BAC Information

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BAC

Clone NameB6Ng01-035I12
Chromosome12 (Build37)
Map Location 49,450,224 - 49,576,969
singlet/doubletdoublet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035I12.bB6Ng01-035I12.g
ACCDH863971DH863972
length867927
definitionDH863971|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I12, 5' end.DH863972|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,576,086 - 49,576,969)(49,450,224 - 49,451,231)
sequence
gaattcagcatttgaaagcaagtattattttgaagaatgggagaaatact
tgactatctgagttagaagggttgccaaaatgttttggaaacctagttga
tgctggagcacaaatttatagtgacatctggatttaactgcacaggtgca
aaggaagacagataattagattcgacctgatctaggattttgccaaacat
gtgctgaaaggacacagcgacaaaacactatacacatttagcagatcttg
gtgaaaataaagcacttattatccttctgaaatgactgggagataggtgg
cagtataatgatgcatgcttttttgttaaaatttactaattctgtatgct
tgattaataaatgtgtagcttatatgagaagcaagtcagggaatcacatt
ttagtacttaggggatttgaagtagctaaaagcagttgtaaatttatata
aattctttttataatatagatcagaattgttggtttccacatgatgttac
tcactcttacctggaaaggggatttccttggggcatatgtggtgcataaa
cacagtgccttcccacactgagttacatagctgcattcagtcttggaagt
catctttgtgaatagctcattatccatttgaaacttcttctgaatatttc
ttatgcaacatgcaccgctcttgcctttatcccaagcaagccaaaattca
tcatcagaaaaacatgtggctttccaaactgggtcaaatctaagcttttc
aaggactgctactacatactaagtttatgaaaaactttatttcaccttgc
tgggtgaaaatatcatttatggttattactcaagctcaaaactgaattct
caaggcatcagaatcca
gaattctatgtaaatgaatctcaaaggcattgtaataacatataatagaa
atgactttctcacctggtaaatgactttctaaaaggccagtggtggcaca
aaattcaattattgaaaatctgtgagtttctcaactctcttctagttagt
acgccttttttttttcttgataataagaaagtgtttgtaacatagtaatg
gagaaaaacttatggaaagctgatataaagaactgagacatgagtgggtc
ttattatattgtaaatctgtcactttccttcaaattcctaacaggttatt
tctctgtcaagaaatgaccaagaaacatcatgcgtacttattatattaca
ttacaagggtattctctatgaaagaaaataaactccttttcttcagctta
ttaagattatatttctttgctttatgacatttcattgcatgcagaggatg
ctatcaaacatctttttttttcttttttttcttttctttttctttttttt
ttttttttgccagatagtgcacgatgccagaccaacaaagtgatttcatc
cagtagcagcttggtgagcaattgagtatactaagtgtctttatggaact
gtgtatgagcagttactttataaaagcaagagtggttgcccttggcagaa
aaatccccacaagccaatcctagaataggtggtggccagtcattttcagt
ggatttgccttcacattatagtagagccaccaaacttcctcccacccttg
catttgttactgattttatacctagccactcctagacatttgtgaatttc
tggatcatttcagcttcctttcttcaatatttgaaaaaataacagttcca
cccctgcccttttataccctagccccctcttctcctctcttcctctcttc
cttccccctcccccttttccccctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49576086_49576969
seq2: B6Ng01-035I12.b_44_910 (reverse)

seq1  TGGATTCCTGATGCCTTTGGAGAAATTCAGTTTTTGAGCTTTGAGGTAAT  50
      |||||| ||||||||||  ||| ||||||| |||||||| |||| |||||
seq2  TGGATT-CTGATGCCTT--GAG-AATTCAG-TTTTGAGC-TTGA-GTAAT  43

seq1  AACCATTAAATGATATTTTCTACCCAGCAAGGTGGAAATAAAGTTTTTTC  100
      ||||| |||||||||||||| |||||||||||| ||||||||||||||  
seq2  AACCA-TAAATGATATTTTC-ACCCAGCAAGGT-GAAATAAAGTTTTT--  88

seq1  AATAAACTTAGTATGTAGTAGCAGGTCCTTGAAAAGCTTAGATTATGACC  150
       |||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  CATAAACTTAGTATGTAGTAGCA-GTCCTTGAAAAGCTTAGATT-TGACC  136

seq1  CAGTTTGGAAAAGCCACATGGTTTTCTGGATGATGAATATTGGCTTGCTT  200
      |||||||| ||||||||||| |||||| |||||||||| |||||||||||
seq2  CAGTTTGG-AAAGCCACATGTTTTTCT-GATGATGAATTTTGGCTTGCTT  184

seq1  GGGATAAAGGCAAGAGCGGTGCATGTTGCATAAGAAATTATTCAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGATAAAGGCAAGAGCGGTGCATGTTGCATAAGAAA-TATTCAGAAGAA  233

seq1  GTTTCAAATGGATAATGAGCTATTCACAAAGATGACTTCCAAGACTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATGGATAATGAGCTATTCACAAAGATGACTTCCAAGACTGAAT  283

seq1  GCAGCTATGTAACTCAGTGTGGGAAGGCACTGTGTTTATGCACCACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATGTAACTCAGTGTGGGAAGGCACTGTGTTTATGCACCACATAT  333

seq1  GCCCCAAGGAAATCCCCTTTCCAGGTAAGAGTGAGTAACATCATGTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGGAAATCCCCTTTCCAGGTAAGAGTGAGTAACATCATGTGGAA  383

seq1  ACCAACAATTCTGATCTATATTATAAAAAGAATTTATATAAATTTACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAATTCTGATCTATATTATAAAAAGAATTTATATAAATTTACAAC  433

seq1  TGCTTTTAGCTACTTCAAATCCCCTAAGTACTAAAATGTGATTCCCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGCTACTTCAAATCCCCTAAGTACTAAAATGTGATTCCCTGAC  483

seq1  TTGCTTCTCATATAAGCTACACATTTATTAATCAAGCATACAGAATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTCATATAAGCTACACATTTATTAATCAAGCATACAGAATTAGT  533

seq1  AAATTTTAACAAAAAAGCATGCATCATTATACTGCCACCTATCTCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAACAAAAAAGCATGCATCATTATACTGCCACCTATCTCCCAGT  583

seq1  CATTTCAGAAGGATAATAAGTGCTTTATTTTCACCAAGATCTGCTAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAAGGATAATAAGTGCTTTATTTTCACCAAGATCTGCTAAATG  633

seq1  TGTATAGTGTTTTGTCGCTGTGTCCTTTCAGCACATGTTTGGCAAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTGTTTTGTCGCTGTGTCCTTTCAGCACATGTTTGGCAAAATCC  683

seq1  TAGATCAGGTCGAATCTAATTATCTGTCTTCCTTTGCACCTGTGCAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGGTCGAATCTAATTATCTGTCTTCCTTTGCACCTGTGCAGTTA  733

seq1  AATCCAGATGTCACTATAAATTTGTGCTCCAGCATCAACTAGGTTTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGATGTCACTATAAATTTGTGCTCCAGCATCAACTAGGTTTCCAA  783

seq1  AACATTTTGGCAACCCTTCTAACTCAGATAGTCAAGTATTTCTCCCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGGCAACCCTTCTAACTCAGATAGTCAAGTATTTCTCCCATTC  833

seq1  TTCAAAATAATACTTGCTTTCAAATGCTGAATTC  884
      ||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAATACTTGCTTTCAAATGCTGAATTC  867

seq1: chr12_49450224_49451231
seq2: B6Ng01-035I12.g_66_992

seq1  GAATTCTATGTAAATGAATCTCAAAGGCATTGTAATAACATATAATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTAAATGAATCTCAAAGGCATTGTAATAACATATAATAGAA  50

seq1  ATGACTTTCTCACCTGGTAAATGACTTTCTAAAAGGCCAGTGGTGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCTCACCTGGTAAATGACTTTCTAAAAGGCCAGTGGTGGCACA  100

seq1  AAATTCAATTATTGAAAATCTGTGAGTTTCTCAACTCTCTTCTAGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAATTATTGAAAATCTGTGAGTTTCTCAACTCTCTTCTAGTTAGT  150

seq1  ACGCCTTTTTTTTTTCTTGATAATAAGAAAGTGTTTGTAACATAGTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTTTTTTTTCTTGATAATAAGAAAGTGTTTGTAACATAGTAATG  200

seq1  GAGAAAAACTTATGGAAAGCTGATATAAAGAACTGAGACATGAGTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACTTATGGAAAGCTGATATAAAGAACTGAGACATGAGTGGGTC  250

seq1  TTATTATATTGTAAATCTGTCACTTTCCTTCAAATTCCTAACAGGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATTGTAAATCTGTCACTTTCCTTCAAATTCCTAACAGGTTATT  300

seq1  TCTCTGTCAAGAAATGACCAAGAAACATCATGCGTACTTATTATATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCAAGAAATGACCAAGAAACATCATGCGTACTTATTATATTACA  350

seq1  TTACAAGGGTATTCTCTATGAAAGAAAATAAACTCCTTTTCTTCAGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGGTATTCTCTATGAAAGAAAATAAACTCCTTTTCTTCAGCTTA  400

seq1  TTAAGATTATATTTCTTTGCTTTATGACATTTCATTGCATGCAGAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTATATTTCTTTGCTTTATGACATTTCATTGCATGCAGAGGATG  450

seq1  CTATCAAACATCTTTTTTTTTCTTTTTTTTCTTTTCTTTTTCTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAACATCTTTTTTTTTCTTTTTTTTCTTTTCTTTTTCTTTTTTTT  500

seq1  TTTTTTTTGCCAGATAGTGCACGATGCCAGACCAACAAAGTGATTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGCCAGATAGTGCACGATGCCAGACCAACAAAGTGATTTCATC  550

seq1  CAGTAGCAGCTTGGTGAGCAA-TGAGTATACTAGGTGTCATTATGGAACT  599
      ||||||||||||||||||||| ||||||||||| ||||| ||||||||||
seq2  CAGTAGCAGCTTGGTGAGCAATTGAGTATACTAAGTGTCTTTATGGAACT  600

seq1  GTGTATGAGCAGTTAC-TTATAAAAGCAAGAGTGGTTGCCCTTGGCAGAT  648
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  GTGTATGAGCAGTTACTTTATAAAAGCAAGAGTGGTTGCCCTTGGCAGAA  650

seq1  AAATCACCACAAAGCCAATCCTAGAATAGGTGGTGGCCAGTCATTTTCAG  698
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAC-AAGCCAATCCTAGAATAGGTGGTGGCCAGTCATTTTCAG  699

seq1  TGGATTTGCCTTCACAATTATAGGTAGAGCCACCAAAACTTCTCTCACCC  748
      ||||||||||||||| |||||| ||||||||||||||  | ||| |||||
seq2  TGGATTTGCCTTCAC-ATTATA-GTAGAGCCACCAAACTTCCTCCCACCC  747

seq1  TTGCATTTGTTTACTGATTTTATAATCTTAG-CACTCTTAGACATTTTGT  797
      ||||||||| ||||||||||||||  | ||| ||||| |||||| |||||
seq2  TTGCATTTG-TTACTGATTTTATA--CCTAGCCACTCCTAGACA-TTTGT  793

seq1  GAATTTCTTGAATCATTTCAGCTTTCTTTCTTCCATATTTGTAGAAAATA  847
      ||||||| || ||||||||||||| |||||||| ||||||| | ||||||
seq2  GAATTTC-TGGATCATTTCAGCTTCCTTTCTTCAATATTTG-AAAAAATA  841

seq1  ACAGTT-CAACACTGCACTTTTAATAACTCTTAGTCTCCTCTTCTCCTCT  896
      |||||| || | |||| ||||| |||   | ||| | |||||||||||||
seq2  ACAGTTCCACCCCTGCCCTTTT-ATA--CCCTAGCCCCCTCTTCTCCTCT  888

seq1  CTTTCTTCTCTTCTCTTCTCCTCTCCTCTTTTCTCCCCTCTTCTCCCCTC  946
      | ||| ||||||| |||| || |||| | |||  ||||||||        
seq2  C-TTCCTCTCTTC-CTTC-CCCCTCCCCCTTTTCCCCCTCTT--------  927

seq1  TTCTCCCCTCTTCTCCTCTCTTCTCCCCTCTTCTCCCCTCTTCTCCCCTC  996
                                                        
seq2  --------------------------------------------------  927

seq1  TTCTCCCCTCTT  1008
                  
seq2  ------------  927