BAC Information

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BAC

Clone NameB6Ng01-036C19
Chromosome12 (Build37)
Map Location 36,180,706 - 36,308,675
singlet/doubletdoublet
Overlap geneAhr
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C19.bB6Ng01-036C19.g
ACCDH864435DH864436
length1,139786
definitionDH864435|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C19, 5' end.DH864436|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,180,706 - 36,181,859)(36,307,883 - 36,308,675)
sequence
gaattcataatgtaagcatttaatatgcaagatatgacttccttgaaagg
gttgtccttcaaccctcaaaggggtcacaatccacaggttgaaaacccta
aactagaggatgcttgctactctggaatcaagacatcggaagacattact
tccttcccttttctagcttcttggcccttcttgcattatcaccatagtgt
cttcaaatccttctgctgtcctccgttctgttctccctcccttctgactc
tccaaccttcctcttgcaagaactttttgatgattgcactgagcctcccc
agtaatccagggcagcccctgtgtcagccttctcttaagagagaaggaat
aagctgtggtttccatgattttcgtccatggtttcttggccatgttactg
cccagcacattttgaaggaactaaggtaaaagagttttgctcactttact
ggactcaggaaatacagaaaaagaggggaagggtttggtctcaaaatctc
ttctcaggatacacccttggtgtccagtatcctcccatggtatactatta
tttaaaggctccatcccctctcaatagatcataagctagtggccaagcct
ccaacaagagatatagaggacattttcgatccaatctatagcatcttgtc
atttctaggtcctggactgtacagtaacatctacagaatgtcccttgcca
ccaaattaacatacacatgggttcttaaaaaatacaaactattctgtgta
taaccatttgaagatttcagttgctttttaaaatatagtttagtccttta
taaaatggaataattaaattgacctcatgggatgtaaatgagataaacta
aatgatgcatcaggtggaatgggaagatagagcaatgcacttgtgcaggg
acagtcagctgctctgccctgtatcagtcagtgtactttgttccctcaga
tcacctaaacaaacgatgtgagtcactttaaatcttggtctcagttctca
tctctaagtgttaatttttatgaatcgttttccatctttatgtgctgtta
ttgggagtcacgtatctaacctcaagaagtattgagggcactctaggtgg
agcttcaaccttgaggtttcttccaaaggcaagagctgt
gaattcaccccctcagagcatcagtgctttccagccagtctcatcagttc
agtttcctacttcctaaacttctacttcaggatgcgctggtcagtaccat
atgtttttgaatttccttagtactttgaattgaaaacaacaacaaaaaat
cttttcaaattgaaagaaatttgtaaaatgggtctcagctttcttgctgc
ctctgtctcaagaggaatacacctaggtttagatttcaactcctggcccc
tgtgagctgttattgcctgattcgtggctctgcccacttcccctacttga
gggcaaacttcaaatcttttagaaatgggatgaaaataaccaactgacga
aaaatgaaacttatatttacagtaacatgttaagactgaatctccttagg
tggtagtcagtatttcattcacaaaaataaaactcattttaagtctccct
gccccatttcagaggaaatggagcaatacgaaacattcaacagttctacc
aggtaagaaaatgttccatacaaacaggaggctatgacaggagacaagtt
tgctagactcagtttcactccaaggtggcttttgcagcttgtaactagag
agacaaacatagaatatttctccctcaacttgcaaattttgacaagattt
ttaggttgtgttttaaatttagaggaggtccaaacccatgagtaacaaca
gaccaattctcataccagcagtaataacactaactatatatatatagtat
atatatatatatatatatatatatatatatatagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36180706_36181859
seq2: B6Ng01-036C19.b_46_1184

seq1  GAATTCATAATGTAAGCATTTAATATGCAAGATATGACTTCCTTGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGTAAGCATTTAATATGCAAGATATGACTTCCTTGAAAGG  50

seq1  GTTGTCCTTCAACCCTCAAAGGGGTCACAATCCACAGGTTGAAAACCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTTCAACCCTCAAAGGGGTCACAATCCACAGGTTGAAAACCCTA  100

seq1  AACTAGAGGATGCTTGCTACTCTGGAATCAAGACATCGGAAGACATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGGATGCTTGCTACTCTGGAATCAAGACATCGGAAGACATTACT  150

seq1  TCCTTCCCTTTTCTAGCTTCTTGGCCCTTCTTGCATTATCACCATAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTTTTCTAGCTTCTTGGCCCTTCTTGCATTATCACCATAGTGT  200

seq1  CTTCAAATCCTTCTGCTGTCCTCCGTTCTGTTCTCCCTCCCTTCTGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATCCTTCTGCTGTCCTCCGTTCTGTTCTCCCTCCCTTCTGACTC  250

seq1  TCCAACCTTCCTCTTGCAAGAACTTTTTGATGATTGCACTGAGCCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTTCCTCTTGCAAGAACTTTTTGATGATTGCACTGAGCCTCCCC  300

seq1  AGTAATCCAGGGCAGCCCCTGTGTCAGCCTTCTCTTAAGAGAGAAGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCCAGGGCAGCCCCTGTGTCAGCCTTCTCTTAAGAGAGAAGGAAT  350

seq1  AAGCTGTGGTTTCCATGATTTTCGTCCATGGTTTCTTGGCCATGTTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGGTTTCCATGATTTTCGTCCATGGTTTCTTGGCCATGTTACTG  400

seq1  CCCAGCACATTTTGAAGGAACTAAGGTAAAAGAGTTTTGCTCACTTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACATTTTGAAGGAACTAAGGTAAAAGAGTTTTGCTCACTTTACT  450

seq1  GGACTCAGGAAATACAGAAAAAGAGGGGAAGGGTTTGGTCTCAAAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGGAAATACAGAAAAAGAGGGGAAGGGTTTGGTCTCAAAATCTC  500

seq1  TTCTCAGGATACACCCTTGGTGTCCAGTATCCTCCCATGGTATACTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGATACACCCTTGGTGTCCAGTATCCTCCCATGGTATACTATTA  550

seq1  TTTAAAGGCTCCATCCCCTCTCAATAGATCATAAGCTAGTGGCCAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCTCCATCCCCTCTCAATAGATCATAAGCTAGTGGCCAAGCCT  600

seq1  CCAACAAGAGATATAGAGGACATTTTCGATCCAATCTATAGCATCTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGAGATATAGAGGACATTTTCGATCCAATCTATAGCATCTTGTC  650

seq1  ATTTCTAGGTCCTGGACTGTACAGTAACATCTACAGAATGTCCCTTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGGTCCTGGACTGTACAGTAACATCTACAGAATGTCCCTTGCCA  700

seq1  CCAAATTAACATACACATGGGTTCTTAAAAAATACAAACTATTCTGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTAACATACACATGGGTTCTTAAAAAATACAAACTATTCTGTGTA  750

seq1  TAACCATTTGAAGATTTCAGTTGCTTTTTAAAAATATAGTTTAGTCCTTT  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAACCATTTGAAGATTTCAGTTGCTTTTT-AAAATATAGTTTAGTCCTTT  799

seq1  ATAAAAATGGAATAATTAAATTGACCTCATGGGATGTAAATGAGATAAAC  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAAATGGAATAATTAAATTGACCTCATGGGATGTAAATGAGATAAAC  848

seq1  TAAATGATGCATCAGGTGGAATGGGAAGATAGAGCAATGCACTTGTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATGCATCAGGTGGAATGGGAAGATAGAGCAATGCACTTGTGCAG  898

seq1  GGACAGTCAGCTGCTCTGCCCTGTATCAGTCAGTGTACTTTGTTCCCTCC  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACAGTCAGCTGCTCTGCCCTGTATCAGTCAGTGTACTTTGTTCCCT-C  947

seq1  AGATCACCTAAACAAACGATGTGAGGTCACTTTAAATCTTTGGTCTCAGT  1000
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AGATCACCTAAACAAACGATGTGA-GTCACTTTAAATC-TTGGTCTCAGT  995

seq1  TTCTTCATCTCTAAGTGTGTAATTTTTTATGAATCGTTTTTCCATCTTTA  1050
      |   |||||||||||||| ||| ||||||||||||| |||||||||||||
seq2  T--CTCATCTCTAAGTGT-TAA-TTTTTATGAATCG-TTTTCCATCTTTA  1040

seq1  TGTGCTGTTATTTGGAAGTCACGTATCTTACACTCAAAGAGGTGATGAAG  1100
      |||||||||| |||| |||||||||||| || ||| |||| || ||  ||
seq2  TGTGCTGTTA-TTGGGAGTCACGTATCTAAC-CTC-AAGAAGT-ATTGAG  1086

seq1  GGCACTCATAGT-GAGC-TCAACCTTGAGGGTATTCCTCACAAAGGCAAG  1148
      |||||||   || |||| ||||||||||||   || ||  ||||||||||
seq2  GGCACTCTAGGTGGAGCTTCAACCTTGAGG---TTTCTTCCAAAGGCAAG  1133

seq1  AGCTGT  1154
      ||||||
seq2  AGCTGT  1139

seq1: chr12_36307883_36308675
seq2: B6Ng01-036C19.g_65_850 (reverse)

seq1  TACTATATATATATATATATATATATATATATATATATAACTATATTATA  50
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TACTATATATATATATATATATATATATATATATATAT-ACTATA-TATA  48

seq1  TATAGTTAGTGTTATTACTGCTGGGTATGAGAATTGGTCTGTTGTTACTC  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATAGTTAGTGTTATTACTGCT-GGTATGAGAATTGGTCTGTTGTTACTC  97

seq1  ATGGGTTTGGGACCTCCTCTAAATTTTAAAACACAAACCTAAAAATCTTG  150
      |||||||| |||||||||||||| |||||||||| |||||||||||||||
seq2  ATGGGTTT-GGACCTCCTCTAAA-TTTAAAACAC-AACCTAAAAATCTTG  144

seq1  TCAAAATTTGCAAGTTTGAGGGAGAAATATTCTATGTTTGTCTCTCTAGT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTGCAAG-TTGAGGGAGAAATATTCTATGTTTGTCTCTCTAGT  193

seq1  TACAAGCTGCAAAAGCCACCTTGGAGTGAAACTGAGTCTAGCAAACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTGCAAAAGCCACCTTGGAGTGAAACTGAGTCTAGCAAACTTGT  243

seq1  CTCCTGTCATAGCCTCCTGTTTGTATGGAACATTTTCTTACCTGGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCATAGCCTCCTGTTTGTATGGAACATTTTCTTACCTGGTAGAA  293

seq1  CTGTTGAATGTTTCGTATTGCTCCATTTCCTCTGAAATGGGGCAGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAATGTTTCGTATTGCTCCATTTCCTCTGAAATGGGGCAGGGAGA  343

seq1  CTTAAAATGAGTTTTATTTTTGTGAATGAAATACTGACTACCACCTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGAGTTTTATTTTTGTGAATGAAATACTGACTACCACCTAAGG  393

seq1  AGATTCAGTCTTAACATGTTACTGTAAATATAAGTTTCATTTTTCGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGTCTTAACATGTTACTGTAAATATAAGTTTCATTTTTCGTCAG  443

seq1  TTGGTTATTTTCATCCCATTTCTAAAAGATTTGAAGTTTGCCCTCAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTTTCATCCCATTTCTAAAAGATTTGAAGTTTGCCCTCAAGTA  493

seq1  GGGGAAGTGGGCAGAGCCACGAATCAGGCAATAACAGCTCACAGGGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGGGCAGAGCCACGAATCAGGCAATAACAGCTCACAGGGGCCA  543

seq1  GGAGTTGAAATCTAAACCTAGGTGTATTCCTCTTGAGACAGAGGCAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGAAATCTAAACCTAGGTGTATTCCTCTTGAGACAGAGGCAGCAA  593

seq1  GAAAGCTGAGACCCATTTTACAAATTTCTTTCAATTTGAAAAGATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGAGACCCATTTTACAAATTTCTTTCAATTTGAAAAGATTTTTT  643

seq1  GTTGTTGTTTTCAATTCAAAGTACTAAGGAAATTCAAAAACATATGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTCAATTCAAAGTACTAAGGAAATTCAAAAACATATGGTAC  693

seq1  TGACCAGCGCATCCTGAAGTAGAAGTTTAGGAAGTAGGAAACTGAACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCGCATCCTGAAGTAGAAGTTTAGGAAGTAGGAAACTGAACTGA  743

seq1  TGAGACTGGCTGGAAAGCACTGATGCTCTGAGGGGGTGAATTC  793
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGGCTGGAAAGCACTGATGCTCTGAGGGGGTGAATTC  786