BAC Information

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BAC

Clone NameB6Ng01-034A03
Chromosome6 (Build37)12 (Build37)
Map Location 85,610,118 - 85,610,50514,703,425 - 14,704,535
singlet/doubletsingletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A03.bB6Ng01-034A03.g
ACCDH862892DH862893
length7471,098
definitionDH862892|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A03, 5' end.DH862893|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,610,118 - 85,610,505)(14,703,425 - 14,704,535)
sequence
gaattcctgatctttctaagactttcatcatgaacggtgttggattttgt
caaatgctttctcagcatctaatgagatgataatatggtttttgtctttg
agtttgtttatatactgggttacattgaaggatttctgtatattgaacca
ttcctgcatccatgggatgaagcctacttctttttcttttctcttctctt
cttttcttttttcttttttttcttttttttcttttttgggttttgaaaaa
atgtagccctagaactcactctgtagatgaggctggcctcaaactcagaa
atctgcctgcctcaccctcccaaatgcttggattaaaggcatgtgccacc
actgcctggctttggatgattgtttttgttgtgtgcttggattcagttta
cgagaacttattattgagtatttttgcattgatattcataagggaaattg
atctgaagttttctttctttgttgggcctttatgtagtttaggtatcaga
gtaattgtggcttcatagaatgaattgggtagagtattttctgtttctat
tttgtggaatattttgagtactggaattagatcttctttgaatgtctgat
agaactctgcactaaacccatctggtcccagggttttcttggttgggaga
ttattaatgactgcttctatttctttaggagttatatgattgtgtagatc
gttaatctgatcctgagtaaatttgatacctggtatctgtctagaaa
gaattcaggaaagctggaacaacaactgagttagggaagtatatgtttta
gaagcctgaggacctgagtttgattcccagaacccactcaactaagaaga
cctgggttgttgatacatattgtaaatctagtcctgagatggtagtgatt
ggagaagccttggagcttgctattcacccagcttactctgctttaatgag
ttgtaggccaaagtgagacactactgcaaatggtagatggcccttgagga
aaaacaccatgattgttttctggtgtccacatccatgaactcatgagcat
gtgcatagggaacccaaaatatcactcgagaattttgtgaagacaacagg
atagtactaatgatattaatggaaacaaatgaagagaattcaaagcccca
tttgtatatggacctgattatttacattattggtgagcttattatatgat
aattacttatgacctcatttaattgccatattccttctatgatgtttgta
ctataattgtttctaagacatcgatgaagaaatatagcacatagaaattc
acatcaaaatgtaatgtgtggggaaaaagggaattgaaacctcactcagt
ctaaacatgtgctcagtgctttagtgttgctgtgagattctgttgaatat
aagcacacaggattcagcatattgatgtgcatagtgagtagctggcttta
tggatgccatctgcatattagaaggccaatacagtgttcaaataagagat
gttgaatctaaatctccaagtttaggatcaggtcactctgtgacaatcac
acctaatgtcattcataacagtcccaaaagagagtaacgatattctgata
attcacgataaggggtaaataagaatccacattgcatgtgcatctcttta
taaaaggcactaccatgcccaaacaccgtcttccctaacctttctacaat
ttatatgagctttccttgatctgcggtgtcttagtaagttctgatttcat
acagtaacactgacactctggtctatagtgcatcttatcaaggtaaattg
tcttctcccaatgtggctatgaatatgacgagggagaagaggaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85610118_85610505
seq2: B6Ng01-034A03.b_408_792 (reverse)

seq1  TTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAGATCAGGTTAATGA  50
      ||||||||||||||||||||| |||| || | ||| |||||| |||| ||
seq2  TTTCTAGACAGATACCAGGTATCAAA-TTTACTCAGGATCAGATTAACGA  49

seq1  TCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTC  100
      |||| ||| || |||| | |||||||||||||||||||||||||||| ||
seq2  TCTACACAATCATATAACTCCTAAAGAAATAGAAGCAGTCATTAATAATC  99

seq1  TCCCAACCAAAAAAAAAGCCCAGGACCAAATGGGTTTAGTGCAGAGTTCT  150
      ||||||||  || |||| ||  |||||| |||||||||||||||||||||
seq2  TCCCAACC--AAGAAAACCCTGGGACCAGATGGGTTTAGTGCAGAGTTCT  147

seq1  ATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAACTATTCCAC  200
      ||||||| ||||||||||||||||| ||||| ||   |||| ||||||||
seq2  ATCAGACATTCAAAGAAGATCTAATTCCAGTACT---CAAAATATTCCAC  194

seq1  AAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAAT  250
      |||||||||||||||  |||||||||||| ||||||||||||||||||||
seq2  AAAATAGAAACAGAAAATACTCTACCCAATTCATTCTATGAAGCCACAAT  244

seq1  TACTCTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTCA  300
      ||||||||||||||||| ||| |||| ||||||||||| ||| |||||||
seq2  TACTCTGATACCTAAACTACATAAAGGCCCAACAAAGAAAGAAAACTTCA  294

seq1  GACCAATTTCCCTTATGAATATCGATGCAAAAATCCTCAATA--AAGTTC  348
      || |||||||||||||||||||| |||||||||| |||||||  ||||||
seq2  GATCAATTTCCCTTATGAATATCAATGCAAAAATACTCAATAATAAGTTC  344

seq1  TCGCTAACCGAATCCAAGAACACATC-AAAACAATCATCCA  388
      |||  ||| ||||||||| ||||| | ||||||||||||||
seq2  TCGTAAACTGAATCCAAGCACACAACAAAAACAATCATCCA  385

seq1: chr12_14703425_14704535
seq2: B6Ng01-034A03.g_66_1163 (reverse)

seq1  AATGTTCTGCTTCTCCCTCATTCATATTTCTAAGACAACACT-GGAGAAG  49
      |||||||  ||||||||||  |||||||  ||   | ||| | |||||||
seq2  AATGTTCCTCTTCTCCCTC-GTCATATTCATA--GCCACATTGGGAGAAG  47

seq1  ACATTTAACTTTGATAAGATGGCACCTATAGACCCAGAGTGTCAGTGTTA  99
      ||| || || |||||||||| ||| ||||||| |||||||||||||||||
seq2  ACAATTTACCTTGATAAGAT-GCA-CTATAGA-CCAGAGTGTCAGTGTTA  94

seq1  CTGTTAATGAAATCAGAACTTACTAAGACCACCGCAGATTCAAGGAAAGC  149
      ||||  |||||||||||||||||||||| ||||||||| |||||||||||
seq2  CTGT--ATGAAATCAGAACTTACTAAGA-CACCGCAGA-TCAAGGAAAGC  140

seq1  TCATATAAATGGTAGAAAGGTTAGGGAAGACGGTGTTTGGGCATGGTAGT  199
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TCATATAAATTGTAGAAAGGTTAGGGAAGACGGTGTTTGGGCATGGTAG-  189

seq1  TGCCTTTTTATAAAGAGATTGCACATGCAATGTGGATTCTTATTTACCCC  249
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCC-TTTTATAAAGAGA-TGCACATGCAATGTGGATTCTTATTTACCCC  237

seq1  TTATCGTGAATTATCAGAATATCGTTACTCTCTTTTTGGGACTGTTATGA  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTATCGTGAATTATCAGAATATCGTTACTCTC-TTTTGGGACTGTTATGA  286

seq1  ATGACATTAGGTGTGATTGTCACAGAGTGACCTGATCCTAAACTTGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTAGGTGTGATTGTCACAGAGTGACCTGATCCTAAACTTGGAGA  336

seq1  TTTAGATTCAACATCTCTTATTTGAACACTGTATTGGCCTTCTAATATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTCAACATCTCTTATTTGAACACTGTATTGGCCTTCTAATATGC  386

seq1  AGATGGCATCCATAAAGCCAGCTACTCACTATGCACATCAATATGCTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCATCCATAAAGCCAGCTACTCACTATGCACATCAATATGCTGAA  436

seq1  TCCTGTGTGCTTATATTCAACAGAATCTCACAGCAACACTAAAGCACTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGCTTATATTCAACAGAATCTCACAGCAACACTAAAGCACTGA  486

seq1  GCACATGTTTAGACTGAGTGAGGTTTCAATTCCCTTTTTCCCCACACATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTTTAGACTGAGTGAGGTTTCAATTCCCTTTTTCCCCACACATT  536

seq1  ACATTTTGATGTGAATTTCTATGTGCTATATTTCTTCATCGATGTCTTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGATGTGAATTTCTATGTGCTATATTTCTTCATCGATGTCTTAG  586

seq1  AAACAATTATAGTACAAACATCATAGAAGGAATATGGCAATTAAATGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTATAGTACAAACATCATAGAAGGAATATGGCAATTAAATGAGG  636

seq1  TCATAAGTAATTATCATATAATAAGCTCACCAATAATGTAAATAATCAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTAATTATCATATAATAAGCTCACCAATAATGTAAATAATCAGG  686

seq1  TCCATATACAAATGGGGCTTTGAATTCTCTTCATTTGTTTCCATTAATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATACAAATGGGGCTTTGAATTCTCTTCATTTGTTTCCATTAATAT  736

seq1  CATTAGTACTATCCTGTTGTCTTCACAAAATTCTCGAGTGATATTTTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTACTATCCTGTTGTCTTCACAAAATTCTCGAGTGATATTTTGGG  786

seq1  TTCCCTATGCACATGCTCATGAGTTCATGGATGTGGACACCAGAAAACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATGCACATGCTCATGAGTTCATGGATGTGGACACCAGAAAACAA  836

seq1  TCATGGTGTTTTTCCTCAAGGGCCATCTACCATTTGCAGTAGTGTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTTTTTCCTCAAGGGCCATCTACCATTTGCAGTAGTGTCTCAC  886

seq1  TTTGGCCTACAACTCATTAAAGCAGAGTAAGCTGGGTGAATAGCAAGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTACAACTCATTAAAGCAGAGTAAGCTGGGTGAATAGCAAGCTC  936

seq1  CAAGGCTTCTCCAATCACTACCATCTCAGGACTAGATTTACAATATGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTCTCCAATCACTACCATCTCAGGACTAGATTTACAATATGTAT  986

seq1  CAACAACCCAGGTCTTCTTAGTTGAGTGGGTTCTGGGAATCAAACTCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCCAGGTCTTCTTAGTTGAGTGGGTTCTGGGAATCAAACTCAGG  1036

seq1  TCCTCAGGCTTCTAAAACATATACTTCCCTAACTCAGTTGTTGTTCCAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGCTTCTAAAACATATACTTCCCTAACTCAGTTGTTGTTCCAGC  1086

seq1  TTTCCTGAATTC  1111
      ||||||||||||
seq2  TTTCCTGAATTC  1098