BAC Information

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BAC

Clone NameB6Ng01-032F16
Chromosome12 (Build37)
Map Location 5,454,799 - 5,566,097
singlet/doubletdoublet
Overlap genenone
Upstream geneNcoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032F16.bB6Ng01-032F16.g
ACCDH861717DH861718
length1,041747
definitionDH861717|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F16, 5' end.DH861718|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,565,050 - 5,566,097)(5,454,799 - 5,455,771)
sequence
gaattcaacaaacatcctgtaaaaagcaacatttttggggctagagacat
ggcccagaagatgaaaatgcctgctgcttttgcagagaaccaagaatcag
ttctcagcacccattaggtaacatataatcacctgtaactactatttctg
tggatccagcaccctcttctgagctctgaagccaccaggcacgcatgtag
tgcacacagagacaatcataaaaacgtgaaaaggtcattttgttttgcta
ttttaaagacacatgttatacaactgcaggacatagctttttttctgttg
gagagtatcataatcttcaaaccataattcaagatttttcctttaaattc
atgtttctcaaagtagagtcttctcagcagcatggcacagacttgctaat
aatgctgattaacaagccctgcatcccctgaatcaaaatgcttaatgagc
tcagaggtgacaatctcagtgtttaatcagcctttctgtggattccactg
catacaccaaagtttgagaacgtcctccttaaggaattgtgactcgtcaa
attgtcacacgtgtttcctccttgatatgacctctactgacttacttagt
ccgtcatgcatcctcaacaaggaacaactgaaagaatggtacagaggcag
acaagagaggccattgtcttccccaatttggaagaaattaagagtgagtg
gtatccataaagaatgaccaaatgaccagaggtcatcagattatgtgcca
gtctgtcttgcagatactggcactgcaacagagtctgataaataaagagc
aaaaaaaacaatggatctctgggaactttagttgcacatggaaaggcaga
ggaacctcatgcatgttttgggaacaaacaaataaacatgaagtcctgca
tagacaagttgggtgggagggacaaaagacgagtaaaataagctcataga
ccccagccattcctttcaggcacctctgagcctgagctattttctgcatt
cagttcgagtagactctaaattgaaagcacgcaggctccca
gaattcaatggccacctgtcaagggacacatcatgatggacaatacagac
cctcactatttgctttgtctctgcccttcagaccctgtgtatcattctga
ggccccaggttgtgatggagattaatattggagagtaggagagatcacca
ccaaaaatgtttttaaacatattctgctcttgttcagcagcaagcttcag
gcaggctacagtgccacgtgtagccctgccttctctgtgtcccctaagat
gctgccatgaccactagggtttcctgatagaggtttccctcttagggtac
agagaagggattccattcacctccctgaatttctcctgaagctgtgagct
gtataaatggcaaggcttcccttgccataaacaaacaaacaaacaaacaa
acaaacaaacaaacaaaagagtccaaaacaagtagacaaacagacaagat
agaactctgatgtgaggttctcatctattttcatgttgttctgcagaatg
ttcaataaaaatggctttaaggttttaatacttgaaacattaagatacct
ctcccccacaggaagaaaaacactttattgagtacaatggggaagggagg
agggctgggaaggagcggaggtatcactgccatggtttctcgtatagagc
tgtgactgaggggtaaaatcatggacaaaaaattattttatatgataaca
gaaggagatgaaagaagaatgcaggagctgggagggtggggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5565050_5566097
seq2: B6Ng01-032F16.b_45_1085 (reverse)

seq1  TGGGAAGCCTGCGTGGCTTACGAATTTAAGAGTCTACCTCTGAACTGAAT  50
      |||| ||||||||| |||| | ||||| |||||||| ||| |||||||||
seq2  TGGG-AGCCTGCGT-GCTTTC-AATTT-AGAGTCTA-CTC-GAACTGAAT  44

seq1  GCAGAAAATTAGCTTCAGGCTCAGAGGTGCCCTGAAAGGAATGGCTGGGG  100
      |||||||| |||| ||||||||||||||| |||||||||||||||| |||
seq2  GCAGAAAA-TAGC-TCAGGCTCAGAGGTG-CCTGAAAGGAATGGCT-GGG  90

seq1  GTCTATGAGCTTGTTTTACTCTGTCTTTTGTCCCTCCCACCCAAC-TGTC  149
      |||||||||||| |||||||| ||||||||||||||||||||||| ||||
seq2  GTCTATGAGCTTATTTTACTC-GTCTTTTGTCCCTCCCACCCAACTTGTC  139

seq1  TATGCAGGACTTCATGTTTATTTGTTTGTTCCC-AAACATGCATGAGGTT  198
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATGCAGGACTTCATGTTTATTTGTTTGTTCCCAAAACATGCATGAGGTT  189

seq1  CCTCTGCCTTTCCATGTGCAACTAAAGTTCCCAGAGATCCATTGTTTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTTCCATGTGCAACTAAAGTTCCCAGAGATCCATTGTTTTTT  239

seq1  TTGCTCTTTATTTATCAGACTCTGTTGCAGTGCCAGTATCTGCAAGACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTATTTATCAGACTCTGTTGCAGTGCCAGTATCTGCAAGACAG  289

seq1  ACTGGCACATAATCTGATGACCTCTGGTCATTTGGTCATTCTTTATGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCACATAATCTGATGACCTCTGGTCATTTGGTCATTCTTTATGGAT  339

seq1  ACCACTCACTCTTAATTTCTTCCAAATTGGGGAAGACAATGGCCTCTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCACTCTTAATTTCTTCCAAATTGGGGAAGACAATGGCCTCTCTT  389

seq1  GTCTGCCTCTGTACCATTC-TTCAGTTGTTCCTTGTTGAGGATGCATGAC  447
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCTGCCTCTGTACCATTCTTTCAGTTGTTCCTTGTTGAGGATGCATGAC  439

seq1  GGACTAAGTAAGTCAGTAGAGGTCATATCAAGGAGGAAACACGTGTGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAGTAAGTCAGTAGAGGTCATATCAAGGAGGAAACACGTGTGACA  489

seq1  ATTTGACGAGTCACAATTCCTTAAGGAGGACGTTCTCAAACTTTGGTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACGAGTCACAATTCCTTAAGGAGGACGTTCTCAAACTTTGGTGTA  539

seq1  TGCAGTGGAATCCACAGAAAGGCTGATTAAACACTGAGATTGTCACCTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGAATCCACAGAAAGGCTGATTAAACACTGAGATTGTCACCTCT  589

seq1  GAGCTCATTAAGCATTTTGATTCAGGGGATGCAGGGCTTGTTAATCAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATTAAGCATTTTGATTCAGGGGATGCAGGGCTTGTTAATCAGCA  639

seq1  TTATTAGCAAGTCTGTGCCATGCTGCTGAGAAGACTCTACTTTGAGAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCAAGTCTGTGCCATGCTGCTGAGAAGACTCTACTTTGAGAAAC  689

seq1  ATGAATTTAAAGGAAAAATCTTGAATTATGGTTTGAAGATTATGATACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTAAAGGAAAAATCTTGAATTATGGTTTGAAGATTATGATACTC  739

seq1  TCCAACAGAAAAAAAGCTATGTCCTGCAGTTGTATAACATGTGTCTTTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGAAAAAAAGCTATGTCCTGCAGTTGTATAACATGTGTCTTTAA  789

seq1  AATAGCAAAACAAAATGACCTTTTCACGTTTTTATGATTGTCTCTGTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAAACAAAATGACCTTTTCACGTTTTTATGATTGTCTCTGTGTG  839

seq1  CACTACATGCGTGCCTGGTGGCTTCAGAGCTCAGAAGAGGGTGCTGGATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATGCGTGCCTGGTGGCTTCAGAGCTCAGAAGAGGGTGCTGGATC  889

seq1  CACAGAAATAGTAGTTACAGGTGATTATATGTTACCTAATGGGTGCTGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAATAGTAGTTACAGGTGATTATATGTTACCTAATGGGTGCTGAG  939

seq1  AACTGATTCTTGGTTCTCTGCAAAAGCAGCAGGCATTTTCATCTTCTGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTCTTGGTTCTCTGCAAAAGCAGCAGGCATTTTCATCTTCTGGG  989

seq1  CCATGTCTCTAGCCCC-AGCATGTTGCTTTTTACAGGATGTTTGTTGAAT  1046
      |||||||||||||||| |  ||||||||||||||||||||||||||||||
seq2  CCATGTCTCTAGCCCCAAAAATGTTGCTTTTTACAGGATGTTTGTTGAAT  1039

seq1  TC  1048
      ||
seq2  TC  1041

seq1: chr12_5454799_5455771
seq2: B6Ng01-032F16.g_71_817

seq1  GAATTCAATGGCCACCTGTCAAGGGACACATCATGATGGACAATACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCCACCTGTCAAGGGACACATCATGATGGACAATACAGAC  50

seq1  CCTCACTATTTGCTTTGTCTCTGCCCTTCAGACCCTGTGTATCATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTATTTGCTTTGTCTCTGCCCTTCAGACCCTGTGTATCATTCTGA  100

seq1  GGCCCCAGGTTGTGATGGAGATTAATATTGGAGAGTAGGAGAGATCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGGTTGTGATGGAGATTAATATTGGAGAGTAGGAGAGATCACCA  150

seq1  CCAAAAATGTTTTTAAACATATTCTGCTCTTGTTCAGCAGCAAGCTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATGTTTTTAAACATATTCTGCTCTTGTTCAGCAGCAAGCTTCAG  200

seq1  GCAGGCTACAGTGCCACGTGTAGCCCTGCCTTCTCTGTGTCCCCTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTACAGTGCCACGTGTAGCCCTGCCTTCTCTGTGTCCCCTAAGAT  250

seq1  GCTGCCATGACCACTAGGGTTTCCTGATAGAGGTTTCCCTCTTAGGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGACCACTAGGGTTTCCTGATAGAGGTTTCCCTCTTAGGGTAC  300

seq1  AGAGAAGGGATTCCATTCACCTCCCTGAATTTCTCCTGAAGCTGTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGATTCCATTCACCTCCCTGAATTTCTCCTGAAGCTGTGAGCT  350

seq1  GTATAAATGGCAAGGCTTCCCTTGCCATAAACAAACAAACAAACAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATGGCAAGGCTTCCCTTGCCATAAACAAACAAACAAACAAACAA  400

seq1  ACAAACAAACAAACAAAAGAGTCCAAAACAAGTAGACAAACAGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAAGAGTCCAAAACAAGTAGACAAACAGACAAGAT  450

seq1  AGAACTCTGATGTGAGGTTCTCATCTATTTTCATGTTGTTCTGCAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGATGTGAGGTTCTCATCTATTTTCATGTTGTTCTGCAGAATG  500

seq1  TTCAATAAAAATGGCTTTAAGGTTTTAATACTTGAAACATTAAGATACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAAAATGGCTTTAAGGTTTTAATACTTGAAACATTAAGATACCT  550

seq1  CTCCCCCACAGGAAGAAAAACACTTTATTGAGTACAATGGGGAAGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACAGGAAGAAAAACACTTTATTGAGTACAATGGGGAAGGGAGG  600

seq1  AGGGCTGGGAAGGAGCGGAGGTATCACTGCCATGGTTTCTCGTATAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGGAAGGAGCGGAGGTATCACTGCCATGGTTTCTCGTATAGAGC  650

seq1  TGTGACTGAGGGGTAAAATCATGGACAAAAAATTATTTTATATGATAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGAGGGGTAAAATCATGGACAAAAAATTATTTTATATGATAACA  700

seq1  GAAGGAGATGAAAGAAGAATGCAGGAGCT-GGAGGGT-GGGGGAGGGGCT  748
      ||||||||||||||||||||||||||||| ||||||| |||||||||   
seq2  GAAGGAGATGAAAGAAGAATGCAGGAGCTGGGAGGGTGGGGGGAGGG---  747

seq1  GCTCCGCTGGCCATCCTATAATATGACACGGCTAGTACACATGTCAGCCT  798
                                                        
seq2  --------------------------------------------------  747

seq1  CATACATGAACTCATAGCAGCTTTGGCTATCTACACACTATTCCCATAAG  848
                                                        
seq2  --------------------------------------------------  747

seq1  ACCAAAAAAAAAAAAAGTTTCCAGCATAGACAGGGAAGGGTCTTTCAGCA  898
                                                        
seq2  --------------------------------------------------  747

seq1  TGGACAGGGAAGGGTCTGTAGGATGCCTCACCCCTGGCTAAGGAGCTAAT  948
                                                        
seq2  --------------------------------------------------  747

seq1  GGCAGCTGATGGCTGCAGAGGAGGG  973
                               
seq2  -------------------------  747