BAC Information

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BAC

Clone NameB6Ng01-036I15
Chromosome12 (Build37)
Map Location 57,809,477 - 57,810,298
singlet/doubletsinglet
Overlap genePax9
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9
Downstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036I15.bB6Ng01-036I15.g
ACCDH864682DH864683
length1,116806
definitionDH864682|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I15, 5' end.DH864683|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttagaataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttgttgacggagtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagtatggatc
gattcgcattcttctacatgataacagccagttgtgccagcaccaattgt
tgaaaatgctgtctttcttccactggatggttttagctcccttgtcgaag
atcaagtgaccataggtgtgtgggttcatttctgggttcaattctattcc
attggtctacttgtctgtttctataccagtaccatgcagtttttatcaca
attgctctgtagtacagctttaggtcaggcatggtggttccaccagaggt
tcttttatccttgagaagagtttttgctatcctaggtttttttgttattc
cagatgaatttgcagattgctctttctaattcgttgaagaattgagttgg
aattttgatggggattgcattgaatctgtagatttgcttttggcaagata
gccatttttactatattgatcctgccaatccatgagcataggagatcttt
ccatcttctgagatcttctttaattctttcttcagagacttgaagttctt
atcatacagatttttcacatccttagttagagtcacaccaaggtatttta
tattattttgtgactattgagaaggtgttgtttccctgatttcttctcag
cttgttattcttgtatagagaaaggccattgacttgttgagttattttaa
tccgctcttcaccgagctgttatcaggttagagttctctgggagaaattt
aagggcactaattaaactactaactatcgccaaaaggaaattttgacctc
ctctttcttaattgga
gaattctgctcagcactgcactgcctctgtcaaccttccccggcacttgc
taacttttgccttttttgttggagctttgttacagacctgtctcctgtag
ctttcatttccaggagagaaaggcagaaagtgtggcctgctgtgttagaa
actcaaaacggacagattttctgttaaataaagcacgggccatgtttcaa
gatatcgtgttgaaaacgccacttggacaaggacattgtaaactcgggat
ttttctagtaagggtttttttgttgttttggttttggttttttaagtttg
gagatttttttttcacaatcagaaaggaaattttctccacaaatatgaat
gaatatgtgcagttttgaattggaaattttgcatttgcaaagtccagggt
tttggttttttttttttgtttgtttgtttttttgtttttttttaaagcca
tatgaacaaatctctttaaaggagtttaatgtgaaatctttgtttgcaaa
caagatgcagcagctctggcaggcagactttgcttggaaaccagtgcttt
cctggcgtccaataaatcattgttggtatcgttactattaacaacaccaa
aaacaccctgatgtctaatccctctctggcatggatgctccccacccttt
ttcagtggtccttttcttcctcccagtttctactctgtttaagataaaga
gtaaatctgtttctggtaatgactgaccagactaacatgtcaactttttt
caaagaaaaatatatatgcaggattgtttagaagcgtgattatccacgaa
gctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57809477_57810298
seq2: B6Ng01-036I15.g_67_872 (reverse)

seq1  CTCAGCTCTGTGGATTAAATCACGTTTTCTAATACAATTCCTGCATTTAT  50
      |||||||  ||||||  |||||||  |||||| |||| |||||||| |||
seq2  CTCAGCTTCGTGGAT--AATCACG-CTTCTAA-ACAA-TCCTGCATATAT  45

seq1  ATTACTTTTTCTTTAGGAAATATGTTGACATGTTAGTCTGGTCATGTCAT  100
      |    |||||||||  |||| | ||||||||||||||||||||| |||||
seq2  A----TTTTTCTTT--GAAAAAAGTTGACATGTTAGTCTGGTCA-GTCAT  88

seq1  TACCAGGAAACAAGATTTACTCTTTATCTTTAAACAGAGTAGAAACTGGG  150
      ||||| ||||| |||||||||||||||| |||||||||||||||||||||
seq2  TACCA-GAAAC-AGATTTACTCTTTATC-TTAAACAGAGTAGAAACTGGG  135

seq1  AGGAAAGAAAAGAACCACTTGAAAAAGGGTGGGGAGCATCCATGCCAGAG  200
      ||| |||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AGG-AAGAAAAGGACCAC-TGAAAAAGGGTGGGGAGCATCCATGCCAGAG  183

seq1  AGGGATTAGACATCAGGGTGTTTTTGGTGTTGTTAATAGTAACGATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTAGACATCAGGGTGTTTTTGGTGTTGTTAATAGTAACGATACCA  233

seq1  ACAATGATTTATTGGACGCCAGGAAAGCACTGGTTTCCAAGC-AAGTCTG  299
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAATGATTTATTGGACGCCAGGAAAGCACTGGTTTCCAAGCAAAGTCTG  283

seq1  CCTGCCAGAGCTGCTGCATCTTGTTTGCAAACAAAGATTTCACATTAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGAGCTGCTGCATCTTGTTTGCAAACAAAGATTTCACATTAAAC  333

seq1  TCCTTTAAAGAGATTTGTTCATATGGCTTTAAAAAAAAACAAAAAAACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAGAGATTTGTTCATATGGCTTTAAAAAAAAACAAAAAAACAA  383

seq1  ACAAACAAAAAAAAAAAACCAAAACCCTGGACTTTGCAAATGCAAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAAAAAAAACCAAAACCCTGGACTTTGCAAATGCAAAATTT  433

seq1  CCAATTCAAAACTGCACATATTCATTCATATTTGTGGAGAAAATTTCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAAAACTGCACATATTCATTCATATTTGTGGAGAAAATTTCCTT  483

seq1  TCTGATTGTGAAAAAAAAATCTCCAAACTTAAAAAACCAAAACCAAAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGTGAAAAAAAAATCTCCAAACTTAAAAAACCAAAACCAAAACA  533

seq1  ACAAAAAAACCCTTACTAGAAAAATCCCGAGTTTACAATGTCCTTGTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACCCTTACTAGAAAAATCCCGAGTTTACAATGTCCTTGTCCA  583

seq1  AGTGGCGTTTTCAACACGATATCTTGAAACATGGCCCGTGCTTTATTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCGTTTTCAACACGATATCTTGAAACATGGCCCGTGCTTTATTTAA  633

seq1  CAGAAAATCTGTCCGTTTTGAGTTTCTAACACAGCAGGCCACACTTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCTGTCCGTTTTGAGTTTCTAACACAGCAGGCCACACTTTCTG  683

seq1  CCTTTCTCTCCTGGAAATGAAAGCTACAGGAGACAGGTCTGTAACAAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTCCTGGAAATGAAAGCTACAGGAGACAGGTCTGTAACAAAGC  733

seq1  TCCAACAAAAAAGGCAAAAGTTAGCAAGTGCCGGGGAAGGTTGACAGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAAAAAGGCAAAAGTTAGCAAGTGCCGGGGAAGGTTGACAGAGG  783

seq1  CAGTGCAGTGCTGAGCAGAATTC  822
      |||||||||||||||||||||||
seq2  CAGTGCAGTGCTGAGCAGAATTC  806