BAC Information

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BAC

Clone NameB6Ng01-032M10
Chromosome12 (Build37)
Map Location 40,284,902 - 40,406,571
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032M10.bB6Ng01-032M10.g
ACCDH862012DH862013
length1,1081,181
definitionDH862012|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M10, 5' end.DH862013|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,405,454 - 40,406,571)(40,284,902 - 40,286,107)
sequence
gaattctcacgtgtttggtgggaccaaaaaatgtcccacaaaatttgcat
tattttacagataaaaatatttcactccatgatatgcttttgctgcatta
tttaagatcatattaagaactcaaactattgaagccagaaaaataaataa
tataaataagatttatgatagatgaaagatgtgctgatggacataaaaca
aatagaaagtattgatgagaaggaaggacaggctctaaaggattaatgcc
tctcaaatgcacactggtgtcctaacttccagaaacacagaatgtgaccc
tattaggaagtagtcctgttgaaactgtgaatagttaatgtgaggtcata
ctaagtaggatttacccataacccaatgacttagtattctcataagagtg
agaatatctacacagatacacatatcagaaaacatggcgtgtgactatgg
gaatagagagtgagtgatcaacaggggtggaagatgttggacttctagta
aacccccatatttaagggaaggtttatgcaatggatttgccaaatagctc
tcagaggaaccaagcctgttgacatatggcttttagacgtccagcctcca
ctcactgtgaaattatgtatttcttttgtttaaaccacaaagtgtagcat
tattataagaggcctaataagtaggtcctgcagaatttaggcaccaaatg
ctcttgtggcatccaggatgtatgagcctggtgcacgatgaagcttgccc
tcacatcatggggtatcagatgcacaaggctgttggaagctcatacacag
ctcatgtatagctcactcttcgttattgctcagaataacaaatccctctg
aaggttgtagtgtcgtcctgatactcaaatgtgtgctactagaaaacaca
tgtaaagactttctaaaaggtttccttttggaaactagacatcacctcct
tagtgtgagaagtcttgattttgcagatgcatagtcagcatttcccatag
tcatttatttataaacaatggaccttgtcttgcaatctgattacaatcaa
taaaaagtctgttagcctcgaaaagtcatggcacatgctggtaatttttt
ttattttt
gaattcaaacagcagaaaaaaaccatccaaataaaaattcaatgaactta
aacaattcatctgaaattatccagttagagaaatttttaaataaaaataa
aataagaataagaagagtgtggaagattgtaagcttgtgtggcatcattt
agcacaatgaaacttctagaaagagaacttctagaaagagaggagagaag
aaaactgagaaggaaatatttttacttttcaaataaaaaatggcttagaa
atcctcaagccggccaggcgtggtggtgcatgcctttaattccagcactt
gggaggcagagacaggcagatttctgagtttgagaacatcctgatctaca
aagtgagttccaggactaaacagagaaaccctgtctcaaaaaaccaaaaa
aaaaaaaaaaaaaagaaagaaaaaaaaaaaagaaatccccaagccaaaag
agaaatgggcgctctggcccatatactctaatgtagattcttaatagctt
ctaagttgcctcataaacagtctatattaagcaacattcagctgaatgat
atacaataatacattaaataatcagaatttaacaagaaagttagaacttt
acaataaaatgacttttcacaaacaaaggaagactgatattatttagcat
aaacttcgcaagccaggagaatacaaagtgcaatgctcaaagtatagaga
aaaaagtatttcccagaaaaatagttatttaatagtgaagaactgataca
gagatttcagaccagcaaaaatcgggagaattcaatactactacaagaaa
tactgaaaggaactcttagaagtaaaggtgggcaaacactaaaacagaaa
ggcacacgaagaacaaatctcagtgcagagataaacagaatgagaataca
gaatgcttacatgtaatagttatgtaatgcttatgtaatagttgctcaca
aacacttggagcactagcacaccaatgccaggcattgtagaatagatatg
gacacagaatgtgttattgaaagatgaggaagaattatttgatggcatca
atactgaactgagtgtggggaaagctacagtcttttccagactcacatta
aggtgaaatctcctgctttctcgccctctctgcccgtcttatctgaagtc
agtccctgaccgaactaaaccggtattgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40405454_40406571
seq2: B6Ng01-032M10.b_45_1152 (reverse)

seq1  AAAAAAAAAAAAAATTACCAGCATGTGCAATGACTTTTACAGAGGCTAAA  50
      ||||| |||||||||||||||||||||| |||||||||   |||||| ||
seq2  AAAAATAAAAAAAATTACCAGCATGTGCCATGACTTTT--CGAGGCT-AA  47

seq1  CAGACTTTTTATTGATTTGTAAATCAAGATTGCAAGACATAGTCCAATTG  100
      ||||||||||||||| |||| |||| |||||||||||||  |||| ||||
seq2  CAGACTTTTTATTGA-TTGT-AATC-AGATTGCAAGACAAGGTCC-ATTG  93

seq1  TTTATTAAATAAAATGACTATGTGAAATGCTGACTATGCCATCTGCAAAA  150
      |||| ||||| ||||||||||| ||||||||||||||| |||||||||||
seq2  TTTA-TAAAT-AAATGACTATGGGAAATGCTGACTATG-CATCTGCAAAA  140

seq1  TCAAGACTTTCTCACACTAAGGAGGTGATGTCTAGTTTCCAAAGGAAACC  200
      ||||||| ||||||||||||||||||||||||||||||||||| | || |
seq2  TCAAGAC-TTCTCACACTAAGGAGGTGATGTCTAGTTTCCAAAAGGAAAC  189

seq1  CTTTTAG-AAGTCTTTACATGTGTTTTCTAGTAGCACACATTTGAGTATC  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAAAGTCTTTACATGTGTTTTCTAGTAGCACACATTTGAGTATC  239

seq1  AGGACGACACTACAACCTTCAGAGGGATTTGTTATTCTGAGCAATAACGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGACACTACAACCTTCAGAGGGATTTGTTATTCTGAGCAATAACGA  289

seq1  AGAGTGAGCTATACATGAGCTGTGTATGAGCTTCCAACAGCCTTGTGCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCTATACATGAGCTGTGTATGAGCTTCCAACAGCCTTGTGCAT  339

seq1  CTGATACCCCATGATGTGAGGGCAAGCTTCATCGTGCACCAGGCTCATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCCCATGATGTGAGGGCAAGCTTCATCGTGCACCAGGCTCATAC  389

seq1  ATCCTGGATGCCACAAGAGCATTTGGTGCCTAAATTCTGCAGGACCTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGATGCCACAAGAGCATTTGGTGCCTAAATTCTGCAGGACCTACT  439

seq1  TATTAGGCCTCTTATAATAATGCTACACTTTGTGGTTTAAACAAAAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGCCTCTTATAATAATGCTACACTTTGTGGTTTAAACAAAAGAAA  489

seq1  TACATAATTTCACAGTGAGTGGAGGCTGGACGTCTAAAAGCCATATGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATTTCACAGTGAGTGGAGGCTGGACGTCTAAAAGCCATATGTCA  539

seq1  ACAGGCTTGGTTCCTCTGAGAGCTATTTGGCAAATCCATTGCATAAACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTGGTTCCTCTGAGAGCTATTTGGCAAATCCATTGCATAAACCT  589

seq1  TCCCTTAAATATGGGGGTTTACTAGAAGTCCAACATCTTCCACCCCTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAATATGGGGGTTTACTAGAAGTCCAACATCTTCCACCCCTGTT  639

seq1  GATCACTCACTCTCTATTCCCATAGTCACACGCCATGTTTTCTGATATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTCACTCTCTATTCCCATAGTCACACGCCATGTTTTCTGATATGT  689

seq1  GTATCTGTGTAGATATTCTCACTCTTATGAGAATACTAAGTCATTGGGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTGTAGATATTCTCACTCTTATGAGAATACTAAGTCATTGGGTT  739

seq1  ATGGGTAAATCCTACTTAGTATGACCTCACATTAACTATTCACAGTTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAAATCCTACTTAGTATGACCTCACATTAACTATTCACAGTTTCA  789

seq1  ACAGGACTACTTCCTAATAGGGTCACATTCTGTGTTTCTGGAAGTTAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTACTTCCTAATAGGGTCACATTCTGTGTTTCTGGAAGTTAGGA  839

seq1  CACCAGTGTGCATTTGAGAGGCATTAATCCTTTAGAGCCTGTCCTTCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTGCATTTGAGAGGCATTAATCCTTTAGAGCCTGTCCTTCCTT  889

seq1  CTCATCAATACTTTCTATTTGTTTTATGTCCATCAGCACATCTTTCATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAATACTTTCTATTTGTTTTATGTCCATCAGCACATCTTTCATCT  939

seq1  ATCATAAATCTTATTTATATTATTTATTTTTCTGGCTTCAATAGTTTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAATCTTATTTATATTATTTATTTTTCTGGCTTCAATAGTTTGAG  989

seq1  TTCTTAATATGATCTTAAATAATGCAGCAAAAGCATATCATGGAGTGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATATGATCTTAAATAATGCAGCAAAAGCATATCATGGAGTGAAA  1039

seq1  TATTTTTATCTGTAAAATAATGCAAATTTTGTGGGACATTTTTTGGTCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATCTGTAAAATAATGCAAATTTTGTGGGACATTTTTTGGTCCC  1089

seq1  ACCAAACACGTGAGAATTC  1118
      |||||||||||||||||||
seq2  ACCAAACACGTGAGAATTC  1108

seq1: chr12_40284902_40286107
seq2: B6Ng01-032M10.g_69_1249

seq1  GAATTCAAACAGCAGAAAAAAACCATCCAAATAAAAATTCAATGAACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGCAGAAAAAAACCATCCAAATAAAAATTCAATGAACTTA  50

seq1  AACAATTCATCTGAAATTATCCAGTTAGAGAAATTTTTAAATAAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCATCTGAAATTATCCAGTTAGAGAAATTTTTAAATAAAAATAA  100

seq1  AATAAGAATAAGAAGAGTGTGGAAGATTGTAAGCTTGTGTGGCATCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATAAGAAGAGTGTGGAAGATTGTAAGCTTGTGTGGCATCATTT  150

seq1  AGCACAATGAAACTTCTAGAAAGAGAACTTCTAGAAAGAGAGGAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATGAAACTTCTAGAAAGAGAACTTCTAGAAAGAGAGGAGAGAAG  200

seq1  AAAACTGAGAAGGAAATATTTTTACTTTTCAAATAAAAAATGGCTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAGAAGGAAATATTTTTACTTTTCAAATAAAAAATGGCTTAGAA  250

seq1  ATCCTCAAGCCGGCCAGGCGTGGTGGTGCATGCCTTTAATTCCAGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAGCCGGCCAGGCGTGGTGGTGCATGCCTTTAATTCCAGCACTT  300

seq1  GGGAGGCAGAGACAGGCAGATTTCTGAGTTTGAGAACATCCTGATCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGACAGGCAGATTTCTGAGTTTGAGAACATCCTGATCTACA  350

seq1  AAGTGAGTTCCAGGACTAAACAGAGAAACCCTGTCTCAAAAAACCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACTAAACAGAGAAACCCTGTCTCAAAAAACCAAAAA  400

seq1  AAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAGAAATCCCCAAGCCAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAGAAATCCCCAAGCCAAAAG  450

seq1  AGAAATGGGCGCTCTGGCCCATATACTCTAATGTAGATTCTTAATAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGCGCTCTGGCCCATATACTCTAATGTAGATTCTTAATAGCTT  500

seq1  CTAAGTTGCCTCATAAACAGTCTATATTAAGCAACATTCAGCTGAATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGCCTCATAAACAGTCTATATTAAGCAACATTCAGCTGAATGAT  550

seq1  ATACAATAATACATTAAATAATCAGAATTTAACAAGAAAGTTAGAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAATACATTAAATAATCAGAATTTAACAAGAAAGTTAGAACTTT  600

seq1  ACAATAAAATGACTTTTCACAAACAAAGGAAGACTGATATTATTTAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAATGACTTTTCACAAACAAAGGAAGACTGATATTATTTAGCAT  650

seq1  AAACTTCGCAAGCCAGGAGAATACAAAGTGCAATGCTCAAAGTATAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCGCAAGCCAGGAGAATACAAAGTGCAATGCTCAAAGTATAGAGA  700

seq1  AAAAAGTATTTCCCAGAAAAATAGTTATTTAATAGTGAAGAACTGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATTTCCCAGAAAAATAGTTATTTAATAGTGAAGAACTGATACA  750

seq1  GAGATTTCAGACCAGCAAAAATCGGGAGAATTCAATACTACTACAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCAGACCAGCAAAAATCGGGAGAATTCAATACTACTACAAGAAA  800

seq1  TACTGAAAGGAACTCTTAGAAGTAAAGGTGGGCAAACACT-AAACAGAAA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACTGAAAGGAACTCTTAGAAGTAAAGGTGGGCAAACACTAAAACAGAAA  850

seq1  GGCACACGAAGAACAAATCTCAGTGCAGAGATAAACAGAATGAGAATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACGAAGAACAAATCTCAGTGCAGAGATAAACAGAATGAGAATACA  900

seq1  GAATGCTTACATGTAATAGTTATGTAATGCTTATGTAATAGTTGCTCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATGCTTACATGTAATAGTTATGTAATGCTTATGTAATAGTTGCTCAC-  949

seq1  AAACACTTGGAGCACTAGCACACCAATGGCAGGGCATGTAGAAATAGATA  999
      |||||||||||||||||||||||||||| ||||   ||||| ||||||||
seq2  AAACACTTGGAGCACTAGCACACCAATGCCAGGCATTGTAG-AATAGATA  998

seq1  TGGACACAGAAATGTGTTAATGGAAAGAATGAAGGAAGAATATATGT-AT  1048
      ||||||||| |||||||| || ||||| ||| ||||||||| ||| | ||
seq2  TGGACACAG-AATGTGTT-ATTGAAAG-ATG-AGGAAGAAT-TATTTGAT  1043

seq1  GGCATCAATTACTGAACTGAGTGTGGGGGACAAAGCTACAGTACTCTTCC  1098
      |||||||| |||||||||||||||||||   ||||||||||   ||||  
seq2  GGCATCAA-TACTGAACTGAGTGTGGGG---AAAGCTACAG---TCTTTT  1086

seq1  CCAGACTCAGCATTAGAGTGACATCTCCTGCTTCCTTCGTCCCTCTCTGC  1148
      ||||||||| |||||  |||| ||||||||||| | ||| ||||||||| 
seq2  CCAGACTCA-CATTAAGGTGAAATCTCCTGCTTTC-TCG-CCCTCTCTG-  1132

seq1  TCCAGTCTTATCCTGAGGTTCAGTCCCACTGCACCGAAACTAAAACCTGA  1198
       || ||||||| |||| | |||||||  ||| |||| |||||||  | | 
seq2  -CCCGTCTTAT-CTGAAG-TCAGTCC--CTG-ACCG-AACTAAA--CCGG  1173

seq1  TATTGTTA  1206
      ||||||||
seq2  TATTGTTA  1181