BAC Information

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BAC

Clone NameB6Ng01-038C02
Chromosome12 (Build37)
Map Location 28,508,271 - 28,509,371
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038C02.b
ACCDH865792
length1,086
definitionDH865792|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C02, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgccttatgcttccagatcacagttcatgactgagggaaat
cagaacaggaattcaagcaggaactgaagcagtgagcgtgaggggactct
tgctggttcattcccaggcttgtgttcagttatctttcttatgcagacca
cctgcccaagaaacaatgctatccacagtgggctcacatcaatcaggagt
caagtcaggccagccttcagttgagactcccttttcaggtgactctacac
tgtgtgagattgacaaggttaagtagggcactttgtttctactgataggt
gctgcttaggtggtggagttactgctgtgaagttaatactagctaaggtc
acctgggaagagagaatctcacctgagaaaatgcctatatcaggttggtc
tgtcaacaagactgaagggtattttcttgattatccattagtgtgggaag
gcctggcctactgtggtcagtgtcacctttgaacagttggtcctgggtga
gcagactcagcaatccatggggagtaagtcagtaagctgggtccccacat
gacctctgcttcaatttctgcctctatgttcctgcctttcttgaattcca
acatgacctccctcttgatggactgtaattgggacatgtaagctcaataa
acattttactccttaagttacaaaaaccaaggggtgcgggccttctgaca
gaatcaacactccaggagtgttactaaaattttgtttaaatacaagtgcc
acccactgctgttcttagatcacagcaaacgctgctctgtgtatattgcc
cttaactttcctgggagtgaattcaaccttctttcatttgcagtgatcag
tataggtcactgataggggaagagcggatgacaagggtcaagcgccacaa
gcatctagctgagtgagcagtctcattgtaatgttatcttcccgtgtgtg
tgtcttcctgctactgtatccctttcggagataccaccggttcgcgagaa
attttcagtgtggaattcttctccagacttctggacctactgactaactg
tgttctttaataatgatgggaggcttgaacagtgcg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28508271_28509371
seq2: B6Ng01-038C02.b_42_1126 (reverse)

seq1  GCACATGTTCAAG-CTCCCATTCATTATTTAAAGAAACACAGTTAGTCAG  49
      |||| |||||||| |||||| |||||| |||||| |||||||||||||||
seq2  GCAC-TGTTCAAGCCTCCCA-TCATTA-TTAAAG-AACACAGTTAGTCAG  46

seq1  TAGGCTACAGGAAGTCTGGGAAGAAGGAAATCCACACATGAAAATTATCT  99
      |||| | || |||||||||  |||| ||| ||||||| |||||||| |||
seq2  TAGG-TCCA-GAAGTCTGG--AGAA-GAATTCCACAC-TGAAAATT-TCT  89

seq1  CAGCGAACCGGTGTTATCTGCTGAAAGGGGATACAGTAGCCAAGAAAGAC  149
      | ||||||||||| ||||| | |||| |||||||||||||  || |||||
seq2  C-GCGAACCGGTGGTATCT-CCGAAA-GGGATACAGTAGC--AGGAAGAC  134

seq1  ACACACACCGGAAAGATAACATTACAATGAGACTGCTCACTCAGCTAGAT  199
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  ACACACA-CGGGAAGATAACATTACAATGAGACTGCTCACTCAGCTAGAT  183

seq1  GCCTGTGGCGCCTGACCCCTTGTCATCCGCTCTTCCCCTATCAGTGACCT  249
      || |||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGCGCTTGA-CCCTTGTCATCCGCTCTTCCCCTATCAGTGACCT  232

seq1  ATACTGATCACTGCAAATGAAAGAAGGTTGAATTCACTCCCAGGAAAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATCACTGCAAATGAAAGAAGGTTGAATTCACTCCCAGGAAAGTT  282

seq1  AAGGGCAATATACACAGAGCAGCGTTTGCTGTGATCTAAGAACAGCAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAATATACACAGAGCAGCGTTTGCTGTGATCTAAGAACAGCAGTG  332

seq1  GGTGGCACTTGTATTTAAAC-AAATTTTAGTAACACTCCTGGAGTGTTGA  398
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTGGCACTTGTATTTAAACAAAATTTTAGTAACACTCCTGGAGTGTTGA  382

seq1  TTCTGTCAGAAGGCCCGCACCCCTTGGTTTTTGTAACTTAAGGAGTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGAAGGCCCGCACCCCTTGGTTTTTGTAACTTAAGGAGTAAAA  432

seq1  TGTTTATTGAGCTTACATGTCCCAATTACAGTCCATCAAGAGGGAGGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGAGCTTACATGTCCCAATTACAGTCCATCAAGAGGGAGGTCA  482

seq1  TGTTGGAATTCAAGAAAGGCAGGAACATAGAGGCAGAAATTGAAGCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAATTCAAGAAAGGCAGGAACATAGAGGCAGAAATTGAAGCAGAG  532

seq1  GTCATGTGGGGACCCAGCTTACTGACTTACTCCCCATGGATTGCTGAGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGGGGACCCAGCTTACTGACTTACTCCCCATGGATTGCTGAGTC  582

seq1  TGCTCACCCAGGACCAACTGTTCAAAGGTGACACTGACCACAGTAGGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCCAGGACCAACTGTTCAAAGGTGACACTGACCACAGTAGGCCA  632

seq1  GGCCTTCCCACACTAATGGATAATCAAGAAAATACCCTTCAGTCTTGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCCACACTAATGGATAATCAAGAAAATACCCTTCAGTCTTGTTG  682

seq1  ACAGACCAACCTGATATAGGCATTTTCTCAGGTGAGATTCTCTCTTCCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAACCTGATATAGGCATTTTCTCAGGTGAGATTCTCTCTTCCCA  732

seq1  GGTGACCTTAGCTAGTATTAACTTCACAGCAGTAACTCCACCACCTAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTTAGCTAGTATTAACTTCACAGCAGTAACTCCACCACCTAAGC  782

seq1  AGCACCTATCAGTAGAAACAAAGTGCCCTACTTAACCTTGTCAATCTCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTATCAGTAGAAACAAAGTGCCCTACTTAACCTTGTCAATCTCAC  832

seq1  ACAGTGTAGAGTCACCTGAAAAGGGAGTCTCAACTGAAGGCTGGCCTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAGAGTCACCTGAAAAGGGAGTCTCAACTGAAGGCTGGCCTGAC  882

seq1  TTGACTCCTGATTGATGTGAGCCCACTGTGGATAGCATTGTTTCTTGGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTGATTGATGTGAGCCCACTGTGGATAGCATTGTTTCTTGGGC  932

seq1  AGGTGGTCTGCATAAGAAAGATAACTGAACACAAGCCTGGGAATGAACCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTCTGCATAAGAAAGATAACTGAACACAAGCCTGGGAATGAACCA  982

seq1  GCAAGAGTCCCCTCACGCTCACTGCTTCAGTTCCTGCTTGAATTCCTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTCCCCTCACGCTCACTGCTTCAGTTCCTGCTTGAATTCCTGTT  1032

seq1  CTGATTTCCCTCAGTCATGAACTGTGATCTGGAAGCATAAGGCAAATGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCCCTCAGTCATGAACTGTGATCTGGAAGCATAAGGCAAATGAA  1082

seq1  TTC  1101
      |||
seq2  TTC  1085