BAC Information

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BAC

Clone NameB6Ng01-034H03
Chromosome12 (Build37)1 (Build37)
Map Location 68,802,561 - 68,803,606179,874,135 - 179,874,223
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034H03.bB6Ng01-034H03.g
ACCDH863198DH863199
length1,025122
definitionDH863198|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H03, 5' end.DH863199|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,802,561 - 68,803,606)(179,874,135 - 179,874,223)
sequence
gaattcagctctccatcattcacagctcaagtaaaattcctgtgccttac
aatcaaacttctcttcagacagcctttatctgataatgaaaagcctgtta
caggaaattgcagtagatgaaataacctaaaacttgtgaggactaatgat
acaaacattaaggtgtaaagtatataaattgcaaatcagaataaaaggac
ctatttataattattttagaaaaaagtcagacattcaacataatatatct
tattgaatatcatcatggatgtaaattatttgttttccttgtatttatgt
taagagagattaagtgacaatctgggagaaaattcatttctatttcttta
gagacaagatggcttgggtgttcttttgtcttattttcacaaatgttatt
gtaatgttcactgatcaaaaaaatatcaggaattaagatgacattttttc
agacttccaaaactgaccagatctccaatctttcagcttaacattttcat
tgtaaatgtcaattattaattaattcaagagacagtaatattctttgtgt
ataaaatactattatttattcaataaatatcaaactctgtgactagaaaa
tattaatcattattctagacataaactgttgtaaagtaagaactgacgat
aggcttggaggtgagattgccattttctctccgatgactatcgaaggagg
gaccagccagaagcacacaggccagaggagctgtggagcagttgggacaa
tgtccttccagcctccacctctacccaggagctggggctgttccacagcc
ctttgtgtaatggtcctgtcagggagagcttgtctcctagaagtgctgac
atagcttagagtccacaggaggacaggctcagtcagagacagcagacact
aacaccagatattaccagttagtgaaaggcagctacaagaccttaccaac
agaaccaagcttcatggcatcattgaataagttccccacaacagcaatgc
tgaattccaaccagaaagtaagact
tggagattcttgagagagtatataaatgccagagccctgggaggtacagc
tattcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcctcctcttcctcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68802561_68803606
seq2: B6Ng01-034H03.b_49_1073 (reverse)

seq1  AGTCTTACTTTTCTTGTGTTGGGATATCCAGCACTTGCTGTTGTGGGGGA  50
      |||||||||    || || | ||| || ||||| |||||||||| |||||
seq2  AGTCTTACT----TTCTGGTTGGA-ATTCAGCA-TTGCTGTTGT-GGGGA  43

seq1  ACTAGTTTCCAATGATGCCATGAAGCTTTGGTTTCTGTTGGTAAGGTTCT  100
      |||  | | |||||||||||||||||||  | |||||||||||||| |||
seq2  ACT--TATTCAATGATGCCATGAAGCTT--GGTTCTGTTGGTAAGG-TCT  88

seq1  TGTGCTTGCCTTTCACTAACTGGTAATATCTGGTGTTAGTTGGTCTTGCT  150
      |||   ||||||||||||||||||||||||||||||||||  ||| ||||
seq2  TGTAGCTGCCTTTCACTAACTGGTAATATCTGGTGTTAGT--GTC-TGCT  135

seq1  GTCTCTGACTGGAGCCTGTCCTTCCTGTGGGGCCTCTAAGCCTATGTCAG  200
      |||||||||| |||||||||| ||||||  || ||||||| |||||||||
seq2  GTCTCTGACT-GAGCCTGTCC-TCCTGT--GGACTCTAAG-CTATGTCAG  180

seq1  CACTTCTAGGAGACAAGCTCTCCCCTGACAGGACCATTACACAAAGGGCT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACTTCTAGGAGACAAGCTCT-CCCTGACAGGACCATTACACAAAGGGCT  229

seq1  GTGGAACAGCCCCAGCTCCTGGGTAGAGGTGGAGGCTGGAAGGACATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAGCCCCAGCTCCTGGGTAGAGGTGGAGGCTGGAAGGACATTGT  279

seq1  CCCAACTGCTCCACAGCTCCTCTGGCCTGTGTGCTTCTGGCTGGTCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGCTCCACAGCTCCTCTGGCCTGTGTGCTTCTGGCTGGTCCCTC  329

seq1  CTTCGATAGTCATCGGAGAGAAAATGGCAATCTCACCTCCAAGCCTATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGATAGTCATCGGAGAGAAAATGGCAATCTCACCTCCAAGCCTATCG  379

seq1  TCAGTTCTTACTTTACAACAGTTTATGTCTAGAATAATGATTAATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTACTTTACAACAGTTTATGTCTAGAATAATGATTAATATTTT  429

seq1  CTAGTCACAGAGTTTGATATTTATTGAATAAATAATAGTATTTTATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCACAGAGTTTGATATTTATTGAATAAATAATAGTATTTTATACAC  479

seq1  AAAGAATATTACTGTCTCTTGAATTAATTAATAATTGACATTTACAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATTACTGTCTCTTGAATTAATTAATAATTGACATTTACAATGA  529

seq1  AAATGTTAAGCTGAAAGATTGGAGATCTGGTCAGTTTTGGAAGTCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAGCTGAAAGATTGGAGATCTGGTCAGTTTTGGAAGTCTGAAA  579

seq1  AAATGTCATCTTAATTCCTGATATTTTTTTGATCAGTGAACATTACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATCTTAATTCCTGATATTTTTTTGATCAGTGAACATTACAATA  629

seq1  ACATTTGTGAAAATAAGACAAAAGAACACCCAAGCCATCTTGTCTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTGAAAATAAGACAAAAGAACACCCAAGCCATCTTGTCTCTAAA  679

seq1  GAAATAGAAATGAATTTTCTCCCAGATTGTCACTTAATCTCTCTTAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAATGAATTTTCTCCCAGATTGTCACTTAATCTCTCTTAACAT  729

seq1  AAATACAAGGAAAACAAATAATTTACATCCATGATGATATTCAATAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGGAAAACAAATAATTTACATCCATGATGATATTCAATAAGAT  779

seq1  ATATTATGTTGAATGTCTGACTTTTTTCTAAAATAATTATAAATAGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGTTGAATGTCTGACTTTTTTCTAAAATAATTATAAATAGGTCC  829

seq1  TTTTATTCTGATTTGCAATTTATATACTTTACACCTTAATGTTTGTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTGATTTGCAATTTATATACTTTACACCTTAATGTTTGTATCA  879

seq1  TTAGTCCTCACAAGTTTTAGGTTATTTCATCTACTGCAATTTCCTGTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTCACAAGTTTTAGGTTATTTCATCTACTGCAATTTCCTGTAAC  929

seq1  AGGCTTTTCATTATCAGATAAAGGCTGTCTGAAGAGAAGTTTGATTGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTCATTATCAGATAAAGGCTGTCTGAAGAGAAGTTTGATTGTAA  979

seq1  GGCACAGGAATTTTACTTGAGCTGTGAATGATGGAGAGCTGAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGAATTTTACTTGAGCTGTGAATGATGGAGAGCTGAATTC  1025

seq1: chr1_179874135_179874223
seq2: B6Ng01-034H03.g_126_195 (reverse)

seq1  AGAAGAAGAAGAGGAGGAAGAAGAGAAGAAGAGGAGGAAGAGGGGGAAGA  50
      |||||| ||||||||||||||  |||||||||                 |
seq2  AGAAGAGGAAGAGGAGGAAGA--AGAAGAAGA-----------------A  31

seq1  GGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  89
      | |||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  70