BAC Information

Click to search

BAC

Clone NameB6Ng01-039B21
Chromosome12 (Build37)
Map Location 62,986,045 - 62,987,198
singlet/doubletsinglet
Overlap geneLOC665707
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
Downstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039B21.bB6Ng01-039B21.g
ACCDH866475DH866476
length1,2321,147
definitionDH866475|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B21, 5' end.DH866476|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaggcttcttatatgttcatgggcatctctttttttaggtta
gggaagttttcttctataattttgttgaagatatttattagccttttaag
ttgaaaatcttcattctcatctatacctattatctttaggtttggtcttc
tcattgtgtcctgtagttcctggatattttgagataggattttttttttt
tttttttttgcattttgcattttgcactttctttgcttgttgtgtccatg
ttttctatggaatcttctgcatttgagatctcttgtatattttgtaatct
gcttgtgatacttgcatctatggctcctgatatttttcctagaatttcta
catccagagttgtctccctttttgatttctttattgtttctacttccatt
tttggatcatgaatgttttttattttttttactttttttttaaatttatt
caccttttttattgtgttctcctgtaattctttaagggatttttgtgttt
catctttaaggacttctgtttatctgtgttctcctgtatttctttatggg
agttattaatgtccttcttaaaatcctctaccaacatcatgagatatgat
tctaaatctgaatcttgctttatccggtgtgttggggcatccatgactaa
ctgtgatgggagtactgggttgtgatgatgccaagtagtcttattttctg
ttggtaaattattaaacttgcctttcttcatctggtaatctctggtgtta
gatgttctagctgtctgtggctggagcttgttcctctgtgagtctgtaag
cctgtgtcaacactcctgggagaccagctctctcctggcaagaacactgc
acagaggtctgtggaacagctccacctcctggctgcagatgtaggcctat
aggaccctgtttcagaagctctcttgcttctgtgtcctgctctcctgatg
gctttagagagatgcacgaggaaatggtgatctctcctaatcctgggggt
cgagaaattcctcggaggcaagtctctcctgtcaggctatccactgagga
ctggggagtccactctttatgcggaagtgagtctagactggtttgaggcc
tgtgctcgaggcgtgtctctggagacacttaaaaaacctgatggtcctta
tgcttaacatatcctaatatggtctggacctggaccaagccaccagtagg
cctgatacgatgcggaacctggtcaggagacg
gaattctcaaatttaacttcataagcattatcactttctgtttttataaa
gaaaaaaaagaaaaagaattgtttttatgggaaaatttcaagccatcaaa
taaatgcaaaaatatatatacagctgtttctcagaaacacttcagagatt
tctatttatctctttatagttatcaagtcttagaaataaatactgtcagt
ggctgaatggtatgaatagtcaccctgacaagaaaagtattccattaagt
gaaataagataaattctggagtaaacttgttttcatgatctcacatcatt
gtggaatagaacaaaagacttcaaacatgaagacaagttaaggattggtt
actatgggcagaaggaggagcaacagagaataaaaaagactgcaaaacag
taaacacaaagaggatctaagccttgaaggaaatatgaagatattgtata
tttcgtaattgtcaatgaagatacattttaaattttaggtacctttgatt
cttgtgtttcagtcgataaaattgctcgcatgattgaaatgacaatatga
aactatagatgctttgatctatatttcaattgttttattccttttatttc
taaattatgtgtatgccagtttatatgtgagtttatgcatgtgagttcag
gtaagttgagttggagttctaggcagttatgagctgcctcttttgggtgg
tgggcagactcaggtcctatttcaataccatatacagccctgatcatatt
ataaggatctaatacacattgtaaaatttatttttaaatgtaaaatagta
gatactgatcatcagtcttctaacaacatatacaaaccaaaatatttaag
aaactttagaaattgattattgaaggcagtgtgattatctctcaagttta
ctttgctttatgtgaaatctcaaggtgaaaaagcataaagcagtgaaaaa
atcaaagtaaaaatatgttcaaatgtctactgaaaatgtcaaaaatttct
aatcatcataatttatccttaaatgtaaaatgtataatttattaatacca
ttatgttagcatattattctatgtcatcctttttattatatctagtctgc
atagttatcaaccagttggtcctaccatattatcattatccacccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62986045_62987198
seq2: B6Ng01-039B21.g_67_1213 (reverse)

seq1  GTGGTTGGATAATGGGATAATATGGTA-GACCAACTGGTTGATAAACTAT  49
      |||| ||||||||  |||||||||||| ||||||||||||||| ||||||
seq2  GTGGGTGGATAAT--GATAATATGGTAGGACCAACTGGTTGAT-AACTAT  47

seq1  GCAAGAC-ATAGATAATAAAAAGGATGACATAGAATAATATTGCTTAACA  98
      || |||| | | |||||||||||||||||||||||||||| ||| |||||
seq2  GC-AGACTAGATATAATAAAAAGGATGACATAGAATAATA-TGC-TAACA  94

seq1  TAATGGTATTAATAAATTATACATTTTTACATTTAAGGATTAAATTATGA  148
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TAATGGTATTAATAAATTATACA-TTTTACATTTAAGGA-TAAATTATGA  142

seq1  TGATTAGAAATTTTTGACATTTTCAGTAGACATTTGAACATATTTTTACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGAAATTTTTGACATTTTCAGTAGACATTTGAACATATTTTTACT  192

seq1  TTGATTTTTTTCACTGCTTTATGCTTTTTCACCTTGAGATTTCACATAAA  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGA-TTTTTTCACTGCTTTATGCTTTTTCACCTTGAGATTTCACATAAA  241

seq1  GCAAAGTAAACTTGAGAGATAATCACACTGCCTTCAATAATCAATTTCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAAACTTGAGAGATAATCACACTGCCTTCAATAATCAATTTCTA  291

seq1  AAGTTTCTTAAATATTTTGGTTTGTATATGTTGTTAGAAGACTGATGATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTAAATATTTTGGTTTGTATATGTTGTTAGAAGACTGATGATC  341

seq1  AGTATCTACTATTTTACATTTAAAAATAAATTTTACAATGTGTATTAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTACTATTTTACATTTAAAAATAAATTTTACAATGTGTATTAGAT  391

seq1  CCTTATAATATGATCAGGGCTGTATATGGTATTGAAATAGGACCTGAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAATATGATCAGGGCTGTATATGGTATTGAAATAGGACCTGAGTC  441

seq1  TGCCCACCACCCAAAAGAGGCAGCTCATAACTGCCTAGAACTCCAACTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCACCCAAAAGAGGCAGCTCATAACTGCCTAGAACTCCAACTCA  491

seq1  ACTTACCTGAACTCACATGCATAAACTCACATATAAACTGGCATACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTGAACTCACATGCATAAACTCACATATAAACTGGCATACACAT  541

seq1  AATTTAGAAATAAAAGGAATAAAACAATTGAAATATAGATCAAAGCATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAAATAAAAGGAATAAAACAATTGAAATATAGATCAAAGCATCT  591

seq1  ATAGTTTCATATTGTCATTTCAATCATGCGAGCAATTTTATCGACTGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCATATTGTCATTTCAATCATGCGAGCAATTTTATCGACTGAAA  641

seq1  CACAAGAATCAAAGGTACCTAAAATTTAAAATGTATCTTCATTGACAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAATCAAAGGTACCTAAAATTTAAAATGTATCTTCATTGACAATT  691

seq1  ACGAAATATACAATATCTTCATATTTCCTTCAAGGCTTAGATCCTCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATATACAATATCTTCATATTTCCTTCAAGGCTTAGATCCTCTTTG  741

seq1  TGTTTACTGTTTTGCAGTCTTTTTTATTCTCTGTTGCTCCTCCTTCTGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGTTTTGCAGTCTTTTTTATTCTCTGTTGCTCCTCCTTCTGCC  791

seq1  CATAGTAACCAATCCTTAACTTGTCTTCATGTTTGAAGTCTTTTGTTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAACCAATCCTTAACTTGTCTTCATGTTTGAAGTCTTTTGTTCTA  841

seq1  TTCCACAATGATGTGAGATCATGAAAACAAGTTTACTCCAGAATTTATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAATGATGTGAGATCATGAAAACAAGTTTACTCCAGAATTTATCT  891

seq1  TATTTCACTTAATGGAATACTTTTCTTGTCAGGGTGACTATTCATACCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACTTAATGGAATACTTTTCTTGTCAGGGTGACTATTCATACCAT  941

seq1  TCAGCCACTGACAGTATTTATTTCTAAGACTTGATAACTATAAAGAGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTGACAGTATTTATTTCTAAGACTTGATAACTATAAAGAGATA  991

seq1  AATAGAAATCTCTGAAGTGTTTCTGAGAAACAGCTGTATATATATTTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATCTCTGAAGTGTTTCTGAGAAACAGCTGTATATATATTTTTG  1041

seq1  CATTTATTTGATGGCTTGAAATTTTCCCATAAAAACAATTCTTTTTCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTGATGGCTTGAAATTTTCCCATAAAAACAATTCTTTTTCTTT  1091

seq1  TTTTTCTTTATAAAAACAGAAAGTGATAATGCTTATGAAGTTAAATTTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTATAAAAACAGAAAGTGATAATGCTTATGAAGTTAAATTTGA  1141

seq1  GAATTC  1154
      ||||||
seq2  GAATTC  1147