BAC Information

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BAC

Clone NameB6Ng01-032K19
Chromosome12 (Build37)
Map Location 20,177,155 - 20,325,229
singlet/doubletdoublet
Overlap geneLOC668614, LOC100042751
Upstream geneLOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605
Downstream geneLOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032K19.bB6Ng01-032K19.g
ACCDH861934DH861935
length1,0361,172
definitionDH861934|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K19, 5' end.DH861935|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,177,155 - 20,178,188)(20,324,031 - 20,325,229)
sequence
gaattctcccaacataaaaaccttcattttccaatgagaaaactgaagtt
ggggagccaagtggtttattcaagagcagttgattcttgtgagtgggagt
gaagaccataggatactacaagataggagcattgttctgagaaaagggag
tccacagcaatcaccctagattgcacctcactagaaatgcacagagttca
ttgtatagatagggcaggttggagatgcaaactctgttggagttatcaga
ttggaaagcaggaagaaactgtgactgtcgtggcaagaccaaggttgttc
taaagacacacttgtgccctcccttcagctttctgaggactgtgacaatg
gaccccaaggaactggaattttcaccaggaatttcaagctgacataggga
aagtgctgggaccgtgacactagccagaacaggagtctgtctctggtgct
gccagccagcaggacagatatggggaagggttgtgtgcagaggagagaca
aggttgggtcgaccactggctgaatcttgaccatgacggccaaacctaaa
catatctgtagtcaggagtagagagagatggatcctggtgctcagcctgc
tttctcatttttaatcagcccaggatcccaacctacagaagggtgctacc
aacacttagggtgagtcttttcttttatatagtgctacctagaaattctc
ctacagatgtgtccacaggtttatcgtctaggtaattctagattccatca
agttgacaatcattatccacagtcacagagccatcagtgagtaggtagtg
atcctcgttagtgggagcactggatgtggaatcaagggactttgttctgg
caatggcctttctgttattcacacttgtgggaaacagctagactgctgtt
cctcttacttagccctgggttctagcacatataaaatgggtttgggtgac
atgcctgtgatgctagtacttgcaaacagtttgttattgtttgtttttca
agacaaggtttctctggtgtagcactggctatctgg
gaattccaattgagagggagatgtacggtgaaatagatcaacactactga
ggacacatcccagaaattgtaagaagaatcactaatgagaaaaatcatgg
acaagcagggtgtatttgttcatgtctttaatcccagagtcacgggcagg
tatacgtcattgagctggatccctgtctgttctatgtaacacattccagg
acagcagaggttacatactaagacccttactccactgcaaatatcaacca
cagatacaaaaatgatagaaagaactcagttgtttaccacagttcctcca
aagaagtatacattccctgcacttctgtactcatctagcagaaacaggaa
gtgttacgctttaaactgcaacattactaaaactttactagcaatcaagg
cacatttaatggaccaatggacagatgaaaatattattaatataagtgta
gaacataaaaagcagcataaggcaggagagagcgatagataactcagcca
tggaaatctcttgctggtcttccagataacagttgtcaattactagcatt
caggggacacatggctttatgaacaggagttctgaatccaccttccaaca
acactaaggatatggcacacatgatattcatattcacacacacaggcaaa
acactcctatttatttaaaaatttcaaaacaaacacaagagtttggggaa
acatcaacacccagaatacaatgactctgaaccctcaggcagtattgatg
tcatgagcatatgccatcctaaaaaatagactataatctatgtgcccatg
gagcacatagggggccccaaccccactcaaaggagaaacagaggagattg
ggaggagggaatctgtgagggcatggacctagagtagggacagtgatcag
ggtgataatgatatctaaattataggataacaaaaaaaaaaggaagaaag
aaaggaaattttgagtgtattacactttcatcttcccagatgatctagaa
agtctcctggactgttcaatgtctaatgttcttttgaacctcagacagta
ttttggaatgcacttcaaagcaatgttgctaatcacagtcagtttatatc
ttctcactaactggcactgaattcctttccattccgacaagagatgtccc
agggaagagaagatttgacaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_20177155_20178188
seq2: B6Ng01-032K19.b_44_1076

seq1  GAATTCTCCCAACATAAAAACCTTCATTTTCCAATGAGAAAACTGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAACATAAAAACCTTCATTTTCCAATGAGAAAACTGAAGTT  50

seq1  GGGGAGCCAAGTGGTTTATTCAAGAGCAGTTGATTCTTGTGAGTGGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCCAAGTGGTTTATTCAAGAGCAGTTGATTCTTGTGAGTGGGAGT  100

seq1  GAAGACCATAGGATACTACAAGATAGGAGCATTGTTCTGAGAAAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATAGGATACTACAAGATAGGAGCATTGTTCTGAGAAAAGGGAG  150

seq1  TCCACAGCAATCACCCTAGATTGCACCTCACTAGAAATGCACAGAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCAATCACCCTAGATTGCACCTCACTAGAAATGCACAGAGTTCA  200

seq1  TTGTATAGATAGGGCAGGTTGGAGATGCAAACTCTGTTGGAGTTATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGATAGGGCAGGTTGGAGATGCAAACTCTGTTGGAGTTATCAGA  250

seq1  TTGGAAAGCAGGAAGAAACTGTGACTGTCGTGGCAAGACCAAGGTTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGCAGGAAGAAACTGTGACTGTCGTGGCAAGACCAAGGTTGTTC  300

seq1  TAAAGACACACTTGTGCCCTCCCTTCAGCTTTCTGAGGACTGTGACAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACACACTTGTGCCCTCCCTTCAGCTTTCTGAGGACTGTGACAATG  350

seq1  GACCCCAAGGAACTGGAATTTTCACCAGGAATTTCAAGCTGACATAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAGGAACTGGAATTTTCACCAGGAATTTCAAGCTGACATAGGGA  400

seq1  AAGTGCTGGGACCGTGACACTAGCCAGAACAGGAGTCTGTCTCTGGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGACCGTGACACTAGCCAGAACAGGAGTCTGTCTCTGGTGCT  450

seq1  GCCAGCCAGCAGGACAGATATGGGGAAGGGTTGTGTGCAGAGGAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGCAGGACAGATATGGGGAAGGGTTGTGTGCAGAGGAGAGACA  500

seq1  AGGTTGGGTCGACCACTGGCTGAATCTTGACCATGACGGCCAAACCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGGTCGACCACTGGCTGAATCTTGACCATGACGGCCAAACCTAAA  550

seq1  CATATCTGTAGTCAGGAGTAGAGAGAGATGGATCCTGGTGCTCAGCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTAGTCAGGAGTAGAGAGAGATGGATCCTGGTGCTCAGCCTGC  600

seq1  TTTCTCATTTTTAATCAGCCCAGGATCCCAACCTACAGAAGGGTGCTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTTTTAATCAGCCCAGGATCCCAACCTACAGAAGGGTGCTACC  650

seq1  AACACTTAGGGTGAGTCTTTTCTTTTATATAGTGCTACCTAGAAATTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTAGGGTGAGTCTTTTCTTTTATATAGTGCTACCTAGAAATTCTC  700

seq1  CTACAGATGTGTCCACAGGTTTATCGTCTAGGTAATTCTAGATTCCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATGTGTCCACAGGTTTATCGTCTAGGTAATTCTAGATTCCATCA  750

seq1  AGTTGACAATCATTATCCACAGTCACAGAGCCATCAGTGAGTAGGTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAATCATTATCCACAGTCACAGAGCCATCAGTGAGTAGGTAGTG  800

seq1  ATCCTCGTTAGTGGGAGCACTGGATGTGGAATCAAGGGACTTTGTTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGTTAGTGGGAGCACTGGATGTGGAATCAAGGGACTTTGTTCTGG  850

seq1  CAATGGCCTTTCTGTTAGTCACACTTGTGGGAAACAGCTAGACTGCTGTC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  CAATGGCCTTTCTGTTATTCACACTTGTGGGAAACAGCTAGACTGCTGTT  900

seq1  CTTCTTACTTAGCCCTGGGTTCTAGCACCATATAAAATGGGTTTGGGTGA  950
      | ||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CCTCTTACTTAGCCCTGGGTTCTAGCA-CATATAAAATGGGTTTGGGTG-  948

seq1  ACATGCCTGTGATGCTAGTACTTGCAAACAGTTTGTTATTGTTTGTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTGTGATGCTAGTACTTGCAAACAGTTTGTTATTGTTTGTTTTT  998

seq1  CAAGACAAGGTTTCTCT-GTGTAGCACTGGCTATC  1034
      ||||||||||||||||| |||||||||||||||||
seq2  CAAGACAAGGTTTCTCTGGTGTAGCACTGGCTATC  1033

seq1: chr12_20324031_20325229
seq2: B6Ng01-032K19.g_67_1237 (reverse)

seq1  TTGTCCAATCTTCTCTTCCTATGTGCACATTCCTATTGACTGGAATGGAA  50
      ||||| |||||||||||||  || | ||||  || ||| | |||||||||
seq2  TTGTCAAATCTTCTCTTCC-CTG-GGACAT--CTCTTGTC-GGAATGGAA  45

seq1  AGGAGTATTCAGTGCCAGTTTATGTAGGAAAGATAT-AACTTGCTGTTTG  99
      ||||  ||||||||||||||  || ||  ||||||| ||||  |||  ||
seq2  AGGA--ATTCAGTGCCAGTTAGTG-AG--AAGATATAAACTGACTG--TG  88

seq1  ATTTTGCAACTTTGCTTTCTGATGTGGCTGTCAAGATACTGTCTTGAGTG  149
      | || ||||| ||||||  ||| |||  |  ||| |||||||| ||||  
seq2  A-TTAGCAACATTGCTT--TGAAGTGCATTCCAAAATACTGTC-TGAGGT  134

seq1  TCAGCAGAGACTTTAGACATTTGAACAGTTCAGGAGACTTTCTAGATTCA  199
      |||  ||| || ||||||| ||||||||| |||||||||||||||| |||
seq2  TCAAAAGA-ACATTAGACA-TTGAACAGTCCAGGAGACTTTCTAGA-TCA  181

seq1  TCTTGGGGAAGATGAAAGTGTATATACACTCAAAATTTTCCTTTTTCTTT  249
      |||  ||||||||||||||||| ||||||||||||||| |   |||||||
seq2  TCT--GGGAAGATGAAAGTGTA-ATACACTCAAAATTTCC---TTTCTTT  225

seq1  CTTTCCTTTTTTTTTTTGTTTATCCTATAATTTAGATATTCATTATCACC  299
      | ||||||||||||||   ||||||||||||||||||| |||||||||||
seq2  C-TTCCTTTTTTTTTT--GTTATCCTATAATTTAGATA-TCATTATCACC  271

seq1  CTGATCACTGTCCCTACTCTAGGTCCATGCCCTCACAGATTCCCTCCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCACTGTCCCTACTCTAGGTCCATGCCCTCACAGATTCCCTCCTCC  321

seq1  CAATCTCCTCTGTTTCTCCTTTGAGTGGGGTTGGGGCCCCCTATGTGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCTCTGTTTCTCCTTTGAGTGGGGTTGGGGCCCCCTATGTGCTC  371

seq1  CATGGGCACATAGATTATAGTCTATTTTTTAGGATGGCATATGCTCATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCACATAGATTATAGTCTATTTTTTAGGATGGCATATGCTCATGA  421

seq1  CATCAATACTGCCTGAGGGTTCAGAGTCATTGTATTCTGGGTGTTGATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATACTGCCTGAGGGTTCAGAGTCATTGTATTCTGGGTGTTGATGT  471

seq1  TTCCCCAAACTCTTGTGTTTGTTTTGAAATTTTTAAATAAATAGGAGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAACTCTTGTGTTTGTTTTGAAATTTTTAAATAAATAGGAGTGT  521

seq1  TTTGCCTGTGTGTGTGAATATGAATATCATGTGTGCCATATCCTTAGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGTGTGTGTGAATATGAATATCATGTGTGCCATATCCTTAGTGT  571

seq1  TGTTGGAAGGTGGATTCAGAACTCCTGTTCATAAAGCCATGTGTCCCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAGGTGGATTCAGAACTCCTGTTCATAAAGCCATGTGTCCCCTG  621

seq1  AATGCTAGTAATTGACAACTGTTATCTGGAAGACCAGCAAGAGATTTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGTAATTGACAACTGTTATCTGGAAGACCAGCAAGAGATTTCCA  671

seq1  TGGCTGAGTTATCTATCGCTCTCTCCTGCCTTATGCTGCTTTTTATGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGTTATCTATCGCTCTCTCCTGCCTTATGCTGCTTTTTATGTTC  721

seq1  TACACTTATATTAATAATATTTTCATCTGTCCATTGGTCCATTAAATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTATATTAATAATATTTTCATCTGTCCATTGGTCCATTAAATGTG  771

seq1  CCTTGATTGCTAGTAAAGTTTTAGTAATGTTGCAGTTTAAAGCGTAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTGCTAGTAAAGTTTTAGTAATGTTGCAGTTTAAAGCGTAACAC  821

seq1  TTCCTGTTTCTGCTAGATGAGTACAGAAGTGCAGGGAATGTATACTTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTCTGCTAGATGAGTACAGAAGTGCAGGGAATGTATACTTCTT  871

seq1  TGGAGGAACTGTGGTAAACAACTGAGTTCTTTCTATCATTTTTGTATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAACTGTGGTAAACAACTGAGTTCTTTCTATCATTTTTGTATCTG  921

seq1  TGGTTGATATTTGCAGTGGAGTAAGGGTCTTAGTATGTAACCTCTGCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATATTTGCAGTGGAGTAAGGGTCTTAGTATGTAACCTCTGCTGT  971

seq1  CCTGGAATGTGTTACATAGAACAGACAGGGATCCAGCTCAATGACGTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATGTGTTACATAGAACAGACAGGGATCCAGCTCAATGACGTATA  1021

seq1  CCTGCCCGTGACTCTGGGATTAAAGACATGAACAAATACACCCTGCTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCGTGACTCTGGGATTAAAGACATGAACAAATACACCCTGCTTGT  1071

seq1  CCATGATTTTTCTCATTAGTGATTCTTCTTACAATTTCTGGGATGTGTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTTTTCTCATTAGTGATTCTTCTTACAATTTCTGGGATGTGTCC  1121

seq1  TCAGTAGTGTTGATCTATTTCACCGTACATCTCCCTCTCAATTGGAATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTGTTGATCTATTTCACCGTACATCTCCCTCTCAATTGGAATTC  1171