BAC Information

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BAC

Clone NameB6Ng01-036P09
Chromosome12 (Build37)
Map Location 21,696,674 - 21,875,374
singlet/doubletdoublet
Overlap gene6030426L16Rik, LOC434693
Upstream geneLOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796
Downstream geneEG668645, EG668646, LOC100043416, LOC668650, EG668496, LOC668653, EG432637, LOC668656, EG629133, EG668660, EG668662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036P09.bB6Ng01-036P09.g
ACCDH864976DH864977
length630918
definitionDH864976|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P09, 5' end.DH864977|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,696,674 - 21,697,303)(21,874,448 - 21,875,374)
sequence
gaattcattcccacagttcaaaactcagcttgcaagctttaaaattcaag
agcactccttcccttgccatgttgagcatatcttcaacacttcccatggg
accttgttctgttatagcatgtggtagtttagatgtgaaatgtctgccga
agacacaagttttgaagaattgctcctctaggtgtggcctgaggaagaaa
gttagatcattgggagcatgcctttgaggcactgttgggaccttgctccc
cttcccctccctgcttctctgccatggtaaacctgctaaatgctgctacc
atgatgcactaagttgctagatgcccaaagctacagggccaagcaaccgt
ggactgaaaccatgagcccaaaactaactctttcctcctaaattgattct
ttcatttcatcacagtgatgtaaaagtgagtgacacacagcactctccac
tcacagatgagtttgcagcagatcaggtatataatcctttttcactagat
gagtttgcagcagatcaggtatataatcctttcagctttatgtccctaaa
acccagcacttgatttaattgtattttttgaatggatacatttatactgg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccagtcctgacttccttgatgaagtcaggactttccgggtgtaag
cacagagtgcatgcagggagcccgggattacagtgacaagcctagattct
aagtttcagctctgtactgtttgaacaagctgctgacaaggggaactggg
atgtgcactcactggttgttggtcactgtcctctgagttgaaggtttcct
agagtttgggcaggaggcgcatgtggcagtcataagatggcaagggtttg
ccctccctgaattatgtgatttctcagttcctcttcactgggccaagggt
gtataagaagtacttggtaatttctttcttccttccttccttccttcctt
cctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttcttcctttctctctgtctgtctgttcatctatcta
tgtctgtctatctatccaactatctatctatctatctatgtctatatatc
caactatctgtctatctatctatctatctatctatctatctatctatcta
tagatatagcctggccactattccctgtagatgcagtgctgagggtagag
gtcagggcctcaggtatgcttagcattcactccattgagctacatcctga
ctacctttcaataattgattttatttctttctgagacagttctctctata
taaccttgactagcctggaacttactatgtaggccaggctggcctggaac
tcacagagatctgcctgtctctgtttctcaagtgctgggattaaaatcac
atgccatgatacatggcccaagattgaatttaaaacatgtgatgttaata
tattatcaatgagctgcacttgtgacatgcttatacagcactgggagtag
agcagtgatttgtgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_21696674_21697303
seq2: B6Ng01-036P09.b_48_677

seq1  GAATTCATTCCCACAGTTCAAAACTCAGCTTGCAAGCTTTAAAATTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCACAGTTCAAAACTCAGCTTGCAAGCTTTAAAATTCAAG  50

seq1  AGCACTCCTTCCCTTGCCATGTTGAGCATATCTTCAACACTTCCCATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCCTTCCCTTGCCATGTTGAGCATATCTTCAACACTTCCCATGGG  100

seq1  ACCTTGTTCTGTTATAGCATGTGGTAGTTTAGATGTGAAATGTCTGCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTCTGTTATAGCATGTGGTAGTTTAGATGTGAAATGTCTGCCGA  150

seq1  AGACACAAGTTTTGAAGAATTGCTCCTCTAGGTGTGGCCTGAGGAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAGTTTTGAAGAATTGCTCCTCTAGGTGTGGCCTGAGGAAGAAA  200

seq1  GTTAGATCATTGGGAGCATGCCTTTGAGGCACTGTTGGGACCTTGCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATCATTGGGAGCATGCCTTTGAGGCACTGTTGGGACCTTGCTCCC  250

seq1  CTTCCCCTCCCTGCTTCTCTGCCATGGTAAACCTGCTAAATGCTGCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCCCTGCTTCTCTGCCATGGTAAACCTGCTAAATGCTGCTACC  300

seq1  ATGATGCACTAAGTTGCTAGATGCCCAAAGCTACAGGGCCAAGCAACCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCACTAAGTTGCTAGATGCCCAAAGCTACAGGGCCAAGCAACCGT  350

seq1  GGACTGAAACCATGAGCCCAAAACTAACTCTTTCCTCCTAAATTGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAACCATGAGCCCAAAACTAACTCTTTCCTCCTAAATTGATTCT  400

seq1  TTCATTTCATCACAGTGATGTAAAAGTGAGTGACACACAGCACTCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCATCACAGTGATGTAAAAGTGAGTGACACACAGCACTCTCCAC  450

seq1  TCACAGATGAGTTTGCAGCAGATCAGGTATATAATCCTTTTTCACTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATGAGTTTGCAGCAGATCAGGTATATAATCCTTTTTCACTAGAT  500

seq1  GAGTTTGCAGCAGATCAGGTATATAATCCTTTCAGCTTTATGTCCCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCAGCAGATCAGGTATATAATCCTTTCAGCTTTATGTCCCTAAA  550

seq1  ACCCAGCACTTGATTTAATTGTATTTTTTGAATGGATACATTTATACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCACTTGATTTAATTGTATTTTTTGAATGGATACATTTATACTGG  600

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  630
      ||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  630

seq1: chr12_21874448_21875374
seq2: B6Ng01-036P09.g_66_983 (reverse)

seq1  AACTCACAAATCCACCTGCCTCTACCTCCCAAGTGCTGTTATTAAAGGCA  50
      ||||||||||||   ||| ||||| ||||| |||||||    || | |||
seq2  AACTCACAAATC--ACTG-CTCTA-CTCCC-AGTGCTG----TATAAGCA  41

seq1  TGTTCCACCAGTGCCAGCTCATTTGATAATAATATAAACATTCACATGTT  100
      |||  ||| |||| ||||||| |||||||| |||| |||| |||||||||
seq2  TGT--CACAAGTG-CAGCTCA-TTGATAAT-ATATTAACA-TCACATGTT  85

seq1  TTAAATTCAATTCTTGGGCCATGTATCATGGCATGTGATTTTAATCCCAG  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCAA-TCTTGGGCCATGTATCATGGCATGTGATTTTAATCCCAG  134

seq1  CACTTGAGAAACAGAGACAGGCAGATCTCTGTGAGTTCCAGGCCAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGAAACAGAGACAGGCAGATCTCTGTGAGTTCCAGGCCAGCCTG  184

seq1  GCCTACATAGTAAGTTCCAGGCTAGTCAAGGTTATATAGAGAGAACCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTACATAGTAAGTTCCAGGCTAGTCAAGGTTATATAGAGAGAA-CTGT  233

seq1  CTCAGAAAGAAATAAAATCAATTATTGAAAGGTAGTCAGGATGTAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGAAATAAAATCAATTATTGAAAGGTAGTCAGGATGTAGCTCA  283

seq1  ATGGAGTGAATGCTAAGCATACCTGAGGCCCTGACCTCTACCCTCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGAATGCTAAGCATACCTGAGGCCCTGACCTCTACCCTCAGCAC  333

seq1  TGCATCTACAGGGAATAGTGGCCAGGCTATATCTATAGATAGATAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTACAGGGAATAGTGGCCAGGCTATATCTATAGATAGATAGATAG  383

seq1  ATAGATAGATAGATAGATAGATAGACAGATAGTTGGATATATAGACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGACAGATAGTTGGATATATAGACATAG  433

seq1  ATAGATAGATAGATAGTTGGATAGATAGACAGACATAGATAGATGAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGTTGGATAGATAGACAGACATAGATAGATGAACAG  483

seq1  ACAGACAGAGAGAAAGG--------AAGAAAGAAAGAAAGAAAGAAAGAA  542
      |||||||||||||||||        |||||||||||||||||||||||||
seq2  ACAGACAGAGAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  533

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAG  583

seq1  GAAGGAAGAAAGAAATTACCAAGTACTTCTTATACACCCTTGGCCCAGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAAGAAATTACCAAGTACTTCTTATACACCCTTGGCCCAGTG  633

seq1  AAGAGGAACTGAGAAATCACATAATTCAGGGAGGGCAAACCCTTGCCATC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAACTGAGAAATCACATAATTCAGGGAGGGCAAACCCTTGCCATC  683

seq1  TTATGACTGCCACATGCGCCTCCTGCCCAAACTCTAGGAAACCTTCAACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTGCCACATGCGCCTCCTGCCCAAACTCTAGGAAACCTTCAACT  733

seq1  CAGAGGACAGTGACCAACAACCAGTGAGTGCACATCCCAGTTCCCCTTGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAGTGACCAACAACCAGTGAGTGCACATCCCAGTTCCCCTTGT  783

seq1  CAGCAGCTTGTTCAAACAGTACAGAGCTGAAACTTAGAATCTAGGCTTGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTTGTTCAAACAGTACAGAGCTGAAACTTAGAATCTAGGCTTGT  833

seq1  CACTGTAATCCCGGGCTCCCTGCATGCACTCTGTGCTTACACCCGGAAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAATCCCGGGCTCCCTGCATGCACTCTGTGCTTACACCCGGAAAG  883

seq1  TCCTGACTTCATCAAGGAAGTCAGGACTGGAATTC  927
      |||||||||||||||||||||||||||||||||||
seq2  TCCTGACTTCATCAAGGAAGTCAGGACTGGAATTC  918