BAC Information

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BAC

Clone NameB6Ng01-037J11
Chromosome12 (Build37)
Map Location 86,916,027 - 87,050,155
singlet/doubletdoublet
Overlap geneJundm2, LOC100042073, Batf
Upstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124
Downstream geneBC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J11.bB6Ng01-037J11.g
ACCDH865404DH865405
length1,112825
definitionDH865404|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J11, 5' end.DH865405|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,916,027 - 86,917,152)(87,049,338 - 87,050,155)
sequence
gaattcatcttgatggaaaaggtgtggctcactagagattgccgagctga
caatctctcccatcctggctagccagaagccaggctgagtctcaccctta
aggcctgggccctagcaactcacttctgccatgcaagtcttacctcttta
aagttctacaaccaccaaaactaccaccatacaggtgttcaaacacgagt
gtgtgggactcatttcccatccaaccttattctctttccagtggctggga
catgggtgtggtggcagatctcaagcaggctcttggcagtgtgcacacac
atagctcagtgaaggagcagattgtgaacagccatgcactatttgttttt
aacacttgcaaaataaatgtgtattttgtttacactacagttatctaaca
ttttttgacccagagcaaaacacaaacttgaatggcatatttattttctc
aatctctcttactgctaagaaaggacacgaaaccaagttcaattaaagga
agccttcttgcccagggcagtcttagcaggaagctcaagttcctgagaca
gcggtggtgacatccagtgtggagtgtggttgaggcaagatctaggcttt
gttggcagcactgggacctcgctgagtgctatatttagtggtatggctcc
cactactgtcctcctgttcacccaacgattctgtgacctaatattctgct
aataaattctgccactcagtcatcaatgtagtcttagcccctgtcaaaag
actttttaataaaagttcccaaggcagttagttggctctgccatcaaatt
agtcactgaataaaatgtgttaaaagtctatgtgaggcatgagtcccatc
taaaaagtcagaattttctcacacctttgttctatagatacttctgggac
agaacgagttctttgaaatagctggtatctcctgtttgtctgaagtgtgt
catctgcttgcagatccttgatatttgggggccgaccaggaccaattaaa
cacagcatagagtttgtcagagcacacccgaagggcatggatactcattg
tcttaaagtgatttaacaaaaactcagctctttaacttggtcaggatgag
gaaaggacaaaa
gaattcatagagtctggaagagctccctgaagccaagaaggaaaaccagg
tgccaaatcaagagaaagtagttcgcacgatgctgatgggagaagtgagg
gaagccgctttccagggctggttttttagaaaatatttatttagaaaact
atccaccccctgccctcctccctctgtgctgtgtattttgggcatcattc
atgacagtccagggttgacttgtcattttttgggtccagtacattggctc
gacttccctgggagagtccagtacattgactatacttccctgggaggcct
taagtccctctgaccactacagttcttgtgttcaatacttgtccaggcct
ctgccactgggcctctgggtagaggtatgagggcagcccggcctcagttt
acatgcccctccaagggatcacgggagtagcatcgcccttcttgtccaga
aggtcagggctggaagcgtggcgagctgatgtgaggctggtggaaggcat
gggcactgtataccacctcggggggcgagggggtgccactggccagcacg
gagcacaggggctcgtggctgctcagcactgatgtgaagtacttgagctc
ctcggtgagctgtttgatctcttttgcggagagctgcgttctgtttctcc
aggtcctcactctcctgtaaagagacaatcggcatgatgactcgcgtcgg
gggtcggggggaaggttggtggtacatgatggcagaaaggtggtacacag
ggacttaaatttttctattatcacagcccatgaagagggcaactgaaaat
cctgtgcaccctacactacacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86916027_86917152
seq2: B6Ng01-037J11.b_46_1157

seq1  GAATTCATCTTGATGGAAAAGGTGTGGCTCACTAGAGATTGCCGAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGATGGAAAAGGTGTGGCTCACTAGAGATTGCCGAGCTGA  50

seq1  CAATCTCTCCCATCCTGGCTAGCCAGAAGCCAGGCTGAGTCTCACCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTCCCATCCTGGCTAGCCAGAAGCCAGGCTGAGTCTCACCCTTA  100

seq1  AGGCCTGGGCCCTAGCAACTCACTTCTGCCATGCAAGTCTTACCTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGGCCCTAGCAACTCACTTCTGCCATGCAAGTCTTACCTCTTTA  150

seq1  AAGTTCTACAACCACCAAAACTACCACCATACAGGTGTTCAAACACGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTACAACCACCAAAACTACCACCATACAGGTGTTCAAACACGAGT  200

seq1  GTGTGGGACTCATTTCCCATCCAACCTTATTCTCTTTCCAGTGGCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGACTCATTTCCCATCCAACCTTATTCTCTTTCCAGTGGCTGGGA  250

seq1  CATGGGTGTGGTGGCAGATCTCAAGCAGGCTCTTGGCAGTGTGCACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGTGGTGGCAGATCTCAAGCAGGCTCTTGGCAGTGTGCACACAC  300

seq1  ATAGCTCAGTGAAGGAGCAGATTGTGAACAGCCATGCACTATTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAGTGAAGGAGCAGATTGTGAACAGCCATGCACTATTTGTTTTT  350

seq1  AACACTTGCAAAATAAATGTGTATTTTGTTTACACTACAGTTATCTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGCAAAATAAATGTGTATTTTGTTTACACTACAGTTATCTAACA  400

seq1  TTTTTTGACCCAGAGCAAAACACAAACTTGAATGGCATATTTATTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGACCCAGAGCAAAACACAAACTTGAATGGCATATTTATTTTCTC  450

seq1  AATCTCTCTTACTGCTAAGAAAGGACACGAAACCAAGTTCAATTAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTTACTGCTAAGAAAGGACACGAAACCAAGTTCAATTAAAGGA  500

seq1  AGCCTTCTTGCCCAGGGCAGTCTTAGCAGGAAGCTCAAGTTCCTGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTGCCCAGGGCAGTCTTAGCAGGAAGCTCAAGTTCCTGAGACA  550

seq1  GCGGTGGTGACATCCAGTGTGGAGTGTGGTTGAGGCAAGATCTAGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGTGACATCCAGTGTGGAGTGTGGTTGAGGCAAGATCTAGGCTTT  600

seq1  GTTGGCAGCACTGGGACCTCGCTGAGTGCTATATTTAGTGGTATGGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGCACTGGGACCTCGCTGAGTGCTATATTTAGTGGTATGGCTCC  650

seq1  CACTACTGTCCTCCTGTTCACCCAACGATTCTGTGACCTAATATTCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGTCCTCCTGTTCACCCAACGATTCTGTGACCTAATATTCTGCT  700

seq1  AATAAATTCTGCCACTCAGTCATCAATGTAGTCTTAGCCCCTGTCAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCTGCCACTCAGTCATCAATGTAGTCTTAGCCCCTGTCAAAAG  750

seq1  ACTTTTTAATAAAAGTTCCCAAGGCAGTTAGTTGGCTCTGCCATCAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAATAAAAGTTCCCAAGGCAGTTAGTTGGCTCTGCCATCAAATT  800

seq1  AGTCACTGAATAAAATGTGTTAAAAGTCTATGTGAGGCATGAGTCCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAATAAAATGTGTTAAAAGTCTATGTGAGGCATGAGTCCCATC  850

seq1  T-AAAAGTCAGAATTTTCTCACACCTTTGTTTCTATAGATACTTCTGGGA  899
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAAAAGTCAGAATTTTCTCACACCTTTG-TTCTATAGATACTTCTGGGA  899

seq1  CAGAACGAGGTTCTTTGAAATAGCTGGTATCTCCTGTTGTACGGAAGTGT  949
      |||||||| |||||||||||||||||||||||||||||   | |||||||
seq2  CAGAACGA-GTTCTTTGAAATAGCTGGTATCTCCTGTTTGTCTGAAGTGT  948

seq1  GCCATCTGCTTGCAGAAGCCTTGATATTTGGGGGCCGACCAGGACCAAAT  999
      | ||||||||||||| | |||||||||||||||||||||||||||| |||
seq2  GTCATCTGCTTGCAG-ATCCTTGATATTTGGGGGCCGACCAGGACC-AAT  996

seq1  TAAACACAGCATAGGAGTTTGTCAGAAGCACACCCGAAGGGCAGGGATAC  1049
      ||||||||||||| ||||||||||| ||||||||||||||||| ||||||
seq2  TAAACACAGCATA-GAGTTTGTCAG-AGCACACCCGAAGGGCATGGATAC  1044

seq1  TTCATTTGTCCTAGAGTGATTTACACAAAAAACCTCAGCTCTTTAAAACT  1099
       ||| ||||| || ||||||||| |||||||  |||||||||||  ||||
seq2  -TCA-TTGTCTTAAAGTGATTTA-ACAAAAA--CTCAGCTCTTT--AACT  1087

seq1  TTGTCAGGAATGAGGAAAAAGACAAAA  1126
      | |||||| |||||| ||| |||||||
seq2  TGGTCAGG-ATGAGG-AAAGGACAAAA  1112

seq1: chr12_87049338_87050155
seq2: B6Ng01-037J11.g_68_891 (reverse)

seq1  TATGTGTA-TGT---GTGCACAGGAATTCTCAGTTGCCCTCTTCAT-GGC  45
      |||||||| |||   ||||||||| ||| ||||||||||||||||| |||
seq2  TATGTGTAGTGTAGGGTGCACAGG-ATTTTCAGTTGCCCTCTTCATGGGC  49

seq1  TGTGCTAATAGAAAACTTTAGCTCCCTGTGTACCACCTTTCTGCCATCAT  95
      |||| |||||||||| ||||  ||||||||||||||||||||||||||||
seq2  TGTGATAATAGAAAAATTTAAGTCCCTGTGTACCACCTTTCTGCCATCAT  99

seq1  GTACCACCAACCTT-CCCCCGACCCCCGACGCGAGTCATCATGCCGATTG  144
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTACCACCAACCTTCCCCCCGACCCCCGACGCGAGTCATCATGCCGATTG  149

seq1  TCTCTTTACAGGAGAGTGAGGACCTGGAGAAACAGAACGCAGCTCTCCGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTACAGGAGAGTGAGGACCTGGAGAAACAGAACGCAGCTCTCCGC  199

seq1  -AAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTTCACATCAGTGC  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGATCAAACAGCTCACCGAGGAGCTCAAGTACTTCACATCAGTGC  249

seq1  TGAGCAGCCACGAGCCCCTGTGCTCCGTGCTGGCCAGTGGCACCCCCTCG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCACGAGCCCCTGTGCTCCGTGCTGGCCAGTGGCACCCCCTCG  299

seq1  CCCCCCGAGGTGGTATACAGTGCCCATGCCTTCCACCAGCCTCACATCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGAGGTGGTATACAGTGCCCATGCCTTCCACCAGCCTCACATCAG  349

seq1  CTCGCCACGCTTCCAGCCCTGACCTTCTGGACAAGAAGGGCGATGCTACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCACGCTTCCAGCCCTGACCTTCTGGACAAGAAGGGCGATGCTACT  399

seq1  CCCGTGATCCCTTGGAGGGGCATGTAAACTGAGGCCGGGCTGCCCTCATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGATCCCTTGGAGGGGCATGTAAACTGAGGCCGGGCTGCCCTCATA  449

seq1  CCTCTACCCAGAGGCCCAGTGGCAGAGGCCTGGACAAGTATTGAACACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCCAGAGGCCCAGTGGCAGAGGCCTGGACAAGTATTGAACACAA  499

seq1  GAACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGTCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTAGTGGTCAGAGGGACTTAAGGCCTCCCAGGGAAGTATAGTCAA  549

seq1  TGTACTGGACTCTCCCAGGGAAGTCGAGCCAATGTACTGGACCCAAAAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGACTCTCCCAGGGAAGTCGAGCCAATGTACTGGACCCAAAAAA  599

seq1  TGACAAGTCAACCCTGGACTGTCATGAATGATGCCCAAAATACACAGCAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTCAACCCTGGACTGTCATGAATGATGCCCAAAATACACAGCAC  649

seq1  AGAGGGAGGAGGGCAGGGGGTGGATAGTTTTCTAAATAAATATTTTCTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGAGGGCAGGGGGTGGATAGTTTTCTAAATAAATATTTTCTAA  699

seq1  AAAACCAGCCCTGGAAAGCGGCTTCCCTCACTTCTCCCATCAGCATCGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGCCCTGGAAAGCGGCTTCCCTCACTTCTCCCATCAGCATCGTG  749

seq1  CGAACTACTTTCTCTTGATTTGGCACCTGGTTTTCCTTCTTGGCTTCAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTACTTTCTCTTGATTTGGCACCTGGTTTTCCTTCTTGGCTTCAGG  799

seq1  GAGCTCTTCCAGACTCTATGAATTC  818
      |||||||||||||||||||||||||
seq2  GAGCTCTTCCAGACTCTATGAATTC  824