BAC Information

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BAC

Clone NameB6Ng01-035B24
Chromosome12 (Build37)
Map Location 115,045,354 - 115,063,037
singlet/doubletdoublet
Overlap geneIgh, Ighv2-7
Upstream geneLOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785
Downstream geneLOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035B24.bB6Ng01-035B24.g
ACCDH863681DH863682
length1,081907
definitionDH863681|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B24, 5' end.DH863682|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,061,943 - 115,063,037)(115,045,354 - 115,046,274)
sequence
gaattcaaattataaacaacatggagatcaggcagggccagtgacccata
aagttgatgactttcaatctccccatcatcctcacacaaaccctatgtaa
aatgtgtgtgagactccagctctgagacatgaggccaaggtagctactgg
tacttgcttagctttagttagatggaaagaggtcctaacccactaagtgt
gtaacatcttttttctttcttcctctgtatttttgatgctttattttgta
tatttcccctagagttaatttgggcaaatgatttttgttttaacacatta
ctcacctttccttcccccagttttctaaggatcttatttacactgctgtt
ctagaaacatgatgttcaggatggttgactcattcagagtccacatttga
agctcagaagaagtcagctgtggtacctaaaacctggatagaacattctt
ctcaatgacgttccggggtcatatttattatggcactataaaagagtagg
tgtgtattagaagccaaggaatgatgactgttcaatcaaagcatgatgcc
acttggaaaatgatctaaattgctcaaattgtcatggaattctgttgcct
gtactaatagcacagctgtggcagcaacacattggtgtcctatgagttct
ggaaaaaatggaaagagagggttctgattttcaaggttcacccaaacaga
tcattcaacaaattgattctactttatattttctgttctgccatcatcag
gtctattcaaatgtgtgaggaccagcatcctaccataactatattagtta
atgacaggtaactggaaactgtggctcagacaggctgatgcctgggactg
acaatgtcttggatttcatctcaatttccaacggcatctggatgtttaat
tcagcatacattatcgcagtcaaatgaatttcagtcaggttggcaggaaa
caggctctgaatgagtagatttcagtcagcatggagaagcagcatggaca
aattaggcttctcttgatgataggtaggaagtgcttcacagcttgctgat
gagatctgcatgagtatgtgagctttctcca
gaattcacacctctaacattaaaaccgatgctcatacagcattggccaga
acttcactggttgtaaagagatactgagaaatccttgttgtacctcagca
caccctgctggtcatgacatccctgtagggaagcttttgttcaggttcac
actggactttttttcactgtgtatctggcacagtggtacacagccgtgtc
ttcactttgcagactgctcattttaaagaaaacttggctcttagaggtgt
ccctgctgacactcagtcgggaactgagagctggagtatagtatatgctt
ccaccagaccatattcctcccaaccattccaatccctttctcggaggctt
gcgaaaccaatgtacaccatagctacttaatgagaacccagagacagtgc
aggtgagagacagagtctgtgatggctgcacaaggtcaggtcctgactcc
ttcatctgcacttgtgacaggacacctggggacaaacaacatcaccatca
gacatacataccatgaatgccatacctgggtccctctcctaaaactctga
aacacttacagcttggaaaggtcaccaggcagaggagcagccccaggaca
gccatgctctgatggaggctctatgagaagaggatggggcttctcatctt
tgtgtgagcttttatcctctgcctgagggctgctttgcattggggggggg
gcggtcctgaggggataaaaaggaagcacagttcacagcttccagcttcc
tctccatgtgcctttgattgcctctgtttgtttgtgtgtttttcttttag
aagaaaatggaattgaaagtagaagttttccctgaactgttgatttcaat
caaataacacaaatcactgtgcatgccttggaagcaaaaagtaataaagg
ggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115061943_115063037
seq2: B6Ng01-035B24.b_41_1121 (reverse)

seq1  TGGAGAAAGCTCACATCATCATGCCAGAATCTTCATCCAAGCAAGCTGTG  50
      ||||||||||||||||  ||||| ||| ||| |||||  |||||||||||
seq2  TGGAGAAAGCTCACATACTCATG-CAG-ATC-TCATC--AGCAAGCTGTG  45

seq1  AGGCCACTTCCTACACTAATCATCAAAGGAGAGCCTTATTTGTCCATGCT  100
      | | |||||||||| || ||||||||  || ||||| |||||||||||| 
seq2  AAG-CACTTCCTAC-CT-ATCATCAAGAGA-AGCCTAATTTGTCCATGC-  90

seq1  TGCTTTCTTCCATGGCTGAACTGAAATCTACTCATTCAGAGCCTGTTTCC  150
      |||||   ||||| |||| |||||||||||||||||||||||||||||||
seq2  TGCTT--CTCCAT-GCTG-ACTGAAATCTACTCATTCAGAGCCTGTTTCC  136

seq1  TGCAAACCTGACTGAAACTCATTTGACTGCGATAATTGTATGCTGAA-TA  199
      ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||
seq2  TGCCAACCTGACTGAAATTCATTTGACTGCGATAA-TGTATGCTGAATTA  185

seq1  AACATCAAGATG-CGTTGGAAATTGAGATGAAATCCAAGACATTGTCAGT  248
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AACATCCAGATGCCGTTGGAAATTGAGATGAAATCCAAGACATTGTCAGT  235

seq1  CCCAGGCATCAGCCTGTCTGGAGCACAGTTTCCAGTTACCCTGTCATTAA  298
      ||||||||||||||||||||   ||||||||||||||| |||||||||||
seq2  CCCAGGCATCAGCCTGTCTGAGCCACAGTTTCCAGTTA-CCTGTCATTAA  284

seq1  CTAATATAGTTATGGTAGGATGCTGGTCCTCACACATTTGAATAGACCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAGTTATGGTAGGATGCTGGTCCTCACACATTTGAATAGACCTG  334

seq1  ATGATGGCAGAACAGAAAATATAAAGTAGAATCAATTTGTTGAATGATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCAGAACAGAAAATATAAAGTAGAATCAATTTGTTGAATGATCT  384

seq1  GTTTGGGTGAACCTTGAAAATCAGAACCCTCTCTTTCCATTTTTTCCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTGAACCTTGAAAATCAGAACCCTCTCTTTCCATTTTTTCCAGA  434

seq1  ACTCATAGGACACCAATGTGTTGCTGCCACAGCTGTGCTATTAGTACAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGGACACCAATGTGTTGCTGCCACAGCTGTGCTATTAGTACAGG  484

seq1  CAACAGAATTCCATGACAATTTGAGCAATTTAGATCATTTTCCAAGTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAATTCCATGACAATTTGAGCAATTTAGATCATTTTCCAAGTGGC  534

seq1  ATCATGCTTTGATTGAACAGTCATCATTCCTTGGCTTCTAATACACACCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTTTGATTGAACAGTCATCATTCCTTGGCTTCTAATACACACCT  584

seq1  ACTCTTTTATAGTGCCATAATAAATATGACCCCGGAACGTCATTGAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTATAGTGCCATAATAAATATGACCCCGGAACGTCATTGAGAAG  634

seq1  AATGTTCTATCCAGGTTTTAGGTACCACAGCTGACTTCTTCTGAGCTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTATCCAGGTTTTAGGTACCACAGCTGACTTCTTCTGAGCTTCA  684

seq1  AATGTGGACTCTGAATGAGTCAACCATCCTGAACATCATGTTTCTAGAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGACTCTGAATGAGTCAACCATCCTGAACATCATGTTTCTAGAAC  734

seq1  AGCAGTGTAAATAAGATCCTTAGAAAACTGGGGGAAGGAAAGGTGAGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTAAATAAGATCCTTAGAAAACTGGGGGAAGGAAAGGTGAGTAA  784

seq1  TGTGTTAAAACAAAAATCATTTGCCCAAATTAACTCTAGGGGAAATATAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAAACAAAAATCATTTGCCCAAATTAACTCTAGGGGAAATATAC  834

seq1  AAAATAAAGCATCAAAAATACAGAGGAAGAAAGAAAAAAGATGTTACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGCATCAAAAATACAGAGGAAGAAAGAAAAAAGATGTTACACA  884

seq1  CTTAGTGGGTTAGGACCTCTTTCCATCTAACTAAAGCTAAGCAAGTACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGGTTAGGACCTCTTTCCATCTAACTAAAGCTAAGCAAGTACCA  934

seq1  GTAGCTACCTTGGCCTCATGTCTCAGAGCTGGAGTCTCACACACATTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTACCTTGGCCTCATGTCTCAGAGCTGGAGTCTCACACACATTTTA  984

seq1  CATAGGGTTTGTGTGAGGATGATGGGGAGATTGAAAGTCATCAACTTTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGTTTGTGTGAGGATGATGGGGAGATTGAAAGTCATCAACTTTAT  1034

seq1  GGGTCACTGGCCCTGCCTGATCTCCATGTTGTTTATAATTTGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACTGGCCCTGCCTGATCTCCATGTTGTTTATAATTTGAATTC  1081

seq1: chr12_115045354_115046274
seq2: B6Ng01-035B24.g_65_971

seq1  GAATTCACACCTCTAACATTAAAACCGATGCTCATACAGCATTGGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCTCTAACATTAAAACCGATGCTCATACAGCATTGGCCAGA  50

seq1  ACTTCACTGGTTGTAAAGAGATACTGAGAAATCCTTGTTGTACCTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGGTTGTAAAGAGATACTGAGAAATCCTTGTTGTACCTCAGCA  100

seq1  CACCCTGCTGGTCATGACATCCCTGTAGGGAAGCTTTTGTTCAGGTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCTGGTCATGACATCCCTGTAGGGAAGCTTTTGTTCAGGTTCAC  150

seq1  ACTGGACTTTTTTTCACTGTGTATCTGGCACAGTGGTACACAGCCGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTTTTTTTCACTGTGTATCTGGCACAGTGGTACACAGCCGTGTC  200

seq1  TTCACTTTGCAGACTGCTCATTTTAAAGAAAACTTGGCTCTTAGAGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGCAGACTGCTCATTTTAAAGAAAACTTGGCTCTTAGAGGTGT  250

seq1  CCCTGCTGACACTCAGTCGGGAACTGAGAGCTGGAGTATAGTATATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGACACTCAGTCGGGAACTGAGAGCTGGAGTATAGTATATGCTT  300

seq1  CCACCAGACCATATTCCTCCCAACCATTCCAATCCCTTTCTCGGAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGACCATATTCCTCCCAACCATTCCAATCCCTTTCTCGGAGGCTT  350

seq1  GCGAAACCAATGTACACCATAGCTACTTAATGAGAACCCAGAGACAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAACCAATGTACACCATAGCTACTTAATGAGAACCCAGAGACAGTGC  400

seq1  AGGTGAGAGACAGAGTCTGTGATGGCTGCACAAGGTCAGGTCCTGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGAGACAGAGTCTGTGATGGCTGCACAAGGTCAGGTCCTGACTCC  450

seq1  TTCATCTGCACTTGTGACAGGACACCTGGGGACAAACAACATCACCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGCACTTGTGACAGGACACCTGGGGACAAACAACATCACCATCA  500

seq1  GACATACATACCATGAATGCCATACCTGGGTCCCTCTCCTAAAACTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACATACCATGAATGCCATACCTGGGTCCCTCTCCTAAAACTCTGA  550

seq1  AACACTTACAGCTTGGAAAGGTCACCAGGCAGAGGAGCAGCCCCAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTACAGCTTGGAAAGGTCACCAGGCAGAGGAGCAGCCCCAGGACA  600

seq1  GCCATGCTCTGATGGAGGCTCTATGAGAAGAGGATGGGGCTTCTCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTCTGATGGAGGCTCTATGAGAAGAGGATGGGGCTTCTCATCTT  650

seq1  TGTGTGAGCTTTTATCCTCTGCCTGAGGGCTGCTTTGCATTGGGGGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGCTTTTATCCTCTGCCTGAGGGCTGCTTTGCATTGGGGGGGGG  700

seq1  GCGGTCCTGAGGGGAT-AAAAGGAAGCACAGTTCACAGCTTCCAGCTTCC  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCGGTCCTGAGGGGATAAAAAGGAAGCACAGTTCACAGCTTCCAGCTTCC  750

seq1  TCTCCATGTGCCTTTGATTGCCTCTGTTTTGTTTTGTGTTGTTTTTCTTT  799
      |||||||||||||||||||||||||||||   |||||| |||||||| ||
seq2  TCTCCATGTGCCTTTGATTGCCTCTGTTT--GTTTGTG-TGTTTTTC-TT  796

seq1  TTAGAAG-AAATGGAATTGAAAAGTAAGGAAGTTTTCCCTGAAACTGTTT  848
      ||||||| ||||||||||| ||||||  ||||||||||||| ||||||| 
seq2  TTAGAAGAAAATGGAATTG-AAAGTA--GAAGTTTTCCCTG-AACTGTT-  841

seq1  GGATTTCCAATTCAAAATAAACACAAATCCAACTGTGCATGCCTTGGAAG  898
       ||||||  | |||||   ||||||||||  |||||||||||||||||||
seq2  -GATTTC--AATCAAA--TAACACAAATC--ACTGTGCATGCCTTGGAAG  884

seq1  CAAAAAGTAAATAAGGGGTGGGG  921
      ||||||||||  |||||||||||
seq2  CAAAAAGTAATAAAGGGGTGGGG  907