BAC Information

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BAC

Clone NameB6Ng01-033C15
Chromosome12 (Build37)
Map Location 89,579,851 - 89,707,012
singlet/doubletdoublet
Overlap geneLOC620915, LOC435314, Adck1
Upstream geneAI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033C15.bB6Ng01-033C15.g
ACCDH862296DH862297
length1,073814
definitionDH862296|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C15, 5' end.DH862297|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,705,927 - 89,707,012)(89,579,851 - 89,580,559)
sequence
gaattcttgagatggagggaaagaattacaaaaatcacaagtacttctag
tcctaaaaaaataattgcacttctgatactaattctccttttgagaattt
cctggaaagggtatatcctggcctacagtattccaagaggcctggtttcc
aaggaacaaaatgcataggtgagatataacactcaaggggaatcctcacc
cagctgtaccctgggcaagtgcccaacatcttcatcctgaggaggctttg
gaaagcagagagggcttcatcgccagcagcctgggaaggatcaagctcag
atcaagctgtgttctccactggagaaaaacagaaaatcaatggaatgtca
cacaacaaagggctgagccctagttctggctgtggaccaccccagttcag
agtctatcaccacctgccactggttcctggctgcttccatctgtgacata
taccttctgtgcagtgtgtccatctgcccaaagctgacagtggcgccccc
tagactatgtagaggtgttacataaggcgcgcagagaaaacacatgatca
gtgctcagtgttagctgttattatctttattgctttaaaaaacacgtttt
tattgactgctaagtctcctaataggaagaacactagcttagcactatca
gttatcagtactgtggaagttagagcattattcttcttgataatgttctc
aaaggtgtccacaaatggtaccctatggccagaacactttgtggatgtga
ttctatgaaggcttttgacagagagagattattctgggttagtcagatgg
ctctagtattcactgtaacagtctttctggggagaattggaggatcagag
gaaaagcatggtaacagaggcaaaggtcagagtgatacagtcacagcagg
ggattcagacagcctccatgacattaaaaggcaagtacacatcccttcat
ctctactcctgaccaaagtcttgttcagacttctggcatctggagctagg
agaactgaagtacgacgtgtatgcccctctaagttccaggaatccatata
gcggtaacaactaaccacaccta
gaattcagtaggaattcagtgagaaggttatctattcagtaacatttaaa
tttacttcgagtagagactgtgaaactaattaggcattacaaagaaggga
gccaaaatagctctgagctggtctgaggagtgtttacttgagacaatagc
cagtcttacccagacaagggaattcacaatggcccagtgaataggtgggt
ttaccataaaagaattagggaatcaccctgagacaggtttcttaactagg
cccaaaaaaaaaaaacaacataaatcaaatcaggcatttacaaggaaccc
ctggtggtgggcttaacaatagactagcattaaacctagctcccttctta
gtggcagcggcctggtccccaccttcttttgatttatacattccttatgt
tttgtgtcactataacttggtggttgtatctctcctcgtttcttgttatt
ctgtataaaaagttttgatactcaacttgacaattacattcagattctac
acaacctctcgtgttgatcttcctgtcatttatttcgccaactccttgtc
cacctgcaaccagagacccattctacgcaggcagggaccaaaaagggtct
gcagcacttccccttggatatacatggtgggatcttccaagcctgctgtg
tttttacatgagatgaccactaagaacagcagcagcagtggaggataggc
agctggagcctagaagacaaggtgtatgctacatagggcagaactggaga
ggtgaccaagctcttggaagaacccaaagatcctgagtggattgaagtca
tgggtggtggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89705927_89707012
seq2: B6Ng01-033C15.b_40_1112 (reverse)

seq1  TAGGTGTGGTTGGTTTGTTTACCTGCTATAATGGATTCCTGTGAACTTAG  50
      ||||||||||| |||   ||||| ||||| ||||||||||| ||||||| 
seq2  TAGGTGTGGTTAGTT--GTTACC-GCTAT-ATGGATTCCTG-GAACTTA-  44

seq1  GAGTGGCATACACGTCGTACCTTCAGTTTCTCCTAGCTCCAGATGCCAGA  100
      ||| ||||||||||||||| |||||| |||||||||||||||||||||||
seq2  GAGGGGCATACACGTCGTA-CTTCAG-TTCTCCTAGCTCCAGATGCCAGA  92

seq1  AGTCTGGAACCAGACTTTGGTCAGGAGTAGAGAATGAAGGGAATGTGTTA  150
      ||||| |||| ||||||||||||||||||||| |||||||| ||||| ||
seq2  AGTCT-GAACAAGACTTTGGTCAGGAGTAGAG-ATGAAGGG-ATGTG-TA  138

seq1  CTTGGCCTTTTATGGTCATGGAGGCTGTCTGAATCCCCTGCTTGTGACTG  200
      ||| ||||||||  ||||||||||||||||||||||||||| ||||||||
seq2  CTT-GCCTTTTAATGTCATGGAGGCTGTCTGAATCCCCTGC-TGTGACTG  186

seq1  TATCACTCTGACC-TTGCCTCTGTTACCATGCTTCTCCTCTGATCCTCCA  249
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TATCACTCTGACCTTTGCCTCTGTTACCATGCTTTTCCTCTGATCCTCCA  236

seq1  ATTCTCCCCAGAAAGACTGTTACAGTGAATACTAGAGCCATCTGACTAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCCAGAAAGACTGTTACAGTGAATACTAGAGCCATCTGACTAAC  286

seq1  CCAGAATAATCTCTCTCTGTCAAAAGCCTTCATAGAATCACATCCACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAATCTCTCTCTGTCAAAAGCCTTCATAGAATCACATCCACAAA  336

seq1  GTGTTCTGGCCATAGGGTACCATTTGTGGACACCTTTGAGAACATTATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGCCATAGGGTACCATTTGTGGACACCTTTGAGAACATTATCA  386

seq1  AGAAGAATAATGCTCTAACTTCCACAGTACTGATAACTGATAGTGCTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATAATGCTCTAACTTCCACAGTACTGATAACTGATAGTGCTAAG  436

seq1  CTAGTGTTCTTCCTATTAGGAGACTTAGCAGTCAATAAAAACGTGTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTTCTTCCTATTAGGAGACTTAGCAGTCAATAAAAACGTGTTTTT  486

seq1  TAAAGCAATAAAGATAATAACAGCTAACACTGAGCACTGATCATGTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATAAAGATAATAACAGCTAACACTGAGCACTGATCATGTGTTT  536

seq1  TCTCTGCGCGCCTTATGTAACACCTCTACATAGTCTAGGGGGCGCCACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCGCGCCTTATGTAACACCTCTACATAGTCTAGGGGGCGCCACTG  586

seq1  TCAGCTTTGGGCAGATGGACACACTGCACAGAAGGTATATGTCACAGATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTGGGCAGATGGACACACTGCACAGAAGGTATATGTCACAGATG  636

seq1  GAAGCAGCCAGGAACCAGTGGCAGGTGGTGATAGACTCTGAACTGGGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCCAGGAACCAGTGGCAGGTGGTGATAGACTCTGAACTGGGGTG  686

seq1  GTCCACAGCCAGAACTAGGGCTCAGCCCTTTGTTGTGTGACATTCCATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGCCAGAACTAGGGCTCAGCCCTTTGTTGTGTGACATTCCATTG  736

seq1  ATTTTCTGTTTTTCTCCAGTGGAGAACACAGCTTGATCTGAGCTTGATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTTTTCTCCAGTGGAGAACACAGCTTGATCTGAGCTTGATCC  786

seq1  TTCCCAGGCTGCTGGCGATGAAGCCCTCTCTGCTTTCCAAAGCCTCCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGCTGCTGGCGATGAAGCCCTCTCTGCTTTCCAAAGCCTCCTCA  836

seq1  GGATGAAGATGTTGGGCACTTGCCCAGGGTACAGCTGGGTGAGGATTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGATGTTGGGCACTTGCCCAGGGTACAGCTGGGTGAGGATTCCC  886

seq1  CTTGAGTGTTATATCTCACCTATGCATTTTGTTCCTTGGAAACCAGGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGTTATATCTCACCTATGCATTTTGTTCCTTGGAAACCAGGCCT  936

seq1  CTTGGAATACTGTAGGCCAGGATATACCCTTTCCAGGAAATTCTCAAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATACTGTAGGCCAGGATATACCCTTTCCAGGAAATTCTCAAAAG  986

seq1  GAGAATTAGTATCAGAAGTGCAATTATTTTTTTAGGACTAGAAGTACTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTAGTATCAGAAGTGCAATTATTTTTTTAGGACTAGAAGTACTTG  1036

seq1  TGATTTTTCTAATTCTTTCCCTCCATCTCAAGAATTC  1086
      |||||||| ||||||||||||||||||||||||||||
seq2  TGATTTTTGTAATTCTTTCCCTCCATCTCAAGAATTC  1073

seq1: chr12_89579851_89580559
seq2: B6Ng01-033C15.g_175_879

seq1  GCTCTGAGCTGGTCTGAGGAGTGTTTACTTGAGACAATAGCCAGTCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGCTGGTCTGAGGAGTGTTTACTTGAGACAATAGCCAGTCTTAC  50

seq1  CCAGACAAGGGAATTCACAATGGCCCAGTGAATAGGTGGGTTTACCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAGGGAATTCACAATGGCCCAGTGAATAGGTGGGTTTACCATAA  100

seq1  AAGAATTAGGGAATCACCCTGAGACAGGTTTCTTAACTAGGCCCAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAGGGAATCACCCTGAGACAGGTTTCTTAACTAGGCCCAAAAAA  150

seq1  AAAAAACAACATAAATCAAATCAGGCATTTACAAGGAACCCCTGGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAACATAAATCAAATCAGGCATTTACAAGGAACCCCTGGTGGTG  200

seq1  GGCTTAACAATAGACTAGCATTAAACCTAGCTCCCTTCTTAGTGGCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACAATAGACTAGCATTAAACCTAGCTCCCTTCTTAGTGGCAGCG  250

seq1  GCCTGGTCCCCACCTTCTTTTGATTTATACATTCCTTATGTTTTGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCCCCACCTTCTTTTGATTTATACATTCCTTATGTTTTGTGTCA  300

seq1  CTATAACTTGGTGGTTGTATCTCTCCTCGTTTCTTGTTATTCTGTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTTGGTGGTTGTATCTCTCCTCGTTTCTTGTTATTCTGTATAAA  350

seq1  AAGTTTTGATACTCAACTTGACAATTACATTCAGATTCTACACAACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGATACTCAACTTGACAATTACATTCAGATTCTACACAACCTCT  400

seq1  CGTGTTGATCTTCCTGTCATTTATTTCGCCAACTCCTTGTCCACCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTGATCTTCCTGTCATTTATTTCGCCAACTCCTTGTCCACCTGCAA  450

seq1  CCAGAGACCCATTCTACGCAGGCAGGGACCAAAAAGGGTCTGCAGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCCATTCTACGCAGGCAGGGACCAAAAAGGGTCTGCAGCACTT  500

seq1  CCCCTTGGATATACATGGTGGGATCTTCCAAGCCTGCTGTGTTTTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGATATACATGGTGGGATCTTCCAAGCCTGCTGTGTTTTTACAT  550

seq1  GAGATGACCACCAAGAACAGCAGCAGCAGTGGAGGATAGGCAGCTGGAGC  600
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACCACTAAGAACAGCAGCAGCAGTGGAGGATAGGCAGCTGGAGC  600

seq1  CTAGAAGACAAGGTGTATGCTACATAGGGCAGAACTGGAGAGGTGACCCA  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGAAGACAAGGTGTATGCTACATAGGGCAGAACTGGAGAGGTGA-CCA  649

seq1  AGCTCTTGGAGGAGCCCAGAAGATCCTGAGTGGATTGAAGTCATTGGGTG  700
      |||||||||| || |||| |||||||||||||||||||||||| ||||||
seq2  AGCTCTTGGAAGAACCCA-AAGATCCTGAGTGGATTGAAGTCA-TGGGTG  697

seq1  GTTGGAGAA  709
      | |||||||
seq2  G-TGGAGAA  705