BAC Information

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BAC

Clone NameB6Ng01-034K16
Chromosome12 (Build37)
Map Location 116,419,654 - 116,555,204
singlet/doubletdoublet
Overlap geneIgh, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58
Upstream geneEG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534
Downstream geneEG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034K16.bB6Ng01-034K16.g
ACCDH863353DH863354
length1,0281,071
definitionDH863353|Mus musculus domesticus DNA, BAC clone: B6Ng01-034K16, 5' end.DH863354|Mus musculus domesticus DNA, BAC clone: B6Ng01-034K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,554,160 - 116,555,204)(116,419,654 - 116,420,740)
sequence
gaattcatatgtgcatgagtccaattgtgtctggaagatggcctttcttt
ggagtcatgcaactgctctggaacatgtaatctgctcaattttaaaatag
tttactatatttttatctctactttactatatcgcctttgtaaattcctg
atagtataaatgtccaattctagtctttaagtttctaaaattcaatacac
tacaaaaaatactcaaatcttggaacatgtatgaatgagaacatgaagca
cttgtctaatggacatggatgacctactcagtgtatattttccagtttta
taagatatttatagttcagatagttcatcttttatcactgagtaatattc
acttttctatatatatgattatattattttttatttatgctttattggaa
atttggggagatctcttcctcgatatgctgtgaaaagaccatgagtatcg
tgttgtgaatgtatgagcatctgtataataagatgtagtcatttgagtac
atgtgtgagagggctattgctgggaaacaacataattctatttattattt
tttggccagttttaataggaaatgcttcatctcatgtaagtgtggttttt
gaagctcatttttagagacaatataggccctagtagacttcagataaatt
gataatatcaggttgtcaaattaccttataaatatttgtgtttatttcct
gtagactgtctgagagttgcctgaacaggtgaaaatgtcgactgatgagc
ttagcagtatgaggtaaatgccttagaattgaatgacagtagtcatcctc
tgagttaatagatccactttggtgcatatatcccctgaactcacatatag
aattaaaacattacacacagtaggagatattgatggcccacacaagctga
agtcttttatcattcatgcctttgaacacaaaaaatcttttttttctttt
tttataaggaatttcctcatttacatttcaagcaatccaaaggtccccaa
ccccccccatcctcatccacccctaccc
gaattcctggaatactgacatacaacaaaatgaggaaaaatgactgcagt
actcagagaaaagttaacagtccaagagaaattcacattaataaggaagt
agaaatcaagcaaacacattctgcaactcaatctgtttaccaaccagcat
gtgcctctgtttaacaggaggaagggagagaagaaatccctgtgacaagg
atcctaatgggaggagaacataagtacttagaaagctttatctctacatg
aatagctttccaacccaggctcctcccaattcctgggaagggcatgttag
taaagcatttttgaagttaatgtttcactaatgaaggatggttttagaat
gttatcttagtattaagagaaaccaatcacaccgtgtgaaatatgtgtat
acctttacttaaatatctgaagtatatttaaacatattaaaatgcatact
atgtaaattcagaatattcatttatattgtgcttaatcattcaggttccc
aaattagatgcacataacattgcaggatagatggaggacaggttggaagc
atattctattttccatacctggtcagaatccatgtgaattgtcagtttac
atagcatcaggaagtacttctatagagaaacatttatccctacattccag
cgtgctagaagtttgtattgtggcatttaggaatgcctaatgtgctggat
agtgctgtacttcatgctcaagaatatgggattctgatggcttaaataag
ttgcaatgcacaggagaccatgcctactttagtagtatggaaatacataa
acattttcctcttataatgtaatccattcataaatggcttgggctccata
agattgtaaataaaaattatgagctcattctctgagttaaacttatatta
ggatcatatacttgctgatcttcttgcagtgtgtgttcagtgctatcttg
aaaatatgacatatagattgatttttttttattttatttcatgtgaatat
tttccttttcttcaagcttggctcctttcattgaacaaaccttaggcaat
tctttggatcgtcttatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116554160_116555204
seq2: B6Ng01-034K16.b_49_1076 (reverse)

seq1  GGGTAGG---GGATTGGGGGGGTGGGTATGGGGGACCTTTGGGATAGCAT  47
      |||||||   ||||  ||  || |||  | |||||||||| |||| || |
seq2  GGGTAGGGGTGGATGAGGATGGGGGGGGTTGGGGACCTTT-GGATTGC-T  48

seq1  TGAAAATGTAAATGAGGAAAATACCTAATAAAAAAAAGAAAAAAAAAGAA  97
      || |||||||||||||| |||| ||| || ||||||||||||||||   |
seq2  TG-AAATGTAAATGAGG-AAATTCCTTAT-AAAAAAAGAAAAAAAA--GA  93

seq1  TATATTGTGTTCAAAAGGCATGAAATGATAAAAGACTTTCAGCCTGGTGT  147
      | | |||||||| ||||||||| ||||||||||||| ||||| || ||||
seq2  TTTTTTGTGTTC-AAAGGCATG-AATGATAAAAGAC-TTCAG-CTTGTGT  139

seq1  GGGCCATCAATTATTCCTCCTACCTGTGTTGTAATTGTTTTAATTCTTAT  197
      |||||||||| |||  |||||| ||||| ||||| ||||||||||| |||
seq2  GGGCCATCAA-TAT--CTCCTA-CTGTG-TGTAA-TGTTTTAATTC-TAT  182

seq1  ATGGTGAGTTCAGGGGATATATGCACCAAAGTGGATCTATTAACCTCAGA  247
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AT-GTGAGTTCAGGGGATATATGCACCAAAGTGGATCTATTAA-CTCAGA  230

seq1  GGATGACTACTGTCATTCAATTCTAAGGCATTTACCTCATACTGCTAAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTACTGTCATTCAATTCTAAGGCATTTACCTCATACTGCTAAGC  280

seq1  TCATCAGTCGACATTTTCACCTGTTCAGGCAACTCTCAGACAGTCTACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTCGACATTTTCACCTGTTCAGGCAACTCTCAGACAGTCTACAG  330

seq1  GGAATAAACACAAATATTTATAAGGTAATTTGACAACCTGATATTATCAA  397
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAACACAAATATTTATAAGGTAATTTGACAACCTGATATTATCAA  380

seq1  TTTATCTGAAGTCTACTAGGGCCTATATTGTCTCTAAAAATGAGCTTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGAAGTCTACTAGGGCCTATATTGTCTCTAAAAATGAGCTTCAA  430

seq1  AAACCACACTTACATGAGATGAAGCATTTCCTATTAAAACTGGCCAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACTTACATGAGATGAAGCATTTCCTATTAAAACTGGCCAAAAA  480

seq1  ATAATAAATAGAATTATGTTGTTTCCCAGCAATAGCCCTCTCACACATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAGAATTATGTTGTTTCCCAGCAATAGCCCTCTCACACATGT  530

seq1  ACTCAAATGACTACATCTTATTATACAGATGCTCATACATTCACAACACG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATGACTACATCTTATTATACAGATGCTCATACATTCACAACACG  580

seq1  ATACTCATGGTCTTTTCACAGCATATCGAGGAAGAGATCTCCCCAAATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATGGTCTTTTCACAGCATATCGAGGAAGAGATCTCCCCAAATTT  630

seq1  CCAATAAAGCATAAATAAAAAATAATATAATCATATATATAGAAAAGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGCATAAATAAAAAATAATATAATCATATATATAGAAAAGTGA  680

seq1  ATATTACTCAGTGATAAAAGATGAACTATCTGAACTATAAATATCTTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTCAGTGATAAAAGATGAACTATCTGAACTATAAATATCTTATA  730

seq1  AAACTGGAAAATATACACTGAGTAGGTCATCCATGTCCATTAGACAAGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAAATATACACTGAGTAGGTCATCCATGTCCATTAGACAAGTG  780

seq1  CTTCATGTTCTCATTCATACATGTTCCAAGATTTGAGTATTTTTTGTAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTTCTCATTCATACATGTTCCAAGATTTGAGTATTTTTTGTAGT  830

seq1  GTATTGAATTTTAGAAACTTAAAGACTAGAATTGGACATTTATACTATCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAATTTTAGAAACTTAAAGACTAGAATTGGACATTTATACTATCA  880

seq1  GGAATTTACAAAGGCGATATAGTAAAGTAGAGATAAAAATATAGTAAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTACAAAGGCGATATAGTAAAGTAGAGATAAAAATATAGTAAACT  930

seq1  ATTTTAAAATTGAGCAGATTACATGTTCCAGAGCAGTTGCATGACTCCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTGAGCAGATTACATGTTCCAGAGCAGTTGCATGACTCCAA  980

seq1  AGAAAGGCCATCTTCCAGACACAATTGGACTCATGCACATATGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCCATCTTCCAGACACAATTGGACTCATGCACATATGAATTC  1028

seq1: chr12_116419654_116420740
seq2: B6Ng01-034K16.g_71_1141

seq1  GAATTCCTGGAATACTGACATACAACAAAATGAGGAAAAATGACTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAATACTGACATACAACAAAATGAGGAAAAATGACTGCAGT  50

seq1  ACTCAGAGAAAAGTTAACAGTCCAAGAGAAATTCACATTAATAAGGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAAAAGTTAACAGTCCAAGAGAAATTCACATTAATAAGGAAGT  100

seq1  AGAAATCAAGCAAACACATTCTGCAACTCAATCTGTTTACCAACCAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAGCAAACACATTCTGCAACTCAATCTGTTTACCAACCAGCAT  150

seq1  GTGCCTCTGTTTAACAGGAGGAAGGGAGAGAAGAAATCCCTGTGACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTGTTTAACAGGAGGAAGGGAGAGAAGAAATCCCTGTGACAAGG  200

seq1  ATCCTAATGGGAGGAGAACATAAGTACTTAGAAAGCTTTATCTCTACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATGGGAGGAGAACATAAGTACTTAGAAAGCTTTATCTCTACATG  250

seq1  AATAGCTTTCCAACCCAGGCTCCTCCCAATTCCTGGGAAGGGCATGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTTCCAACCCAGGCTCCTCCCAATTCCTGGGAAGGGCATGTTAG  300

seq1  TAAAGCATTTTTGAAGTTAATGTTTCACTAATGAAGGATGGTTTTAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTTTGAAGTTAATGTTTCACTAATGAAGGATGGTTTTAGAAT  350

seq1  GTTATCTTAGTATTAAGAGAAACCAATCACACCGTGTGAAATATGTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTTAGTATTAAGAGAAACCAATCACACCGTGTGAAATATGTGTAT  400

seq1  ACCTTTACTTAAATATCTGAAGTATATTTAAACATATTAAAATGCATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTACTTAAATATCTGAAGTATATTTAAACATATTAAAATGCATACT  450

seq1  ATGTAAATTCAGAATATTCATTTATATTGTGCTTAATCATTCAGGTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATTCAGAATATTCATTTATATTGTGCTTAATCATTCAGGTTCCC  500

seq1  AAATTAGATGCACATAACATTGCAGGATAGATGGAGGACAGGTTGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATGCACATAACATTGCAGGATAGATGGAGGACAGGTTGGAAGC  550

seq1  ATATTCTATTTTCCATACCTGGTCAGAATCCATGTGAATTGTCAGTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTATTTTCCATACCTGGTCAGAATCCATGTGAATTGTCAGTTTAC  600

seq1  ATAGCATCAGGAAGTACTTCTATAGAGAAACATTTATCCCTACATTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATCAGGAAGTACTTCTATAGAGAAACATTTATCCCTACATTCCAG  650

seq1  CGTGCTAGAAGTTTGTATTGTGGCATTTAGGAATGCCTAATGTGCTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTAGAAGTTTGTATTGTGGCATTTAGGAATGCCTAATGTGCTGGAT  700

seq1  AGTGCTGTACTTCATGCTCAAGAATATGGGATTCTGATGGCTTAAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTACTTCATGCTCAAGAATATGGGATTCTGATGGCTTAAATAAG  750

seq1  TTGCAATGCACAGGAGACCATGCCTACTTTAGTAGTATGGAAATACATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGCACAGGAGACCATGCCTACTTTAGTAGTATGGAAATACATAA  800

seq1  ACATTTTCCTCTTATAATGTAATCCATTCATAAAT-GCCTGGGCTCCATA  849
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  ACATTTTCCTCTTATAATGTAATCCATTCATAAATGGCTTGGGCTCCATA  850

seq1  AGATTGTAAATAAAAAATATGAGCTCATTCTCTGAAGTTAAACTTATATT  899
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  AGATTGTAAATAAAAATTATGAGCTCATTCTCTG-AGTTAAACTTATATT  899

seq1  AGGATCATAATACTTGCTGATC-TCTTGCAGTGTGTGTTCAGGTGCTATC  948
      |||||||| ||||||||||||| |||||||||||||||||| ||||||| 
seq2  AGGATCAT-ATACTTGCTGATCTTCTTGCAGTGTGTGTTCA-GTGCTAT-  946

seq1  CTTGAAAATATGAACATATAGATTGATTTTTTTTATTTTTATTTTTCAGT  998
      |||||||||||| |||||||||||||||||||||  |||||  ||||| |
seq2  CTTGAAAATATG-ACATATAGATTGATTTTTTTTTATTTTA--TTTCA-T  992

seq1  GTGAATATTTTTCCCTTTTCTTCTAGCTTGGCTCTCTTTTCATTGATCAT  1048
      |||||||||||  |||||||||| |||||||  ||| |||||||||  | 
seq2  GTGAATATTTT--CCTTTTCTTCAAGCTTGG--CTCCTTTCATTGA--AC  1036

seq1  AAACCTATGGCAATTTCTTTTGGATCTGTCTATATTTGA  1087
      ||||||  |||||||   |||||||| |||| |||||||
seq2  AAACCTTAGGCAATT--CTTTGGATC-GTCT-TATTTGA  1071