BAC Information

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BAC

Clone NameB6Ng01-036J21
Chromosome12 (Build37)
Map Location 116,332,660 - 116,527,012
singlet/doubletdoublet
Overlap geneIgh, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57
Upstream geneIghv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506
Downstream geneIghv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036J21.bB6Ng01-036J21.g
ACCDH864732DH864733
length1,0291,034
definitionDH864732|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J21, 5' end.DH864733|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,332,660 - 116,333,701)(116,525,953 - 116,527,012)
sequence
gaattcagggatcaaaaaggcatggaaaaatttgaatgtcatgtcgaact
ggtatcggcttctggaataccgaaaggatctctcatctcggctccatcct
ttgtgcttgtgggatcatccaccacatccacaggggcaactggatcagga
gcctcattcttgcagcgtctcaccaatctcttcggcacccaaagaggttc
tgtctggtcctgtggaaacacacaaacagaccctctcgcccacatcaaca
cctgatccggtcgatccccagtggagatggacacaatacctcgtggtgat
gagaccataacctcaatcacctgtgtgttcatctgggaagtcaatatgaa
agtcaagttttcactagcttcccctctgttgggcaatgatttccgtgccc
ttatggcaatctgattcacctgcttaaacacctgcactggatatcctgtc
tgttgttgtgcaaatcgaccttgatcaagcaacatatctctatcccatgc
aaattcagcttgatcagtgaaaataggacatcccagcaaggagaatctat
cctctttccagacctccggacagaaggtctgcccatagatggctgccgag
gaggcatagggagggggagcagaagctaattcaccttcctcctccgcctc
agctctgttgtcctgtcctttctgtccacctgataacactgtgtctcctt
tctttttcctttttctttttaagcccttttcctcttccgacatactttct
tgttgctctgtaaggattttctgacctgtcttgactgcctctacacacag
tttcaaacagtaacagagtccatatatcagaacaaacaagaccaaactat
cagacctacccacaaagggtcaatgggagaaaaagcataactacacagcg
aggatctattgatcactacactgagttatcatagtcctaacttgtcccaa
accgggaaccttaacttatcccaaccgggaacctatcgtacttgtggctg
ctctggcaacttatgctcccctctatttt
gaattcttaacaaaggaatcactattgaaaaagaagcacttataggagtg
ttcattatccttagctgaccatgaaatggaaatcaaaatgagtctaggat
tctgtcttacaaatgtcagaatggctaaatctaaagtcacaagtgatgaa
taatgctgatgaggatgtggagcaaggtgaccacttctctattgcttgta
ggagtacatacttttatagccactctgaagtatacacttatattaaaact
atcatttcaaggaaatacctttgttagttaatattgctcataagtatttc
atttattacatatgaactttatcaaaataataagcatcaattgcatatcc
acttaaaaataagctacaaagtttcaatcatgaggtatcaaacaaccatt
catcatcatcaccatccatagcatacataaatctatgtgtaatttcttcc
actgacaggagggtttcttcagcaggaaaatatgattgtgacttggaaac
agagtccctactgccccattcacaggagggagcctatatagctcttctgg
gcaagtgtagatgtcctgtattccaatgtgttccccagtactatgtgaag
acctcagttcaggaaaaggagagaaagagaggctaggcattttgcatcac
atgagcttcatttcattttgattttcatccttcatttttctttcataaca
aaaatttaaatcaaatttgtagtatcagttgattgtgtgagatttgtgga
catgggattgggagagaagcagaaaatatctaaactaaagagtatttgtt
actttaaaatcttaaagggggaagaagaaatgtggcttcatacttattgt
gtccactcgacagggcaagaagaagcaacaaaaccgaaatctctgtggca
aaagcttattgctactctcaggagacccgaacgggaaaatggagcgctta
tagtcgcaacatgacgtttcagcactgaattgctgaagctctgatcattc
cgcgcacaaccagataccccgagatggagtgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116332660_116333701
seq2: B6Ng01-036J21.b_49_1077

seq1  GAATTCAGGGATCAAAAAGGCATGGAAAAATTTGAATGTCATGTCGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATCAAAAAGGCATGGAAAAATTTGAATGTCATGTCGAACT  50

seq1  GGTATCGGCTTCTGGAATACCGAAAGGATCTCTCATCTCGGCTCCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCGGCTTCTGGAATACCGAAAGGATCTCTCATCTCGGCTCCATCCT  100

seq1  TTGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGA  150

seq1  GCCTCATTCTTGCAGCGTCTCACCAATCTCTTCGGCACCCAAAGAGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTCTTGCAGCGTCTCACCAATCTCTTCGGCACCCAAAGAGGTTC  200

seq1  TGTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACATCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACATCAACA  250

seq1  CCTGATCCGGTCGATCCCCAGTGGAGATGGACACAATACCTCGTGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCCGGTCGATCCCCAGTGGAGATGGACACAATACCTCGTGGTGAT  300

seq1  GAGACCATAACCTCAATCACCTGTGTGTTCATCTGGGAAGTCAATATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATAACCTCAATCACCTGTGTGTTCATCTGGGAAGTCAATATGAA  350

seq1  AGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCCGTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCCGTGCCC  400

seq1  TTATGGCAATCTGATTCACCTGCTTAAACACCTGCACTGGATATCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCAATCTGATTCACCTGCTTAAACACCTGCACTGGATATCCTGTC  450

seq1  TGTTGTTGTGCAAATCGACCTTGATCAAGCAACATATCTCTATCCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTGCAAATCGACCTTGATCAAGCAACATATCTCTATCCCATGC  500

seq1  AAATTCAGCTTGATCAGTGAAAATAGGACATCCCAGCAAGGAGAATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGCTTGATCAGTGAAAATAGGACATCCCAGCAAGGAGAATCTAT  550

seq1  CCTCTTTCCAGACCTCCGGACAGAAGGTCTGCCCATAGATGGCTGCCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCAGACCTCCGGACAGAAGGTCTGCCCATAGATGGCTGCCGAG  600

seq1  GAGGCATAGGGAGGGGGAGCAGAAGCTAATTCACCTTCCTCCTCCGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATAGGGAGGGGGAGCAGAAGCTAATTCACCTTCCTCCTCCGCCTC  650

seq1  AGCTCTGTTGTCCTGTCCTTTCTGTCCACCTGATAACACTGTGTCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTTGTCCTGTCCTTTCTGTCCACCTGATAACACTGTGTCTCCTT  700

seq1  TCTTTTTCCTTTTTCTTTTTAAGCCCTTTTCCTCTTCCGACATACTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCTTTTTCTTTTTAAGCCCTTTTCCTCTTCCGACATACTTTCT  750

seq1  TGTTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCCTCTACACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCCTCTACACACAG  800

seq1  TTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAAGACCAAAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAAGACC-AAACTA  849

seq1  TCAGACCTACCCACAAAGGGTCAATGGGAGAAAAAAGCATAACTACACAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGACCTACCCACAAAGGGTCAATGGGAG-AAAAAGCATAACTACACAG  898

seq1  CGAGGATCTATTGATCACTACACTGAGGTTATCATAGTTCCTTAACTTGT  950
      |||||||||||||||||||||||||| |||||||||||  | ||||||||
seq2  CGAGGATCTATTGATCACTACACTGA-GTTATCATAGT--CCTAACTTGT  945

seq1  CCCCAAACCGGGAACCTTAACTTATCCCAAAACCGGGAACCTATCGTTAC  1000
       |||||||||||||||||||||||||||  |||||||||||||||||   
seq2  -CCCAAACCGGGAACCTTAACTTATCCC--AACCGGGAACCTATCGT--A  990

seq1  CTTGTGCCTGCTTCCTGGCAACTTTATGCTCCCCTCTATTTT  1042
      |||||| |||||  |||||||| |||||||||||||||||||
seq2  CTTGTGGCTGCT--CTGGCAAC-TTATGCTCCCCTCTATTTT  1029

seq1: chr12_116525953_116527012
seq2: B6Ng01-036J21.g_64_1097 (reverse)

seq1  AGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGGCGAGAAATGA  50
      |||||||||   ||||||||| |     ||    | || ||| | |||| 
seq2  AGTCACTCC--ATCTCGGGGTAT----CTG----GTTGTGCGCGGAATG-  39

seq1  ATCAGGAGCTGTCACGCAATATCAGGTGCTGAAACGTCATGCTGCGGACT  100
      |||| ||||| ||| ||||| ||| |||||||||||||||| ||| ||||
seq2  ATCA-GAGCT-TCA-GCAAT-TCA-GTGCTGAAACGTCATGTTGC-GACT  83

seq1  ATAAAAGCGGCTCCATTTTCCCGGTTCGGGGTCTTCCTGAAGAAGTAAGC  150
      ||  |||| ||||||||||||| |||| ||||| ||||||   ||| |||
seq2  AT--AAGC-GCTCCATTTTCCC-GTTC-GGGTC-TCCTGA--GAGT-AGC  124

seq1  AATAAAGCTTTTGCCACAGAAGATTTCGG-TTTGTTGCGTCTTTCTTG-C  198
      ||| ||||||||||||||| ||||||||| |||||||| || |||||| |
seq2  AAT-AAGCTTTTGCCACAG-AGATTTCGGTTTTGTTGCTTC-TTCTTGCC  171

seq1  CTGTCGAGTGGGACACAATAAGTATGAAGGCAACATTTCTTCTT-CCCCT  247
      ||||||||| |||||||||||||||||| || |||||||||||| |||||
seq2  CTGTCGAGT-GGACACAATAAGTATGAA-GCCACATTTCTTCTTCCCCCT  219

seq1  TTAAGATTTT-AAGT-ACAAATACTCTTTAGTTTAGATATTTTCTGCTTC  295
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTTAAAGTAACAAATACTCTTTAGTTTAGATATTTTCTGCTTC  269

seq1  TCT-CCAATCCCATGTCACAAAATCTCACACAATCAACTGATACTACAAA  344
      ||| |||||||||||||   ||||||||||||||||||||||||||||||
seq2  TCTCCCAATCCCATGTCCACAAATCTCACACAATCAACTGATACTACAAA  319

seq1  TTTGATTTAAAATTTTTGTTATGAAAGAAAAATGAAGGATGAAAATCAAA  394
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTT-AAATTTTTGTTATGAAAGAAAAATGAAGGATGAAAATCAAA  368

seq1  ATGAAATGAAGCTCATGTGATGCAAAATGCCTAGCCTCTCTTTCTCTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGAAGCTCATGTGATGCAAAATGCCTAGCCTCTCTTTCTCTCCT  418

seq1  TTTCCTGAACTGAGGTCTTCACATAGTACTGGGGAACACATTGGAATACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAACTGAGGTCTTCACATAGTACTGGGGAACACATTGGAATACA  468

seq1  GGACATCTACACTTGCCCAGAAGAGCTATATAGGCTCCCTCCTGTGAATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTACACTTGCCCAGAAGAGCTATATAGGCTCCCTCCTGTGAATG  518

seq1  GGGCAGTAGGGACTCTGTTTCCAAGTCACAATCATATTTTCCTGCTGAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTAGGGACTCTGTTTCCAAGTCACAATCATATTTTCCTGCTGAAG  568

seq1  AAACCCTCCTGTCAGTGGAAGAAATTACACATAGATTTATGTATGCTATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTCCTGTCAGTGGAAGAAATTACACATAGATTTATGTATGCTATG  618

seq1  GATGGTGATGATGATGAATGGTTGTTTGATACCTCATGATTGAAACTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGATGATGATGAATGGTTGTTTGATACCTCATGATTGAAACTTTG  668

seq1  TAGCTTATTTTTAAGTGGATATGCAATTGATGCTTATTATTTTGATAAAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTTTTAAGTGGATATGCAATTGATGCTTATTATTTTGATAAAG  718

seq1  TTCATATGTAATAAATGAAATACTTATGAGCAATATTAACTAACAAAGGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGTAATAAATGAAATACTTATGAGCAATATTAACTAACAAAGGT  768

seq1  ATTTCCTTGAAATGATAGTTTTAATATAAGTGTATACTTCAGAGTGGCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTGAAATGATAGTTTTAATATAAGTGTATACTTCAGAGTGGCTA  818

seq1  TAAAAGTATGTACTCCTACAAGCAATAGAGAAGTGGTCACCTTGCTCCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATGTACTCCTACAAGCAATAGAGAAGTGGTCACCTTGCTCCAC  868

seq1  ATCCTCATCAGCATTATTCATCACTTGTGACTTTAGATTTAGCCATTCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATCAGCATTATTCATCACTTGTGACTTTAGATTTAGCCATTCTG  918

seq1  ACATTTGTAAGACAGAATCCTAGACTCATTTTGATTTCCATTTCATGGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTAAGACAGAATCCTAGACTCATTTTGATTTCCATTTCATGGTC  968

seq1  AGCTAAGGATAATGAACACTCCTATAAGTGCTTCTTTTTCAATAGTGATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGATAATGAACACTCCTATAAGTGCTTCTTTTTCAATAGTGATT  1018

seq1  CCTTTGTTAAGAATTC  1060
      ||||||||||||||||
seq2  CCTTTGTTAAGAATTC  1034