||||||||||||||  |||
seq2  CTGATGCACTCTTCTGGAGTGTGCCTGAAAACAGCTACAGTGTAC--ACA  147

seq1  TACATAAAATAAA  161
      |  ||||||||||
seq2  T--ATAAAATAAA  158

seq1: chr12_15923792_15924487
seq2: B6Ng01-032C24.g_67_763

seq1  GAATTCCATGGTAAACAGAGAGAATTTACAGGCTACCTAGACATCCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTAAACAGAGAGAATTTACAGGCTACCTAGACATCCCTTT  50

seq1  CAGAAATGATCTAGACATATTTTATTTCTGTTTTTTTTTTTCATTTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGATCTAGACATATTTTATTTCTGTTTTTTTTTTTCATTTGTTC  100

seq1  AGATACCATATGAAGACCATGAAAGGAAACGGAAAAATACAAGAATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCATATGAAGACCATGAAAGGAAACGGAAAAATACAAGAATAAGA  150

seq1  TAAGGAATGGAAGGAGAGGCAGAAACCAGGAGTTTGAAACACTGAGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATGGAAGGAGAGGCAGAAACCAGGAGTTTGAAACACTGAGAGCC  200

seq1  AGTATGAGACTTTGCTCTGTCTCTGTCCTTGAGCAATGAATGATACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGACTTTGCTCTGTCTCTGTCCTTGAGCAATGAATGATACAGCA  250

seq1  GAGGCCCTGACTCAAACCCCATGGAAAAATGAACAAAGGAATAAGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGACTCAAACCCCATGGAAAAATGAACAAAGGAATAAGGAGAA  300

seq1  AGAACCTAAGTACCAAAGCCTGGTGTTACTTCTGCCATAGTATGAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTAAGTACCAAAGCCTGGTGTTACTTCTGCCATAGTATGAAACTG  350

seq1  TTAGAGTATCCCAGGGCTAAGATTTCTGACCAGCCCCTACACCCATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTATCCCAGGGCTAAGATTTCTGACCAGCCCCTACACCCATCTCT  400

seq1  ATAACCCTCTGGGCCACTACATGATGACTGCTGGATTGTGGGAAGGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTCTGGGCCACTACATGATGACTGCTGGATTGTGGGAAGGAGGT  450

seq1  GGAACCTTCCACTTTGTTCTACAGTTAGGTAGTTAGGTAAGGTTGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTCCACTTTGTTCTACAGTTAGGTAGTTAGGTAAGGTTGTATAT  500

seq1  GTTTGGTAATGTCCTTGCTTTTGTAGGTCCCTGCCCCTCTACCTGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTAATGTCCTTGCTTTTGTAGGTCCCTGCCCCTCTACCTGCACTT  550

seq1  TACTGGTGACAGCTGTGCTCCGTGATTCAGAACAACAGAACAAGCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGACAGCTGTGCTCCGTGATTCAGAACAACAGAACAAGCCACCT  600

seq1  TTCCTCTCACTGTGAACCAG-TTGA-GGGGCACAGTTGAGAATGGAGGGA  648
      |||||||||||||||||||| |||| |||||||| |||||||||||||||
seq2  TTCCTCTCACTGTGAACCAGTTTGAGGGGGCACAATTGAGAATGGAGGGA  650

seq1  TGCTGAGATCCACTGAGGTCTAGTAAGCTAAGCTGTTACACATGCCAA  696
      |||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TGCTGAGATCTACTGAGGTCTAG-AAGCTAAGCTGTTACACATGCCAA  697