BAC Information

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BAC

Clone NameB6Ng01-038N15
Chromosome12 (Build37)
Map Location 34,477,822 - 34,626,857
singlet/doubletdoublet
Overlap geneLOC668806, Ferd3l
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneTwist1, Hdac9, 4921508M14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038N15.bB6Ng01-038N15.g
ACCDH866293DH866294
length6811,066
definitionDH866293|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N15, 5' end.DH866294|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,477,822 - 34,478,501)(34,625,785 - 34,626,857)
sequence
gaattcatcttttcatcacacatctccctttttaatacttgtgtgtttag
gtttgggccaatctggatgacttaagaacatatcaaaatagagataccgt
tccttgatcttttactgcccaaaggctccttttatttacttactttaagt
aaggggcttggagaaaggggataatcattactaatgaatttggtgctggt
gaaaaataccagatgggccgtcacagggtctggagtccttttacccacag
gctaaggcaaaatacttctctgtgtggtttgattccagatgtaacctgga
gtctagattatcttccacgtccagacctgcacagtctcaccttcctgaat
cagtatcttcatatttcagcacccactgcttcctgtatatctcagctgca
cagaattccctttcttgggttactttttaaaaaaagaaaagtgaaggcat
gaagttgggaggtagacttgttcaagggcatctgtgtgtgtgtgtgtggg
aggggggatgctcggtatggatataatcaaaatacactgtatacatgtgt
gaagtttccagaaagaaaatattattattttttaaaagagagataactac
tcctcgttttctcagactcttttccaagaatagaggtttcactctcaacc
atgtcttctggtaaacagttcatgttaagtt
gaattcatctcaacccaatcttagttttgttcaagaacaggataataaca
tggaggggaaaggcaaaacgtcctccgagtaactgtgactagcaggacag
agggtttgagatccagtgtacaggaagtggggtaagcatgtgtggatgcc
aaggatgagaactgaagagagggcaatgtatccttctctcccttacagtc
ttcaaacatcatggatataataaatatctgaagtaggagtctttaaagca
caggatatattacgtgtcattatgaagatgcattccctgaaagaaagccc
aaggcctgaacatctcattataacaccaggtagtacacacatggacacat
gttcgcgtgcgtgcgcgcgcgcacacacacacacacacacacacacaagc
gtgcaaatgcccatgtgcttttggaacttaagacaatagcccagttcaca
ttcaagagggttttttgtttgttcgtttgttttctctcactgtctaaaca
tgaagcaacactagtgtatctgaatgagactggggaaaacatcatattca
ttacataagacaaaaaaataaatgttctctttgaaagatgagacagggag
actggcagaagttttatataggagcctttgctttgggcttgtgaatgcac
ttcagctaggtgttccaaacaatagccctaccaccatcttgtaaggatta
gcttctgtgtccatggcatgaccatggagctacattaaggcatttgtcaa
ggctgcctctagagaaagaaacagccttgaaagagtctggctttaagaat
ccgtaagctctttttaactaattggaactatttgctcctctgtaacataa
gtgtgttaatatctgtctcagtacatcttctgggagattgaatgaagtaa
tccaaactttagtacctagagttgttcagtgacataattgctacccaagt
gcttggggaatctatctctgcactgtgtgtagggaaagtggcagtagcgc
agagcactgctctggggtctgtagaagagtgagagtagaagtggcgacga
aaccaccctaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34477822_34478501
seq2: B6Ng01-038N15.b_43_723

seq1  GAATTCATCTTTTCATCACACATCTCCCTTTTTAATACTTGTGTGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTCATCACACATCTCCCTTTTTAATACTTGTGTGTTTAG  50

seq1  GTTTGGGCCAATCTGGATGACTTAAGAACATATCAAAATAGAGATACCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCCAATCTGGATGACTTAAGAACATATCAAAATAGAGATACCGT  100

seq1  TCCTTGATCTTTTACTGCCCAAAGGCTCCTTTTATTTACTTACTTTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATCTTTTACTGCCCAAAGGCTCCTTTTATTTACTTACTTTAAGT  150

seq1  AAGGGGCTTGGAGAAAGGGGATAATCATTACTAATGAATTTGGTGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTTGGAGAAAGGGGATAATCATTACTAATGAATTTGGTGCTGGT  200

seq1  GAAAAATACCAGATGGGCCGTCACAGGGTCTGGAGTCCTTTTACCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACCAGATGGGCCGTCACAGGGTCTGGAGTCCTTTTACCCACAG  250

seq1  GCTAAGGCAAAATACTTCTCTGTGTGGTTTGATTCCAGATGTAACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCAAAATACTTCTCTGTGTGGTTTGATTCCAGATGTAACCTGGA  300

seq1  GTCTAGATTATCTTCCACGTCCAGACCTGCACAGTCTCACCTTCCTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGATTATCTTCCACGTCCAGACCTGCACAGTCTCACCTTCCTGAAT  350

seq1  CAGTATCTTCATATTTCAGCACCCACTGCTTCCTGTATATCTCAGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTCATATTTCAGCACCCACTGCTTCCTGTATATCTCAGCTGCA  400

seq1  CAGAATTCCCTTTCTTGGGTTACTTTTTAAAAAAAGAAAAGTGAAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCCCTTTCTTGGGTTACTTTTTAAAAAAAGAAAAGTGAAGGCAT  450

seq1  GAAGTTGGGAGGTAGACTTGTTCAAGGGCATCTGTGTGTGTGTGTGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGGAGGTAGACTTGTTCAAGGGCATCTGTGTGTGTGTGTGTGGG  500

seq1  AGGGGGGATGCTCGGTATGGATATAATCAAAATACACTGTATACATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGATGCTCGGTATGGATATAATCAAAATACACTGTATACATGTGT  550

seq1  GAAGTTTCCAGAAAGAAAATATTATTA-TTTTTAAAAGAGAGATAACTAC  599
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAGTTTCCAGAAAGAAAATATTATTATTTTTTAAAAGAGAGATAACTAC  600

seq1  TCCTCGTTATTCTCAGACTCTTTTCCAAGAATAGAGGTTTCACAC-CAGC  648
      |||||||| |||||||||||||||||||||||||||||||||| | || |
seq2  TCCTCGTT-TTCTCAGACTCTTTTCCAAGAATAGAGGTTTCACTCTCAAC  649

seq1  CATGTCTTCTGGTAGACAGTTCATGTAAAGTT  680
      |||||||||||||| ||||||||||| |||||
seq2  CATGTCTTCTGGTAAACAGTTCATGTTAAGTT  681

seq1: chr12_34625785_34626857
seq2: B6Ng01-038N15.g_66_1131 (reverse)

seq1  TCTTCCTAGGGTGGTTTTCTGTCGCCACTTCTACTCTCACCTCTCCTACA  50
      |||||||||||||||||   ||||||||||||||||||| |||| |||||
seq2  TCTTCCTAGGGTGGTTT--CGTCGCCACTTCTACTCTCA-CTCTTCTACA  47

seq1  GACCCCAGAGGCAGTGCTCTGCGCTTACTGCCACTTTCCCTTACACACAG  100
      ||||||||| |||||||||||||| ||||||||||||||| |||||||||
seq2  GACCCCAGA-GCAGTGCTCTGCGC-TACTGCCACTTTCCC-TACACACAG  94

seq1  TGCAGAGATAGATTCCCCAAGCACTTGGGTAGCAATTATGTCACTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGATAGATTCCCCAAGCACTTGGGTAGCAATTATGTCACTGAACA  144

seq1  ACTCTAGGTACTAAAGTTTGGATTACTTCATTCAAATCTCCCAGAAGATG  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTCTAGGTACTAAAGTTTGGATTACTTCATTC-AATCTCCCAGAAGATG  193

seq1  TACTGAGACAGATATTAACACACTTATGTTACAGAGGAGCAAATAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGACAGATATTAACACACTTATGTTACAGAGGAGCAAATAGTTCC  243

seq1  AATTAGTTAAAAAGAGCTTACGGATTCTTAAAGCCAGACTCTTTCAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTAAAAAGAGCTTACGGATTCTTAAAGCCAGACTCTTTCAAGGC  293

seq1  TGTTTCTTTCTCTAGAGGCAGCCTTGACAAATGCCTTAATGTAGCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCTCTAGAGGCAGCCTTGACAAATGCCTTAATGTAGCTCCAT  343

seq1  GGTCATGCCATGGACACAGAAGCTAATCCTTACAAGATGGTGGTAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCCATGGACACAGAAGCTAATCCTTACAAGATGGTGGTAGGGCT  393

seq1  ATTGTTTGGAACACCTAGCTGAAGTGCATTCACAAGCCCAAAGCAAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGGAACACCTAGCTGAAGTGCATTCACAAGCCCAAAGCAAAGGC  443

seq1  TCCTATATAAAACTTCTGCCAGTCTCCCTGTCTCATCTTTCAAAGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATAAAACTTCTGCCAGTCTCCCTGTCTCATCTTTCAAAGAGAAC  493

seq1  ATTTATTTTTTTGTCTTATGTAATGAATATGATGTTTTCCCCAGTCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTTGTCTTATGTAATGAATATGATGTTTTCCCCAGTCTCAT  543

seq1  TCAGATACACTAGTGTTGCTTCATGTTTAGACAGTGAGAGAAAACAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACACTAGTGTTGCTTCATGTTTAGACAGTGAGAGAAAACAAACG  593

seq1  AACAAACAAAAAACCCTCTTGAATGTGAACTGGGCTATTGTCTTAAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAACCCTCTTGAATGTGAACTGGGCTATTGTCTTAAGTTC  643

seq1  CAAAAGCACATGGGCATTTGCACGCTTGTGTGTGTGTGTGTGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCACATGGGCATTTGCACGCTTGTGTGTGTGTGTGTGTGTGTGTG  693

seq1  TGCGCGCGCGCACGCACGCGAACATGTGTCCATGTGTGTACTACCTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGCGCGCACGCACGCGAACATGTGTCCATGTGTGTACTACCTGGTG  743

seq1  TTATAATGAGATGTTCAGGCCTTGGGCTTTCTTTCAGGGAATGCATCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGAGATGTTCAGGCCTTGGGCTTTCTTTCAGGGAATGCATCTTC  793

seq1  ATAATGACACGTAATATATCCTGTGCTTTAAAGACTCCTACTTCAGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACACGTAATATATCCTGTGCTTTAAAGACTCCTACTTCAGATAT  843

seq1  TTATTATATCCATGATGTTTGAAGACTGTAAGGGAGAGAAGGATACATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATCCATGATGTTTGAAGACTGTAAGGGAGAGAAGGATACATTG  893

seq1  CCCTCTCTTCAGTTCTCATCCTTGGCATCCACACATGCTTACCCCACTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTTCAGTTCTCATCCTTGGCATCCACACATGCTTACCCCACTTC  943

seq1  CTGTACACTGGATCTCAAACCCTCTGTCCTGCTAGTCACAGTTACTCGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACTGGATCTCAAACCCTCTGTCCTGCTAGTCACAGTTACTCGGA  993

seq1  GGACGTTTTGCCTTTCCCCTCCATGTTATTATCCTGTTCTTGAACAAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTTTGCCTTTCCCCTCCATGTTATTATCCTGTTCTTGAACAAAAC  1043

seq1  TAAGATTGGGTTGAGATGAATTC  1073
      |||||||||||||||||||||||
seq2  TAAGATTGGGTTGAGATGAATTC  1066