BAC Information

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BAC

Clone NameB6Ng01-033F06
Chromosome12 (Build37)
Map Location 5,607,797 - 5,746,205
singlet/doubletdoublet
Overlap genenone
Upstream geneItsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292
Downstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033F06.bB6Ng01-033F06.g
ACCDH862406DH862407
length931948
definitionDH862406|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F06, 5' end.DH862407|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,745,271 - 5,746,205)(5,607,797 - 5,608,753)
sequence
gaattccattgtgtagctgtaccacattttctttatccattcttcagttg
acggacatctaggttgtttagctattataaataaagctgctatgaacata
gttgagcaaatgtctttgtggaatgttggagcatcttttggatatatgcc
caggagtggtatagctgcgaccctttaatgcagttcctcatgttgtggtg
accccaaaaccataaaattatttcattgctgcttcagaactgcaactttg
ctactgttatgaatcatgatataaatatctgatatgcaggatttctcata
tgagatccccccaaaagggtcacaacctacagggtgagaagcacaggtct
agatgttcaaggatttactttgccttagctgttttgctttactgtgctta
ccatagttttattgatgtgatttcatttggctgtatttttcctatcaagg
ggtgaattcttaaaagcttgtcagttaaatctgattatatcctatataaa
ccccagttactttctcccactaatacataactaacttgataatgtgctta
gaagtcctgcgttgttcacttctcttcctgaagtgagggctgcacttcca
tttatgctcagcaggtacttgccctatggactcaggtgccactgctcaca
caggcaggcattaagtgaattaaatgtggtggatgatgaaaaaggtcctc
caatcagcttctctagggcactctgagcctctgcaggttacctccggagt
gtatgggatttaggaaggattaagggaaacttccaatccctaagaatgca
agatgacaaatgactaatgactgagaaaataaaactctttaagtaggtta
gaaaaatggccacatgacaagaaggtttttgttgttgttcttgttgttct
ctactgtctgataaaatcattcttatctact

gaattctttgtagaagtcaccttggttccgttggggggaaaattactgat
gttctttgaaaaggtagagtttgagggctttttttaaaaaaatgtagctg
aataggattttaagaaagcagaattataatgtggagtgaaaagaaaaagc
gagaggttgggtcagaaactgggttatcagtacaatgcagaaaggcaaaa
taaatgctaatagactgcacacgtgcccttcctgctagattagagaccag
gagggcgcctgctgaatgcagaccattgtatggccgcacagagcaaaggg
tctgggctattatccctcgctcggccccttgtgccacagatggttcttct
tgcttctcttatcagagctgtgcattcagtctctgcagcttgatctcttc
ctcactcctctgctcatacaaaaaacggattgatctgctgaaagagaggg
ctaggagaggggctgtctctgagggataggggaggtttcagaaacaaaag
gagtgggaggccaggtgcaggcatgggacagggcagtggatttagatgct
ctaggaggtgatggggacagccccggcagcaaccagcaaccaagtgttcc
ctaggccttaagctcggccacctgcaaaatggccttggcttttgtgctca
gggagacctaaagttctcaggtgttgaacaatcggagtgggctctccata
cctccctggggatatagagctgccacttccggcccagccttactgctccc
actgctcctgggacagttcctgcttctgaactggttgatagaaactgcaa
atccagcaaggataggccaagggcatagccgcagagagccactcctcgta
agtcgcccacccagaagatctgaagggacgagactctaggttgagtcctg
attccggctgagctgcatttgttgtctttcatcgaatcaatgaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5745271_5746205
seq2: B6Ng01-033F06.b_46_976 (reverse)

seq1  AGTAGATAGGAATGATTTTATCATGACAGTAAGAGAAACAACAAGAACAA  50
      |||||||| |||||||||||||| |||||| |||| ||||||||||||||
seq2  AGTAGATAAGAATGATTTTATCA-GACAGT-AGAG-AACAACAAGAACAA  47

seq1  CAACAAAAACCTTCTTGTCATGTGGCCATATTTCTAACCTACTTTAAAGA  100
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  CAACAAAAACCTTCTTGTCATGTGGCCATTTTTCTAACCTAC-TTAAAGA  96

seq1  GTTTTATTTTCTCAGTCATTAGTCA-TTGTCATCTTGCATTCTTAGGGAT  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  GTTTTATTTTCTCAGTCATTAGTCATTTGTCATCTTGCATTCTTAGGGA-  145

seq1  TTGGAAGTTTCCCTTAATCCTTCCTAAATCCCATACACTCCGGAGGTAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTTCCCTTAATCCTTCCTAAATCCCATACACTCCGGAGGTAAC  195

seq1  CTGCAGAGGCTCAGAGTGCCCTAGAGAAGCTGATTGGAGGACCTTTTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGCTCAGAGTGCCCTAGAGAAGCTGATTGGAGGACCTTTTTCA  245

seq1  TCATCCACCACATTTAATTCACTTAATGCCTGCCTGTGTGAGCAGTGGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACCACATTTAATTCACTTAATGCCTGCCTGTGTGAGCAGTGGCA  295

seq1  CCTGAGTCCATAGGGCAAGTACCTGCTGAGCATAAATGGAAGTGCAGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCCATAGGGCAAGTACCTGCTGAGCATAAATGGAAGTGCAGCCC  345

seq1  TCACTTCAGGAAGAGAAGTGAACAACGCAGGACTTCTAAGCACATTATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAGGAAGAGAAGTGAACAACGCAGGACTTCTAAGCACATTATCA  395

seq1  AGTTAGTTATGTATTAGTGGGAGAAAGTAACTGGGGTTTATATAGGATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTATGTATTAGTGGGAGAAAGTAACTGGGGTTTATATAGGATAT  445

seq1  AATCAGATTTAACTGACAAGCTTTTAAGAATTCACCCCTTGATAGGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATTTAACTGACAAGCTTTTAAGAATTCACCCCTTGATAGGAAAA  495

seq1  ATACAGCCAAATGAAATCACATCAATAAAACTATGGTAAGCACAGTAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCAAATGAAATCACATCAATAAAACTATGGTAAGCACAGTAAAG  545

seq1  CAAAACAGCTAAGGCAAAGTAAATCCTTGAACATCTAGACCTGTGCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGCTAAGGCAAAGTAAATCCTTGAACATCTAGACCTGTGCTTCT  595

seq1  CACCCTGTAGGTTGTGACCCTTTTGGGGGGATCTCATATGAGAAATCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTAGGTTGTGACCCTTTTGGGGGGATCTCATATGAGAAATCCTG  645

seq1  CATATCAGATATTTATATCATGATTCATAACAGTAGCAAAGTTGCAGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGATATTTATATCATGATTCATAACAGTAGCAAAGTTGCAGTTC  695

seq1  TGAAGCAGCAATGAAATAATTTTATGGTTTTGGGGTCACCACAACATGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCAATGAAATAATTTTATGGTTTTGGGGTCACCACAACATGAG  745

seq1  GAACTGCATTAAAGGGTCGCAGCTATACCACTCCTGGGCATATATCCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATTAAAGGGTCGCAGCTATACCACTCCTGGGCATATATCCAAA  795

seq1  AGATGCTCCAACATTCCACAAAGACATTTGCTCAACTATGTTCATAGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCCAACATTCCACAAAGACATTTGCTCAACTATGTTCATAGCAG  845

seq1  CTTTATTTATAATAGCTAAACAACCTAGATGTCCGTCAACTGAAGAATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTATAATAGCTAAACAACCTAGATGTCCGTCAACTGAAGAATGG  895

seq1  ATAAAGAAAATGTGGTACAGCTACACAATGGAATTC  935
      ||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAATGTGGTACAGCTACACAATGGAATTC  931


seq1: chr12_5607797_5608753
seq2: B6Ng01-033F06.g_67_1014

seq1  GAATTCTTTGTAGAAGTCACCTTGGTTCCGTTGGGGGGAAAATTACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTAGAAGTCACCTTGGTTCCGTTGGGGGGAAAATTACTGAT  50

seq1  GTTCTTTGAAAAGGTAGAGTTTGAGGGCTTTTTTTAAAAAAATGTAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGAAAAGGTAGAGTTTGAGGGCTTTTTTTAAAAAAATGTAGCTG  100

seq1  AATAGGATTTTAAGAAAGCAGAATTATAATGTGGAGTGAAAAGAAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATTTTAAGAAAGCAGAATTATAATGTGGAGTGAAAAGAAAAAGC  150

seq1  GAGAGGTTGGGTCAGAAACTGGGTTATCAGTACAATGCAGAAAGGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTGGGTCAGAAACTGGGTTATCAGTACAATGCAGAAAGGCAAAA  200

seq1  TAAATGCTAATAGACTGCACACGTGCCCTTCCTGCTAGATTAGAGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTAATAGACTGCACACGTGCCCTTCCTGCTAGATTAGAGACCAG  250

seq1  GAGGGCGCCTGCTGAATGCAGACCATTGTATGGCCGCACAGAGCAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGCCTGCTGAATGCAGACCATTGTATGGCCGCACAGAGCAAAGGG  300

seq1  TCTGGGCTATTATCCCTCGCTCGGCCCCTTGTGCCACAGATGGTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTATTATCCCTCGCTCGGCCCCTTGTGCCACAGATGGTTCTTCT  350

seq1  TGCTTCTCTTATCAGAGCTGTGCATTCAGTCTCTGCAGCTTGATCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTTATCAGAGCTGTGCATTCAGTCTCTGCAGCTTGATCTCTTC  400

seq1  CTCACTCCTCTGCTCATACAAAAAACGGATTGATCTGCTGAAAGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCTCTGCTCATACAAAAAACGGATTGATCTGCTGAAAGAGAGGG  450

seq1  CTAGGAGAGGGGCTGTCTCTGAGGGATAGGGGAGGTTTCAGAAACAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAGGGGCTGTCTCTGAGGGATAGGGGAGGTTTCAGAAACAAAAG  500

seq1  GAGTGGGAGGCCAGGTGCAGGCATGGGACAGGGCAGTGGATTTAGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGAGGCCAGGTGCAGGCATGGGACAGGGCAGTGGATTTAGATGCT  550

seq1  CTAGGAGGTGATGGGGACAGCCCCGGCAGCAACCAGCAACCAAGTGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGTGATGGGGACAGCCCCGGCAGCAACCAGCAACCAAGTGTTCC  600

seq1  CTAGGCCTTAAGCTCGGCCACCTGCAAAATGGCCTTGGCTTTTGTGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCTTAAGCTCGGCCACCTGCAAAATGGCCTTGGCTTTTGTGCTCA  650

seq1  GGGAGACCTAAAGTTCTCAGGTGTTGAACAATCGGAGTGGGCTCTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCTAAAGTTCTCAGGTGTTGAACAATCGGAGTGGGCTCTCCATA  700

seq1  CCTCCCTGGGGATATAGAGCTGCCACTTCCGGCCCAGCCTTACTGCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGGGGATATAGAGCTGCCACTTCCGGCCCAGCCTTACTGCTCCC  750

seq1  ACTGCTCCTGGGACAGTTCCTGCTTCTGAACTGGTTGATAGAAACTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCTGGGACAGTTCCTGCTTCTGAACTGGTTGATAGAAACTGCAA  800

seq1  ATCCAGCAAGGATAGGCCAAGGGCATAGCCGCAGAGAGCCACTCCTCGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCAAGGATAGGCCAAGGGCATAGCCGCAGAGAGCCACTCCTCGTA  850

seq1  AGTCAGCCCACCCAGAAGAACTGAAGGGACGAAGACTCTTAGGGTTGAGT  900
      |||| |||||||||||||| ||||||||||| |||||||   ||||||||
seq2  AGTC-GCCCACCCAGAAGATCTGAAGGGACG-AGACTCT--AGGTTGAGT  896

seq1  CCTGAGTCCGGGCTGAGCTGCATTTGTTGTCCTTTTCATCCGAATCAATG  950
      ||||| ||| |||||||||||||||||||||  |||||| ||||||||||
seq2  CCTGATTCC-GGCTGAGCTGCATTTGTTGTC--TTTCAT-CGAATCAATG  942

seq1  TAGGATG  957
       ||||||
seq2  -AGGATG  948


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