BAC Information

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BAC

Clone NameB6Ng01-035L24
Chromosome12 (Build37)
Map Location 46,159,497 - 46,270,125
singlet/doubletdoublet
Overlap geneStxbp6
Upstream geneLOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035L24.bB6Ng01-035L24.g
ACCDH864137DH864138
length983954
definitionDH864137|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L24, 5' end.DH864138|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,269,109 - 46,270,125)(46,159,497 - 46,160,452)
sequence
gaattcaactaagggctgaagagatggatcagcggttaagagcactgact
gctcttccaaaggtcctgagttaaattcccagcaaccacatggtggctca
caaccatctgtaatggactcgatgccctcttctgatatgtctgatgacag
ctacagtacagtactcatataaaataaataaaccatttttaaaaaagaat
tcaactaaatctgtgtatatgttaactcattatttatcacaaacatatac
tatggtacatattatcatattattttgtagaaaaatgaatacggattatt
agaggttaaattttaaaatacgatggctttatgatattttaatagtaaac
aaaaacctaaagctttatgtaattcttactattgttggtaatatttatag
ggacatcagtgtgactgagcacattgtgtttgtgaactctttgattttat
actcccaaatctcagttgcaaatgacttttgtgatttcacactatcagtg
actaaatactctaagccataatatttgacaactgtggcacatcgctacta
agactgaactagtttgctgtattacttggccagaacgattgtcataaaac
accacagttccagaagccaagtatcaatcagagtttaacaggctctttct
gaggtcatgaggtaagtatctacctggggctctcctgggcttctccataa
cctcatgtggtcttcctgcagtcatctcccttgacttcccaatatcctta
tgtagtcttctttgtcttcatcttcttctccaaattttcctcttttatga
ggccctgtgtgttgggttggagcacactgtcatggtctcatttaacaatt
acttctgtaagaccttagctcagtaggtagctttccacataggctagttt
cacatctaagtagtgaactgtatacattagccatagcaaacccattttca
atatctctgtcatttgattttactttttttttt
gaattcttgatagggcttcaggctgtgattgccctttcaaactcaggact
ccacaggctgcttttaaagcatcttcctcgttatcctctgactctgaact
tctgcaatgcaatgaaagacaaaggcttagtcttagtcgttgccatattt
agtccagggtccaaagtatggcagttcaatatatattccctgaatgacaa
tatagggtgatctatatttgcatagtaccaagtaatggggggaaggctgt
caaataaagaaaagacttaatggtcctagttaaaatatggttggtaaaca
tcccttctccaatcccacatgtctagttgtgtttggaattcataactttt
ggcattttaggaaagtaatgtcgtctgcaacccttatgttctcagaagcg
tcatggtcagcatcgtaggatcacacacaatagcctgcacatgatcccac
taaatgagataaagaaagagctctctgtcagtcaatcagacttgaccagg
ccatgggttataaagacctttagcaccttttggatttggaaatcaggaac
agaatggtgagtctctattttttttttttatgtacatagttttttcacat
cccttctcccctttgctcaaaatttgttgtgacagaataggcctgtattt
tagatacaaaataaaaacagcatacactcaaatagcaataagacagggta
taagtcttagttaaaagatgagtcaaaagtacttctgtaaagacaagatt
cagagctatatacagactctcataccactgggcaatttcattaacttcat
tgaacattagaaaaattaagggaatgctaggattcctcactaaagggacc
aggagaggaaaaccgtgacaccagcccagaaatgaatggagtgactggct
gaataacacaacatgcatatgcaatactgtagactgactctatcactgct
ctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46269109_46270125
seq2: B6Ng01-035L24.b_48_1030 (reverse)

seq1  AAAAAAAAAAGTTTAAAAATCAAAATGACAAAGAAGATTATTTGAAAAAT  50
      ||||||||||||   |||||| |||||||| |||    ||||   |||||
seq2  AAAAAAAAAAGT---AAAATC-AAATGACAGAGA----TATT--GAAAAT  40

seq1  GGGTTTTGCTATGGGCTAAATTGTATTACAGTCTCACTTACTTTAGATGT  100
      ||| |||||||| ||||||  |||| |||||| |||| ||| ||||||| 
seq2  GGG-TTTGCTAT-GGCTAA--TGTA-TACAGT-TCAC-TAC-TTAGATG-  81

seq1  TGAAACCTAGCCCTATTGTGTGAAAAGCTACCTTAACTGGAGCTAAGGTC  150
      ||||| ||||||    | |||| ||||||||||  ||| |||||||||||
seq2  TGAAA-CTAGCC----TATGTGGAAAGCTACCT--ACT-GAGCTAAGGTC  123

seq1  TTAACAGAAGTAATTTGTTTAAAATGAGACCATGACAGTGTGCTCCAACC  200
      || |||||||||| |||||  |||||||||||||||||||||||||||||
seq2  TT-ACAGAAGTAA-TTGTT--AAATGAGACCATGACAGTGTGCTCCAACC  169

seq1  CAACACCACAGGGCCCTCATAAAAAGAGGAAAATTTGGAGAAGAAGATGA  250
      ||||| ||||||| |||||| |||||||||||||||||||||||||||||
seq2  CAACA-CACAGGG-CCTCAT-AAAAGAGGAAAATTTGGAGAAGAAGATGA  216

seq1  AGACAAAGAAGACTACATAAGGATATTGGGAAGTCAAGGGGAGATGACTG  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGACAAAGAAGACTACATAAGGATATTGGGAAGTCAA-GGGAGATGACTG  265

seq1  CAGGAAGACCACATGAGGTTATGGAGAAG-CCAGGAGAGCCCCAGGTAGA  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGAAGACCACATGAGGTTATGGAGAAGCCCAGGAGAGCCCCAGGTAGA  315

seq1  TACTTACCTCATGACCTCAGAAAGAGCCTGTTAAACTCTGATTGATACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCTCATGACCTCAGAAAGAGCCTGTTAAACTCTGATTGATACTT  365

seq1  GGCTTCTGGAACTGTGGTGTTTTATGACAATCGTTCTGGCCAAGTAATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGGAACTGTGGTGTTTTATGACAATCGTTCTGGCCAAGTAATAC  415

seq1  AGCAAACTAGTTCAGTCTTAGTAGCGATGTGCCACAGTTGTCAAATATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAGTTCAGTCTTAGTAGCGATGTGCCACAGTTGTCAAATATTA  465

seq1  TGGCTTAGAGTATTTAGTCACTGATAGTGTGAAATCACAAAAGTCATTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAGTATTTAGTCACTGATAGTGTGAAATCACAAAAGTCATTTG  515

seq1  CAACTGAGATTTGGGAGTATAAAATCAAAGAGTTCACAAACACAATGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGATTTGGGAGTATAAAATCAAAGAGTTCACAAACACAATGTGC  565

seq1  TCAGTCACACTGATGTCCCTATAAATATTACCAACAATAGTAAGAATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACACTGATGTCCCTATAAATATTACCAACAATAGTAAGAATTAC  615

seq1  ATAAAGCTTTAGGTTTTTGTTTACTATTAAAATATCATAAAGCCATCGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTTAGGTTTTTGTTTACTATTAAAATATCATAAAGCCATCGTA  665

seq1  TTTTAAAATTTAACCTCTAATAATCCGTATTCATTTTTCTACAAAATAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTAACCTCTAATAATCCGTATTCATTTTTCTACAAAATAAT  715

seq1  ATGATAATATGTACCATAGTATATGTTTGTGATAAATAATGAGTTAACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATATGTACCATAGTATATGTTTGTGATAAATAATGAGTTAACAT  765

seq1  ATACACAGATTTAGTTGAATTCTTTTTTAAAAATGGTTTATTTATTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGATTTAGTTGAATTCTTTTTTAAAAATGGTTTATTTATTTTAT  815

seq1  ATGAGTACTGTACTGTAGCTGTCATCAGACATATCAGAAGAGGGCATCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACTGTACTGTAGCTGTCATCAGACATATCAGAAGAGGGCATCGA  865

seq1  GTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTTAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTTAACT  915

seq1  CAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGATCCATCTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGATCCATCTCTT  965

seq1  CAGCCCTTAGTTGAATTC  1017
      ||||||||||||||||||
seq2  CAGCCCTTAGTTGAATTC  983

seq1: chr12_46159497_46160452
seq2: B6Ng01-035L24.g_67_1020

seq1  GAATTCTTGATAGGGCTTCAGGCTGTGATTGCCCTTTCAAACTCAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATAGGGCTTCAGGCTGTGATTGCCCTTTCAAACTCAGGACT  50

seq1  CCACAGGCTGCTTTTAAAGCATCTTCCTCGTTATCCTCTGACTCTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTGCTTTTAAAGCATCTTCCTCGTTATCCTCTGACTCTGAACT  100

seq1  TCTGCAATGCAATGAAAGACAAAGGCTTAGTCTTAGTCGTTGCCATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATGCAATGAAAGACAAAGGCTTAGTCTTAGTCGTTGCCATATTT  150

seq1  AGTCCAGGGTCCAAAGTATGGCAGTTCAATATATATTCCCTGAATGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGGTCCAAAGTATGGCAGTTCAATATATATTCCCTGAATGACAA  200

seq1  TATAGGGTGATCTATATTTGCATAGTACCAAGTAATGGGGGGAAGGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTGATCTATATTTGCATAGTACCAAGTAATGGGGGGAAGGCTGT  250

seq1  CAAATAAAGAAAAGACTTAATGGTCCTAGTTAAAATATGGTTGGTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGAAAAGACTTAATGGTCCTAGTTAAAATATGGTTGGTAAACA  300

seq1  TCCCTTCTCCAATCCCACATGTCTAGTTGTGTTTGGAATTCATAACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCCAATCCCACATGTCTAGTTGTGTTTGGAATTCATAACTTTT  350

seq1  GGCATTTTAGGAAAGTAATGTCGTCTGCAACCCTTATGTTCTCAGAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTAGGAAAGTAATGTCGTCTGCAACCCTTATGTTCTCAGAAGCG  400

seq1  TCATGGTCAGCATCGTAGGATCACACACAATAGCCTGCACATGATCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTCAGCATCGTAGGATCACACACAATAGCCTGCACATGATCCCAC  450

seq1  TAAATGAGATAAAGAAAGAGCTCTCTGTCAGTCAATCAGACTTGACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGATAAAGAAAGAGCTCTCTGTCAGTCAATCAGACTTGACCAGG  500

seq1  CCATGGGTTATAAAGACCTTTAGCACCTTTTGGATTTGGAAATCAGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTTATAAAGACCTTTAGCACCTTTTGGATTTGGAAATCAGGAAC  550

seq1  AGAATGGTGAGTCTCTATTTTTTTTTTTCATGTACATAG-TTTTTCACAT  599
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  AGAATGGTGAGTCTCTATTTTTTTTTTTTATGTACATAGTTTTTTCACAT  600

seq1  CCCTTCTCCCCTTTGCTCAAAATTTGTTGTGACAGAATAGGCCTGTA-TT  648
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCTTCTCCCCTTTGCTCAAAATTTGTTGTGACAGAATAGGCCTGTATTT  650

seq1  TAGATAC-AAATAAAAACAGCATACACTCAAATAGCAAT-AGACAGGTTA  696
      ||||||| ||||||||||||||||||||||||||||||| ||||||| ||
seq2  TAGATACAAAATAAAAACAGCATACACTCAAATAGCAATAAGACAGGGTA  700

seq1  TAAGTCTTAGTTAAAAGATGAGTCAAAAGTAC-TCTGTAAAGACAAGATT  745
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGTCTTAGTTAAAAGATGAGTCAAAAGTACTTCTGTAAAGACAAGATT  750

seq1  CAGAGCTATATACAGACTCTCATTACCACT-GGCAATTTCATTAACTTCA  794
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CAGAGCTATATACAGACTCTCA-TACCACTGGGCAATTTCATTAACTTCA  799

seq1  TTGAACACTAGAAAAATTAAGGGAATGCTAAGATTCCTCACTAAA-GGAC  843
      ||||||| |||||||||||||||||||||| |||||||||||||| ||||
seq2  TTGAACATTAGAAAAATTAAGGGAATGCTAGGATTCCTCACTAAAGGGAC  849

seq1  CAGGAGAGGAAAACCGTGACACACAGCCCAGAAATGAAT-GAGTGACTGG  892
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  CAGGAGAGGAAAACCGTGACAC-CAGCCCAGAAATGAATGGAGTGACTGG  898

seq1  CTGAATACACACACACATGCATATGCAAATACTGTTAAGAACTGACTCTT  942
      ||||||| ||||| |||||||||||| ||||||||  || |||||||| |
seq2  CTGAATA-ACACA-ACATGCATATGC-AATACTGT--AG-ACTGACTC-T  941

seq1  ATCACTGCTTCTAA  956
      |||||||| |||||
seq2  ATCACTGC-TCTAA  954