BAC Information

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BAC

Clone NameB6Ng01-037J08
Chromosome18 (Build37)12 (Build37)
Map Location 13,092,191 - 13,092,44521,009,811 - 21,010,895
singlet/doubletsingletsinglet
Overlap geneOsbpl1a
Upstream geneCables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, LOC435556
Downstream geneImpact, Hrh4, EG383354, LOC665379, LOC100040358, Zfp521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J08.bB6Ng01-037J08.g
ACCDH865400DH865401
length6981,076
definitionDH865400|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J08, 5' end.DH865401|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,092,191 - 13,092,445)(21,009,811 - 21,010,895)
sequence
gaattcattctgtagaccagactgtcctcaagttcacaaagatctacctg
cctctgcctcccaagtgctggaattaaggtgcgtatcaccacatccagca
taagaacagacttcttaaagttgtcctataactgctacacgtttgcatga
gatgtgtaccacaatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgcacgcgcacaattaaaaaataagctttaaaaatatacctaactcaatc
attcagaaaattaccattctggaaaccaaaggatatttttaaatgatcaa
cacttgatccagcaattagacaagaaaaagaaataaagcagccagctcat
cttacagctatctctatagatggtgttgtgttacagaaaatccgaagact
atacacacaacacagaagcagaaccagtaagcaaatgcatcaaggttcag
cttctatttagtgtacaagcatcaactgtatttctatacactaataacct
aggaacaaagctaagaaaatgattccattcacaatagcatccagaagaat
aaaatatttaagaacaaattttaaaaagtaatgtaaagatatatacagta
ataaccataaaacattgctaaattaaatttaaaaaaaatcaacgggaaca
catctttactacagagatacaacgatggtttgctggtgtctatgttcc
gaattccaggcatggtgagcacagggttactgcccacagagggtaggggc
agggtgctgagtagtggaagctggggtggtgagtcctctctggggctgga
tgggaagtataagccatatgtgagcacctgtgaggtctctcctgttgctc
ctcacttgctccatcaggggtgacctctaataacttgcctatcattgccc
aaatcgtttggaccttagttaagctgacttgtgaaaacaagggtggtttc
tttgagtctgtagcacaggtgtccaaacccctttgtcttttagtatacat
tacaaagacaggtaaaaatctaataggtctgatttcatacattatacttg
tttttgttttgttattttttttttctgttgctgtttttttcatatttttt
ttttgcatcacatgtttaatgagttgattattacttgggaaagggacttt
aataatttcagaatatttttgtggttttattgaaaaattatagacctctg
agctgatattcttctattccaattgtttgtaattttcgccttcacatatt
ttgcagaagtcacagttggttattgccgtgaaacttttagaatccacatt
tttaactgagatatcaattttttctcttagtcttgaatccctgagattct
gtcttcctttcctgttctgtgggtgaaccttgcctctgtagttgtcagtg
tacaggtaatctcatgtcctgctcttagggacttagcaacagcttatgtc
atttcctgcctccatcccctgtgtctgttgtcaggcgtgctttatataca
tcagccaccagctatagcagctctctatttttgttccctgtctctgttct
ctgcacatgcacactctctgtcatctctccctcatggctctctttctcct
ccctgtctgtgtgcctgtctgcaggtcctcttgtgtacttctatcccttc
cccaggttctcactcctctccttccccaaacacctcttttgcactttatc
tgtgggatgctttatttctcgacctgctgggatgggagagctggatttct
gggtgcaatgttcctggctgttactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_13092191_13092445
seq2: B6Ng01-037J08.b_86_468 (reverse)

seq1  GTTCTGCTTCTGTGTT-----------------CATTTCTAGATTAAAAA  33
      ||||||||||||||||                   |||||  |  | || 
seq2  GTTCTGCTTCTGTGTTGTGTGTATAGTCTTCGGATTTTCTGTAACACAAC  50

seq1  ACAA-----------------AAGCAGAG-------------------TT  47
      || |                 |||  |||                   ||
seq2  ACCATCTATAGAGATAGCTGTAAGATGAGCTGGCTGCTTTATTTCTTTTT  100

seq1  CT-------------CATCCAGAG----GCAT-----AACGTACT-----  70
      ||              ||| || |     |||     ||  | ||     
seq2  CTTGTCTAATTGCTGGATCAAGTGTTGATCATTTAAAAATATCCTTTGGT  150

seq1  ---CACAGCTGTCACCTGCT-AATG---CAGGAAGGGAGA----AAAAGC  109
         || |   || |  | || ||||    ||  ||| | |     |||||
seq2  TTCCAGAATGGTAATTTTCTGAATGATTGAGTTAGGTATATTTTTAAAGC  200

seq1  AT-TTCATTTGTAGTTCGTG-GCAGACA---------------------A  136
       | ||  ||  | || || | ||| |||                     |
seq2  TTATTTTTTAATTGTGCGCGTGCACACACACACACACACACACACACACA  250

seq1  AAGAAAT---TTGTTTTGCAGAGC-----CAAAAAAATTAAAGATA-AGG  177
       | | ||   ||||  | || | |     ||||    |   || || |||
seq2  CACACATACATTGTGGTACACATCTCATGCAAACGTGTAGCAGTTATAGG  300

seq1  ACA----TAAGAATCC--AACCGAAGCTGGGCGTGGTGGTGCATGCCTTT  221
      |||    ||||||  |    |  | |||||  |||||| | |   || ||
seq2  ACAACTTTAAGAAGTCTGTTCTTATGCTGGATGTGGTGATACGCACC-TT  349

seq1  AATCCCAGCACTCGGGAGGCAGAGGCAGGCAGAT  255
      ||| |||||||| |||||||||||||||| ||||
seq2  AATTCCAGCACTTGGGAGGCAGAGGCAGGTAGAT  383

seq1: chr12_21009811_21010895
seq2: B6Ng01-037J08.g_70_1145

seq1  GAATTCCAGGCATGGTGAGCACAGGGTTACTGCCCACAGAGGGTAGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATGGTGAGCACAGGGTTACTGCCCACAGAGGGTAGGGGC  50

seq1  AGGGTGCTGAGTAGTGGAAGCTGGGGTGGTGAGTCCTCTCTGGGGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTGAGTAGTGGAAGCTGGGGTGGTGAGTCCTCTCTGGGGCTGGA  100

seq1  TGGGAAGTATAAGCCATATGTGAGCACCTGTGAGGTCTCTCCTGTTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTATAAGCCATATGTGAGCACCTGTGAGGTCTCTCCTGTTGCTC  150

seq1  CTCACTTGCTCCATCAGGGGTGACCTCTAATAACTTGCCTATCATTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGCTCCATCAGGGGTGACCTCTAATAACTTGCCTATCATTGCCC  200

seq1  AAATCGTTTGGACCTTAGTTAAGCTGACTTGTGAAAACAAGGGTGGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTTTGGACCTTAGTTAAGCTGACTTGTGAAAACAAGGGTGGTTTC  250

seq1  TTTGAGTCTGTAGCACAGGTGTCCAAACCCCTTTGTCTTTTAGTATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTGTAGCACAGGTGTCCAAACCCCTTTGTCTTTTAGTATACAT  300

seq1  TACAAAGACAGGTAAAAATCTAATAGGTCTGATTTCATACATTATACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGACAGGTAAAAATCTAATAGGTCTGATTTCATACATTATACTTG  350

seq1  TTTTTGTTTTGTTATTTTTTTTTTCTGTTGCTGTTTTTTTCATATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTATTTTTTTTTTCTGTTGCTGTTTTTTTCATATTTTTT  400

seq1  TTTTGCATCACATGTTTAATGAGTTGATTATTACTTGGGAAAGGGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATCACATGTTTAATGAGTTGATTATTACTTGGGAAAGGGACTTT  450

seq1  AATAATTTCAGAATATTTTTGTGGTTTTATTGAAAAATTATAGACCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCAGAATATTTTTGTGGTTTTATTGAAAAATTATAGACCTCTG  500

seq1  AGCTGATATTCTTCTATTCCAATTGTTTGTAATTTTCGCCTTCACATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATTCTTCTATTCCAATTGTTTGTAATTTTCGCCTTCACATATT  550

seq1  TTGCAGAAGTCACAGTTGGTTATTGCCGTGAAACTTTTAGAATCCACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAGTCACAGTTGGTTATTGCCGTGAAACTTTTAGAATCCACATT  600

seq1  TTTAACTGAGATATCAATTTTTTCTCTTAGTCTTGAATCCCTGAGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGAGATATCAATTTTTTCTCTTAGTCTTGAATCCCTGAGATTCT  650

seq1  GTCTTCCTTTCCTGTTCTGTGGGTGAACCTTGCCTCTGTAGTTGTCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTTCCTGTTCTGTGGGTGAACCTTGCCTCTGTAGTTGTCAGTG  700

seq1  TACAGGTAATCTCATGTCCTGCTCTTAGGGACTTAGCAACAGCTTATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAATCTCATGTCCTGCTCTTAGGGACTTAGCAACAGCTTATGTC  750

seq1  ATTTCCTGCCTCCATCCCCTGTGTCTGTTGTCAGGCGTGCTTTATATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGCCTCCATCCCCTGTGTCTGTTGTCAGGCGTGCTTTATATACA  800

seq1  TCAGCCACCAGCTATAGCAGCTCTCTATTTTTGTTCCCTGTCTCTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACCAGCTATAGCAGCTCTCTATTTTTGTTCCCTGTCTCTGTTCT  850

seq1  CTGCACATGCACACTCTCTGTCATCTCTCCCCTCATGGCTCTCTTTCTCC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCACATGCACACTCTCTGTCATCTCT-CCCTCATGGCTCTCTTTCTCC  899

seq1  TCCCTGTCTGTGTGCCTGTCTGCAGGTCCTCTTGTGTACTTCTATCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTGTGTGCCTGTCTGCAGGTCCTCTTGTGTACTTCTATCCCTT  949

seq1  CCCCAGGTTCTCACTCCTCTCCCTTCCCCCAAACAACCTCTTTTGCACTT  1000
      ||||||||||||||||||||||  | |||||||| |||||||||||||||
seq2  CCCCAGGTTCTCACTCCTCTCC--TTCCCCAAAC-ACCTCTTTTGCACTT  996

seq1  TATCTGTTGGATGCTTTAATTTCTCAGACCTGCTGTGATGGGAGAGCTTG  1050
      ||||||| ||||||||| ||||||| ||||||||| ||||||||||| ||
seq2  TATCTGTGGGATGCTTT-ATTTCTC-GACCTGCTGGGATGGGAGAGC-TG  1043

seq1  GATTTCTTGGTTGCAATTGTTCCTGGCTGTTACTC  1085
      |||||| ||| ||||| ||||||||||||||||||
seq2  GATTTC-TGGGTGCAA-TGTTCCTGGCTGTTACTC  1076