BAC Information

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BAC

Clone NameB6Ng01-038J22
Chromosome12 (Build37)2 (Build37)
Map Location 79,720,534 - 79,721,07254,606,471 - 54,607,542
singlet/doubletsingletsinglet
Overlap geneGphn
Upstream geneLOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038J22.bB6Ng01-038J22.g
ACCDH866130DH866131
length1,0471,063
definitionDH866130|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J22, 5' end.DH866131|Mus musculus domesticus DNA, BAC clone: B6Ng01-038J22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,720,534 - 79,721,072)(54,606,471 - 54,607,542)
sequence
gaattctttgtttagctctgcaccccattttttaatggggttatttgatt
tttttgagtccatcctcttgacttctttatatatattggatattcgtccc
ctatctgatttaggataggtaaagatcctttctcaatgtgttggtggcct
ttgtggattattgacggtgtcttgccttgcagaagctttgcaactttatg
aggtcccatttatcgattctcgatcttacaacacaagccattgctgtttt
attcaggaatttttcctttgttggatcttttcatggtttaggtatcagag
taattgtggcttcatagaatgatttgggtagagtaccttctgcttctatt
ttgtggattagtttgtgaagaactgggattagatcttctttgaagttctg
atagaactctgtactaaaagccacctggtcctgggctttttttggttggc
agactattaatgactgcttctatttctttaggggatataggactgtttag
atcattaatctgatcttgatttaactttggtacctggtatctgtctagaa
acttgtccatttcatccaggttctccagttttgttgagtatagcctttag
tagaaggatctgatggtgtttttgatttcttcaggatctgttgttatgtc
tcccttttcatttcagattttgttaattacgatgctttccctgtgccctc
tagtgagtctggctaagggtttatttatcttgtttgattttctcaaagaa
ccagctcctctttggttgattctttgaatagttcgtcttgtttccacttg
gttgatttcacccctgagtttgattttcctgccatctactcttcttgggt
gaatttgcttccttttgttctagagcttttaaggtgtgttgtcaaactgc
taatgtgtgctctctctagtttctttttggaggcactcagagctatgagt
tttcctcttagaattgctttcatgtgtcccataagtttaggaatgtgagc
ttcattcattaaactctaaaaagtcatgattctttctttatccttct
gaattcaagggatgggtagatgctgtggtgaaatcactaagaggttttgt
tgttttctagttttattctaattgtttacatttttgtcattgaaaactgg
gagtgggaattgataatatatgttgaggcaacatgaaattatgaacttgt
aatatacatagtggagagaagtatagaaaataaaatataagttgatggtg
atggaattaaggactagctagacctgtgatgacgaatttaaagtcagtaa
ctgcagcagcgttattgttaatagataccaggtaaacatcttttactgtt
ttagtgccatccctggaatacaaactcattctattttgttcatctcattt
ctccctccaaggaaggaaagcgatgggaatgtgagtaatgtgctacagat
gtccaatattgttcaagagaaaatccataattgattttttaaaagaaacc
tttagtaatataaatctcagctttgacttttacttgtttgtattacttgg
tgttctatggtggatgaaggttcatactcgaaactgaccttggggcagtc
ttttgtcctcacagagtgtattttctaatttataaacgaaccacaaagaa
cataagatatacttcatgaggttcatattgaaaattacatgagactatgt
ggttgagctgtataatgaacacattcattttaagtatattcatgcatgca
aaataaaattcaataaatattgactgctaactacttttggcatgatcata
taagttaattcatgtgtatttcttttgtgtacattttgtcttggagcttg
gctattgctatttgaaggtagaatactcatataatactgggaggatattc
tcaacagataatagtcaagttgtctccacatatatccacatgaatcatcc
caagcaaagcacaaacagaccaaggtatagaaagaatgatcttctttcag
ggaaaaagaaacagacactatcaatgtactgcatagcatatgatagaaaa
aatttattactatttttttcctaaattatgaccactttgttgttttctgc
tgtaaattgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79720534_79721072
seq2: B6Ng01-038J22.b_564_1093 (reverse)

seq1  GAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGA  50
      ||||| ||||||||||||  | | |||||||||||||||||||  |||||
seq2  GAAGG-ATAAAGAAAGAA--TCATGACTTTTTAGAGTTTAATG--AATGA  45

seq1  AGCCACAACATACCCAAACTTATGGGACACAATGAAAGCATTTCTAAGAG  100
      |||    |||| || ||||||||||||||| ||||||||| |||||||||
seq2  AGC--TCACATTCCTAAACTTATGGGACAC-ATGAAAGCAATTCTAAGAG  92

seq1  GAAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACAC  142

seq1  ATTAGCAGCCTGACAACACACC-TAAAAGCTCTAGAACAAAAGGAAGCAA  199
      ||||||||  |||||||||||| |||||||||||||||||||||||||||
seq2  ATTAGCAGTTTGACAACACACCTTAAAAGCTCTAGAACAAAAGGAAGCAA  192

seq1  ATTCACCCAAGAGGAGTAGACGGCAAGAAATAATCAAACTCAGGGGCGAA  249
      |||||||||||| ||||||| |||| |||  ||||||||||||||| |||
seq2  ATTCACCCAAGAAGAGTAGATGGCAGGAA--AATCAAACTCAGGGGTGAA  240

seq1  ATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAATCCAG  299
      ||||||||||||||||||||| |||||||||||||||||||||||   ||
seq2  ATCAACCAAGTGGAAACAAGACGAACTATTCAAAGAATCAACCAA-AGAG  289

seq1  GAGCTGGTTCTTTGAGAAAATC-AACAAGATAGATAAACCCTTAGCCAGA  348
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  GAGCTGGTTCTTTGAGAAAATCAAACAAGATAAATAAACCCTTAGCCAGA  339

seq1  CTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGA  398
      |||||||||||||||||||| | |||| |||||||||||||| |||||||
seq2  CTCACTAGAGGGCACAGGGAAAGCATCGTAATTAACAAAATCTGAAATGA  389

seq1  AAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGAT  448
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGGGAGACATAACAACAGATCCTGAAGAAATCAAAAACACCATCAGAT  439

seq1  CCTTCTACAAAAAGCTATACTCAACAAAACTGGAAAACCTGGATAAAATG  498
      |||||||| ||| ||||||||||||||||||||| ||||||||| |||||
seq2  CCTTCTACTAAAGGCTATACTCAACAAAACTGGAGAACCTGGATGAAATG  489

seq1  GACAAATTTCTAGACAGATACTAGGTACCAAAGTTAAATCA  539
      ||||| ||||||||||||||| |||||||||||||||||||
seq2  GACAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCA  530

seq1: chr2_54606471_54607542
seq2: B6Ng01-038J22.g_68_1130 (reverse)

seq1  TCTACAATTTTACAGCAAGAAAACATACATAGTGGTCATAATTTTAGGAT  50
      ||||||| |||||||| |||||||| ||| ||||||||||| ||||||| 
seq2  TCTACAA-TTTACAGC-AGAAAACA-ACAAAGTGGTCATAA-TTTAGGA-  45

seq1  AAAATATAGTAATAAAATATATCTATCATATGCTAATGCAGTACATTGAT  100
      |||| ||||||||||| | | ||||||||||||| |||||||||||||||
seq2  AAAAAATAGTAATAAATTTTTTCTATCATATGCT-ATGCAGTACATTGAT  94

seq1  AGTGTCTGTTTCTTTTTTCCCTTGAAAGAAGATCATTCTTTCTATTACCT  150
      |||||||||||||||||  || |||||||||||||||||||||| |||||
seq2  AGTGTCTGTTTCTTTTT--CCCTGAAAGAAGATCATTCTTTCTA-TACCT  141

seq1  TGGTCTGTTTGTGCTTTGCTTGGGATGATTCATGTGGATATATGTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTTTGTGCTTTGCTTGGGATGATTCATGTGGATATATGTGGAGA  191

seq1  CAACTTGACTATTATCTGTTGAGAATATCCTCCCAGTATTATATGAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACTATTATCTGTTGAGAATATCCTCCCAGTATTATATGAGTAT  241

seq1  TCTACCTTCAAATAGCAATAGCCAAGCTCCAAGACAAAATGTACACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTCAAATAGCAATAGCCAAGCTCCAAGACAAAATGTACACAAAA  291

seq1  GAAATACACATGAATTAACTTATATGATCATGCCAAAAGTAGTTAGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACACATGAATTAACTTATATGATCATGCCAAAAGTAGTTAGCAGT  341

seq1  CAATATTTATTGAATTTTATTTTGCATGCATGAATATACTTAAAATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTATTGAATTTTATTTTGCATGCATGAATATACTTAAAATGAAT  391

seq1  GTGTTCATTATACAGCTCAACCACATAGTCTCATGTAATTTTCAATATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATTATACAGCTCAACCACATAGTCTCATGTAATTTTCAATATGA  441

seq1  ACCTCATGAAGTATATCTTATGTTCTTTGTGGTTCGTTTATAAATTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGAAGTATATCTTATGTTCTTTGTGGTTCGTTTATAAATTAGAA  491

seq1  AATACACTCTGTGAGGACAAAAGACTGCCCCAAGGTCAGTTTCGAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTCTGTGAGGACAAAAGACTGCCCCAAGGTCAGTTTCGAGTATG  541

seq1  AACCTTCATCCACCATAGAACACCAAGTAATACAAACAAGTAAAAGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCATCCACCATAGAACACCAAGTAATACAAACAAGTAAAAGTCAA  591

seq1  AGCTGAGATTTATATTACTAAAGGTTTCTTTTAAAAAATCAATTATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATTTATATTACTAAAGGTTTCTTTTAAAAAATCAATTATGGAT  641

seq1  TTTCTCTTGAACAATATTGGACATCTGTAGCACATTACTCACATTCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGAACAATATTGGACATCTGTAGCACATTACTCACATTCCCAT  691

seq1  CGCTTTCCTTCCTTGGAGGGAGAAATGAGATGAACAAAATAGAATGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCCTTCCTTGGAGGGAGAAATGAGATGAACAAAATAGAATGAGTT  741

seq1  TGTATTCCAGGGATGGCACTAAAACAGTAAAAGATGTTTACCTGGTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCAGGGATGGCACTAAAACAGTAAAAGATGTTTACCTGGTATCT  791

seq1  ATTAACAATAACGCTGCTGCAGTTACTGACTTTAAATTCGTCATCACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATAACGCTGCTGCAGTTACTGACTTTAAATTCGTCATCACAGG  841

seq1  TCTAGCTAGTCCTTAATTCCATCACCATCAACTTATATTTTATTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAGTCCTTAATTCCATCACCATCAACTTATATTTTATTTTCTAT  891

seq1  ACTTCTCTCCACTATGTATATTACAAGTTCATAATTTCATGTTGCCTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTCCACTATGTATATTACAAGTTCATAATTTCATGTTGCCTCAA  941

seq1  CATATATTATCAATTCCCACTCCCAGTTTTCAATGACAAAAATGTAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTATCAATTCCCACTCCCAGTTTTCAATGACAAAAATGTAAACA  991

seq1  ATTAGAATAAAACTAGAAAACAACAAAACCTCTTAGTGATTTCACCACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAAAACTAGAAAACAACAAAACCTCTTAGTGATTTCACCACAG  1041

seq1  CATCTACCCATCCCTTGAATTC  1072
      ||||||||||||||||||||||
seq2  CATCTACCCATCCCTTGAATTC  1063