BAC Information

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BAC

Clone NameB6Ng01-033J12
Chromosome16 (Build37)12 (Build37)
Map Location 60,776,096 - 60,776,63537,768,146 - 37,768,916
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J12.bB6Ng01-033J12.g
ACCDH862596DH862597
length7211,015
definitionDH862596|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J12, 5' end.DH862597|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,776,096 - 60,776,635)(37,768,146 - 37,768,916)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttttggat
ttcttcagatctgttgttatgtctccctttttcatttctgatttgttaat
taggattttgtcccctgtgcc
gaattcaggacagattatcaaacagggcaaaaacctggaggtagggattg
atacagaagccatgagggaggtgctacttactgctttgctccctcatgac
ttactaatcctgctccttgttagaacacaggaccacacacccagggatgc
cttcactcacagtgggataggccatcaactatcaggtactaaataagaaa
atttcctccaggattgtctatagcatgaaatcatggatgcatttttaaat
tgtagttctctccacacagatgagctcatgtcaaattgacataaaactat
ccagcacaatcgaccccttatcaacttgacacacaaacatatcattatta
agccatatggcagttttaatagatttggttctcatagattcatgtgtttt
aatacctggccataaggagtggctttgttagaaggcatggccttatcaga
gtagatatggccatgttggaagatgtgcatctctgcttaagtgggctttg
aatttttcctatcctcatgctccacccagtgtggaatcagagacccctcc
tggtttcctgcaggagacagtctccttctggctgcctttggatcaagatg
taaaactctcagcacctttttcagcaacaagtctgcctgcaggctgcatg
cttcctgccatgacaataatggatgcaacctctgaaaatgaaaatgtcaa
tgtctttaaaatatccatctctttaagaatccaaaatctcttaactcatg
aaacactacagaaatctgaatatttatttggggataaaatgttaagaaat
ttttttgagtattcatttagaaaataactatctcactctgcttccaatat
tggcttaaaacttaaaattgactgtcagcttctcaagactgaaaatttca
agttgagtttctaggccagctggttctcaaagtgagttccaggacagcag
agagaaaccctgtctcaaagaaagatttcagtggtgaccatagatctaga
taccacaatccttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60776096_60776635
seq2: B6Ng01-033J12.b_225_765 (reverse)

seq1  GGCACA-GGGACAAAATCCTAATTAACAAAATCAGAAATG-AAAAGGGAG  48
      |||||| |||||||||||||||||||| |||||||||||| |||||||||
seq2  GGCACAGGGGACAAAATCCTAATTAAC-AAATCAGAAATGAAAAAGGGAG  49

seq1  ACATAACAACAGATCCTGAAGAAATCC-AAAACACCATCAGATCCTTCTA  97
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  ACATAACAACAGAT-CTGAAGAAATCCAAAAACACCATCAGATCCTTCTA  98

seq1  CAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAAT  148

seq1  TTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCAT  198

seq1  CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCT  248

seq1  CCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATC  298

seq1  AGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAA  348

seq1  ATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTAC  398

seq1  TCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC  447
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGAC  448

seq1  CAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCT  498

seq1  AACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACC  540
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACC  541

seq1: chr12_37768146_37768916
seq2: B6Ng01-033J12.g_317_1082

seq1  TTGTAGTTCTCTCCACACAGATGAGCTCATGTCAAATTGACATAAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTCTCTCCACACAGATGAGCTCATGTCAAATTGACATAAAACTA  50

seq1  TCCAGCACAATCGACCCCTTATCAACTTGACACACAAACATATCATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACAATCGACCCCTTATCAACTTGACACACAAACATATCATTATT  100

seq1  AAGCCATATGGCAGTTTTAATAGATTTGGTTCTCATAGATTCATGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATATGGCAGTTTTAATAGATTTGGTTCTCATAGATTCATGTGTTT  150

seq1  TAATACCTGGCCATAAGGAGTGGCTTTGTTAGAAGGCATGGCCTTATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGGCCATAAGGAGTGGCTTTGTTAGAAGGCATGGCCTTATCAG  200

seq1  AGTAGATATGGCCATGTTGGAAGATGTGCATCTCTGCTTAAGTGGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATATGGCCATGTTGGAAGATGTGCATCTCTGCTTAAGTGGGCTTT  250

seq1  GAATTTTTCCTATCCTCATGCTCCACCCAGTGTGGAATCAGAGACCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCCTATCCTCATGCTCCACCCAGTGTGGAATCAGAGACCCCTC  300

seq1  CTGGTTTCCTGCAGGAGACAGTCTCCTTCTGGCTGCCTTTGGATCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCCTGCAGGAGACAGTCTCCTTCTGGCTGCCTTTGGATCAAGAT  350

seq1  GTAAAACTCTCAGCACCTTTTTCAGCAACAAGTCTGCCTGCAGGCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCTCAGCACCTTTTTCAGCAACAAGTCTGCCTGCAGGCTGCAT  400

seq1  GCTTCCTGCCATGACAATAATGGATGCAACCTCTGAAAATGAAAATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCCATGACAATAATGGATGCAACCTCTGAAAATGAAAATGTCA  450

seq1  ATGTCTTTAAAATATCCATCTCTTTAAGAATCCAAAATCTCTTAACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTAAAATATCCATCTCTTTAAGAATCCAAAATCTCTTAACTCAT  500

seq1  GAAACACTACAGAAATCTGAATATTTTATTTGGGGATAAAATGTTAAGAA  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAACACTACAGAAATCTGAATA-TTTATTTGGGGATAAAATGTTAAGAA  549

seq1  ATTTTTTTGAGTATTCATTTAGAAAATAACTATCTCACTCTGCTTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGAGTATTCATTTAGAAAATAACTATCTCACTCTGCTTCCAAT  599

seq1  ATTGGCTTAAAACTTAAAATTGACTGTCAGC-TCTCAGAGACTGAAGATT  649
      ||||||||||||||||||||||||||||||| ||||| |||||||| |||
seq2  ATTGGCTTAAAACTTAAAATTGACTGTCAGCTTCTCA-AGACTGAAAATT  648

seq1  TCAAGTGTAG-TTCTAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  698
      ||||||  || ||||||||||| |||||   |||||||||||||||||||
seq2  TCAAGTTGAGTTTCTAGGCCAG-CTGGTTCTCAAAGTGAGTTCCAGGACA  697

seq1  GCAGAGAGAAACCCTGTCTCAAAAAGAAAGATTTCAAGTGTGAACCACTA  748
      ||||||||||||||||||||  ||||||||||||| ||||   |||| ||
seq2  GCAGAGAGAAACCCTGTCTC--AAAGAAAGATTTC-AGTGGTGACCA-TA  743

seq1  GATCTAGATACCACAATCCTTGT  771
      |||||||||||||||||||||||
seq2  GATCTAGATACCACAATCCTTGT  766